AT1G77350

Keratinocyte-associated protein 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014183
Physical Location & Seq
Forward (+)
29070225 .. 29071899
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77350.1

Sequence Viewer

Length: 369 bp
ATGGCAGGAGCTGTTGGAACATCAATGTTAGGGTCTCTTATTGTGTTTACAGTGATCCTCTCGCTTCAGGAAATTTACAGAGGAAAATTAGCTTCTTCAGAGCTGTTCACGATCCTTGGTGGATTCACAAGCTCTCTCCTCTTTTTGTTTTCTCTCACTTTCATTGGAAATTTTCAGGAATCTTCTGGCATCAAGAGTGGTTGGGGTGCAGTCATTCTTGCAGAAATCATAGCTCTTATCGCTGCTGGCACGGTTCATCGGGTTTGTATCACAACCTGTTTCCTGTTCTCTGCTGGGCTATTGTACGAGGTGAACAAGATCTCTGGATACATGCTATCCAAAACCGAGTCAAAGTCTAAGAGACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Keratin_assoc

Protein Analysis

122

Amino Acids

13.05

Weight (kDa)

9.06

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Keratin_assoc PF09775 5 - 118 3e-41 Keratinocyte-associated protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77350 AT1G77350
fragaria_vesca FvH4_2g27730
prunus_persica Prupe.1G490600_v2.0.a1 Prupe.1G490600_v2.0.a1
pyrus_communis pycom15g30590
rosa_chinensis RchiOBHm_Chr6g0296581
rosa_laevigata RLG00000011678
rosa_multiflora Rmu_sc0001741.1_g000021
rosa_roxburghii Rroxscaffold_7G00171350 Rroxscaffold_7G00178740
rosa_rugosa Rorug06G0263300 Rorug06G0263400.1
rosa_samantha Rh6AG375000 Rh6DG375900
rosa_wichuraiana Rw6G032700 Rw6G032800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 49, 106
AcsI RAATTY 2 cut(s) 72, 169
AcuI CTGAAG 2 cut(s) 50, 81
AfaI GTAC 1 cut(s) 305
AluBI AGCT 5 cut(s) 11, 92, 103, 132, 233
AluI AGCT 5 cut(s) 11, 92, 103, 132, 233
Alw26I GTCTC 2 cut(s) 39, 355
AlwI GGATC 2 cut(s) 49, 106
AlwNI CAGNNNCTG 1 cut(s) 11
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 2 cut(s) 72, 169
AsuHPI GGTGA 1 cut(s) 322
BbvI GCAGC 1 cut(s) 229
BciVI GTATCC 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 39, 355
BfuI GTATCC 1 cut(s) 320
BglII AGATCT 1 cut(s) 318
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BmsI GCATC 1 cut(s) 198
BsaI GGTCTC 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 128
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 228
BsmAI GTCTC 2 cut(s) 39, 355
Bso31I GGTCTC 1 cut(s) 39
Bsp143I GATC 3 cut(s) 54, 111, 318
BspPI GGATC 2 cut(s) 49, 106
BspTNI GGTCTC 1 cut(s) 39
BssECI CCNNGG 1 cut(s) 115
BssMI GATC 3 cut(s) 54, 111, 318
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 52, 253
BstC8I GCNNGC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 357
BstKTI GATC 3 cut(s) 57, 114, 321
BstMAI GTCTC 2 cut(s) 39, 355
BstMBI GATC 3 cut(s) 54, 111, 318
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 318
BstYI RGATCY 1 cut(s) 318
BsuI GTATCC 1 cut(s) 320
BtsIMutI CAGTG 2 cut(s) 57, 364
Cac8I GCNNGC 1 cut(s) 247
CaiI CAGNNNCTG 1 cut(s) 11
Csp6I GTAC 1 cut(s) 304
CviAII CATG 1 cut(s) 331
CviJI RGCY 6 cut(s) 11, 92, 103, 132, 233, 298
CviKI_1 RGCY 6 cut(s) 11, 92, 103, 132, 233, 298
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 1 cut(s) 357
DpnI GATC 3 cut(s) 56, 113, 320
DpnII GATC 3 cut(s) 54, 111, 318
Eco130I CCWWGG 1 cut(s) 115
Eco31I GGTCTC 1 cut(s) 39
Eco57I CTGAAG 2 cut(s) 50, 81
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 1 cut(s) 334
FaiI YATR 2 cut(s) 230, 332
FatI CATG 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 243
Fsp4HI GCNGC 1 cut(s) 243
GluI GCNGC 1 cut(s) 243
GsaI CCCAGC 1 cut(s) 297
Hin1II CATG 1 cut(s) 334
HinfI GANTC 3 cut(s) 123, 179, 347
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 3 cut(s) 48, 108, 313
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 5 cut(s) 68, 109, 176, 193, 324
Hpy8I GTNNAC 3 cut(s) 48, 108, 313
HpyCH4III ACNGT 2 cut(s) 52, 253
HpyCH4V TGCA 2 cut(s) 209, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 357
Hsp92II CATG 1 cut(s) 334
Kzo9I GATC 3 cut(s) 54, 111, 318
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 8 cut(s) 53, 161, 171, 231, 279, 289, 296, 309
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 198
MalI GATC 3 cut(s) 56, 113, 320
MboI GATC 3 cut(s) 54, 111, 318
MboII GAAGA 2 cut(s) 87, 174
MflI RGATCY 1 cut(s) 318
MluCI AATT 3 cut(s) 72, 86, 169
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 4 cut(s) 68, 74, 149, 301
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 3 cut(s) 54, 111, 318
NlaIII CATG 1 cut(s) 334
NspI RCATGY 1 cut(s) 334
PfeI GAWTC 2 cut(s) 123, 179
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
PspFI CCCAGC 1 cut(s) 293
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 1 cut(s) 318
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 3 cut(s) 54, 111, 318
SchI GAGTC 1 cut(s) 356
SetI ASST 7 cut(s) 13, 94, 105, 134, 235, 278, 312
SfaNI GCATC 1 cut(s) 198
Sse9I AATT 3 cut(s) 72, 86, 169
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 52, 253
TasI AATT 3 cut(s) 72, 86, 169
TfiI GAWTC 2 cut(s) 123, 179
TscAI CASTG 1 cut(s) 57
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 2 cut(s) 151, 245
TspRI CASTG 1 cut(s) 57
XapI RAATTY 2 cut(s) 72, 169
XceI RCATGY 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.