RLG00000011678

Protein KRTCAP2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014183
Physical Location & Seq
Forward (+)
11616869 .. 11618913
2045 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011678

Sequence Viewer

Length: 366 bp
ATGGCGGGGCCGGGGACTTCGATGTTATATTCCTTCCTTCTGTTCACTGTGATTCTGTCACTTCAAGAGATGTATAGAGGGAAGTTAGCATCAACTGAGTTGTTTACGATTCTTGGGGGATTCATCAGTTCCCTCTTGTTCATTGTGCTGCTCACTTTCATTGGCAATTATCAGGAAACATGTGGCGTAAGGACTGGCTGGGGTGCTGTTATTATAGCAGAAGCAGTTGCTCTTATTGCTGCTAGCACTGTCCACCGAGTTTGTATCACGACATGTTTCTTGTTCTCAGCTGGATTACTGTATGAGGTCAACAAGCTTTCAGGGATAATGCTTTCCAAAAGTGAATCTAAAACAAAAAGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Keratin_assoc

Protein Analysis

122

Amino Acids

13.15

Weight (kDa)

8.91

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Keratin_assoc PF09775 5 - 118 8.6e-41 Keratinocyte-associated protein 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77350 AT1G77350
fragaria_vesca FvH4_2g27730
prunus_persica Prupe.1G490600_v2.0.a1 Prupe.1G490600_v2.0.a1
pyrus_communis pycom15g30590
rosa_chinensis RchiOBHm_Chr6g0296581
rosa_laevigata RLG00000011678
rosa_multiflora Rmu_sc0001741.1_g000021
rosa_roxburghii Rroxscaffold_7G00171350 Rroxscaffold_7G00178740
rosa_rugosa Rorug06G0263300 Rorug06G0263400.1
rosa_samantha Rh6AG375000 Rh6DG375900
rosa_wichuraiana Rw6G032700 Rw6G032800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 5
AflIII ACRYGT 2 cut(s) 179, 272
AgsI TTSAA 1 cut(s) 65
AluBI AGCT 2 cut(s) 290, 316
AluI AGCT 2 cut(s) 290, 316
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 148, 239
AspS9I GGNCC 1 cut(s) 8
AsuC2I CCSGG 1 cut(s) 12
AsuNHI GCTAGC 1 cut(s) 242
BbvI GCAGC 2 cut(s) 135, 226
BcnI CCSGG 1 cut(s) 12
BfaI CTAG 1 cut(s) 243
BisI GCNGC 2 cut(s) 149, 240
BlsI GCNGC 2 cut(s) 150, 241
Bme1390I CCNGG 1 cut(s) 12
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 98
BmtI GCTAGC 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 11
BseMII CTCAG 2 cut(s) 87, 300
BseNI ACTGG 1 cut(s) 199
BseXI GCAGC 2 cut(s) 135, 226
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 11
BslFI GGGAC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 28
BsnI GGCC 1 cut(s) 10
BspACI CCGC 1 cut(s) 5
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 88, 299
BspLI GGNNCC 1 cut(s) 9
BspOI GCTAGC 1 cut(s) 246
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 11
Bst4CI ACNGT 3 cut(s) 49, 250, 300
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 96, 286
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNSI RCATGY 2 cut(s) 183, 276
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 135, 226
BsuRI GGCC 1 cut(s) 10
BtsIMutI CAGTG 3 cut(s) 45, 246, 361
Cac8I GCNNGC 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 8
CspCI CAANNNNNGTGG 2 cut(s) 242, 277
CviAII CATG 2 cut(s) 180, 273
CviJI RGCY 4 cut(s) 10, 198, 290, 316
CviKI_1 RGCY 4 cut(s) 10, 198, 290, 316
DdeI CTNAG 2 cut(s) 96, 286
FaeI CATG 2 cut(s) 183, 276
FaiI YATR 6 cut(s) 28, 75, 181, 215, 274, 303
FaqI GGGAC 1 cut(s) 28
FatI CATG 2 cut(s) 179, 272
Fnu4HI GCNGC 2 cut(s) 149, 240
Fsp4HI GCNGC 2 cut(s) 149, 240
FspBI CTAG 1 cut(s) 243
GluI GCNGC 2 cut(s) 149, 240
GsaI CCCAGC 1 cut(s) 202
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 11
Hin1II CATG 2 cut(s) 183, 276
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 4 cut(s) 52, 109, 120, 344
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 4 cut(s) 45, 105, 253, 310
Hpy188III TCNNGA 3 cut(s) 65, 173, 268
Hpy8I GTNNAC 4 cut(s) 45, 105, 253, 310
HpyAV CCTTC 2 cut(s) 43, 47
HpyCH4III ACNGT 3 cut(s) 49, 250, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 2 cut(s) 96, 286
Hsp92II CATG 2 cut(s) 183, 276
LpnPI CCDG 6 cut(s) 24, 158, 180, 184, 276, 306
Lsp1109I GCAGC 2 cut(s) 135, 226
LweI GCATC 1 cut(s) 98
MaeI CTAG 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 57
MluCI AATT 1 cut(s) 166
MnlI CCTC 3 cut(s) 71, 143, 298
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 236
NciI CCSGG 1 cut(s) 12
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 2 cut(s) 183, 276
NlaIV GGNNCC 1 cut(s) 9
NmuCI GTSAC 1 cut(s) 57
NspI RCATGY 2 cut(s) 183, 276
PciI ACATGT 2 cut(s) 179, 272
PfeI GAWTC 4 cut(s) 52, 109, 120, 344
PkrI GCNGC 2 cut(s) 150, 241
PscI ACATGT 2 cut(s) 179, 272
PspFI CCCAGC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 290
SatI GCNGC 2 cut(s) 149, 240
Sau96I GGNCC 1 cut(s) 8
ScrFI CCNGG 1 cut(s) 12
SetI ASST 3 cut(s) 292, 309, 318
SfaNI GCATC 1 cut(s) 98
Sse9I AATT 1 cut(s) 166
SsiI CCGC 1 cut(s) 5
SspMI CTAG 1 cut(s) 243
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 3 cut(s) 49, 250, 300
TaqI TCGA 1 cut(s) 20
TasI AATT 1 cut(s) 166
TfiI GAWTC 4 cut(s) 52, 109, 120, 344
TscAI CASTG 2 cut(s) 52, 253
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 2 cut(s) 148, 239
Tsp45I GTSAC 1 cut(s) 57
TspDTI ATGAA 3 cut(s) 112, 130, 148
TspRI CASTG 2 cut(s) 52, 253
XceI RCATGY 2 cut(s) 183, 276
XspI CTAG 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.