Rorug06G0263300

Protein KRTCAP2 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014183
Physical Location & Seq
Reverse (-)
40937003 .. 40943936
6934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0263300.1

Sequence Viewer

Length: 1575 bp
ATGATGCAGAGCACCACCATATTCTTCCCCACTTGTTCACCATCACAATCTCTCCGCCGAACCACTATCTCTCCCTGTCTCCTCTCTCTCCCATCATTTTCCTCTCACCACACACAATCCCAGTGGCATCCAAATCAACCAGCCCACAAGAAGAAGAGCCAATTTCAGCGACTCTGTGGCACTTATGAGGTCGGTGGAGGCTTCCCAGACGACGGATTGGGCGTCGTCCACAGAACTACCCAAGAGAAATTGGACCCGGCCCAGATTGAAGCCCTTCTCAAAGGTGGAGAACAAGTCACTTCTGTCCTCGAAGAAATGATCACCCTCTTGGAGGATATGAAGATGGATGAGGCGTCTGAAGAGGTGGCAGTGGAAATAGCTGCACAAGGGGTCCTGGGGAAGAGAGTTGATGAGATGGAGGCCGGTTTCATGATGGCGCTGGACTACATGATCCAACTTGCTGACAGTGACCAAGACGAGAAGCGCAAGTCTCTATTGGAGGTGATTAAGGACACAGTCTTATCCTACCTTACCAAAAAATGCCCCCCACATGTTCAAGTGATTGGGCTACTCTGTAGGACTCCTCTGAAAGAAAGTAGACATGAATTACTACGCAGAGTGGCTGCTGGTGGTGGTGTATTTAAAAGTAAAAATGACGTCAAAGTTCATGTTCCAGCTGCAAATCTAAATGAAATTGCTAACCAAGCTGATGATTTACTGGAGACAATGGAAACTCGGCCTATAGTTCCGGATCGAAAGCTACTTGCAAGACTTGTTTTAATCAGAGAGGAAGCTCGGAATATGATGGGAGGTGGAATACTAGATGAGAGAAATGATCGTGGGTTTAAGACTCTTCCTGAATCAGAGGTGAACTTCTTAACCAAACTGGTAGCTTTGAAACCGGGGAAGACTGTGGAGGAGATGATAAAAAGTGTAATGGAAGGAAAAGACGAAGGTGCAGAACACTCTGTCAGTGATGAGGAAGATACCACCAGTAGAAAGGGTTCGAGTGGAATTGCAGGAAGGGAAAGTGTTACAGGACGAAAAGCGCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTATCCAAGGTCTTAGGTGGTATATATGCTGGAAATGTCTCTGGCATCACAGCACAACATCTAGAGTGGGAACAATACTTTGCCATAGAAGTTGCTGGGTTGACCCTGAAGGCCAAAAGAAAAGTTCCTAATCAGAACTCATTGGCTCATGATAAATTTTGGGACCAAAGATGCTGTTCTGGACATCAATATGACGGAACTCTGAATTGTATCACTTGTCATAAATTTAAGCAAGCCGGGGAGATAGAATACTTGAACCTTGGTCGTGGTCTAATGACTTGTTCAAAATGCTGTTCTATTGCTATTAAGAATTCAGAAGAATTCAAGCCAATTATTGAAAATGTGCATAACTTTTATAAAAGTTTAAATCTGATGGTTGATCGAGACATTCCTATTTTGTTGGTCGATGGTAATGAGATGTGCAGCTCTAAACAAGGAATCTGTGTCGGTTTTACTTGCTATTGTATGGAAAGGCCATGGGAGGAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Keratin_assoc

Protein Analysis

524

Amino Acids

58.27

Weight (kDa)

5.94

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014183)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G77350 AT1G77350
fragaria_vesca FvH4_2g27730
prunus_persica Prupe.1G490600_v2.0.a1 Prupe.1G490600_v2.0.a1
pyrus_communis pycom15g30590
rosa_chinensis RchiOBHm_Chr6g0296581
rosa_laevigata RLG00000011678
rosa_multiflora Rmu_sc0001741.1_g000021
rosa_roxburghii Rroxscaffold_7G00171350 Rroxscaffold_7G00178740
rosa_rugosa Rorug06G0263300 Rorug06G0263400.1
rosa_samantha Rh6AG375000 Rh6DG375900
rosa_wichuraiana Rw6G032700 Rw6G032800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1440
AatII GACGTC 1 cut(s) 660
AccI GTMKAC 1 cut(s) 598
AccIII TCCGGA 1 cut(s) 748
AciI CCGC 1 cut(s) 55
AclWI GGATC 2 cut(s) 445, 759
AcsI RAATTY 4 cut(s) 1238, 1307, 1393, 1403
AcuI CTGAAG 2 cut(s) 378, 1211
AcyI GRCGYC 3 cut(s) 222, 353, 657
AfeI AGCGCT 1 cut(s) 1050
AfiI CCNNNNNNNGG 2 cut(s) 212, 331
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 7 cut(s) 269, 557, 898, 1339, 1368, 1408, 1421
AjnI CCWGG 2 cut(s) 393, 1063
AluBI AGCT 7 cut(s) 380, 677, 707, 760, 794, 893, 1509
AluI AGCT 7 cut(s) 380, 677, 707, 760, 794, 893, 1509
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 6 cut(s) 83, 495, 716, 1073, 1126, 1461
AlwI GGATC 2 cut(s) 445, 759
Aor13HI TCCGGA 1 cut(s) 748
Aor51HI AGCGCT 1 cut(s) 1050
AoxI GGCC 5 cut(s) 258, 420, 737, 1194, 1556
ApeKI GCWGC 4 cut(s) 380, 623, 677, 1506
ApoI RAATTY 4 cut(s) 1238, 1307, 1393, 1403
Asp700I GAANNNNTTC 2 cut(s) 273, 1003
AspLEI GCGC 4 cut(s) 439, 486, 1051, 1062
AspS9I GGNCC 4 cut(s) 253, 259, 391, 1246
AsuC2I CCSGG 3 cut(s) 257, 903, 1321
AsuHPI GGTGA 5 cut(s) 30, 98, 313, 514, 880
AvaII GGWCC 3 cut(s) 253, 391, 1246
BbsI GAAGAC 1 cut(s) 914
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 4 cut(s) 367, 610, 664, 1518
BccI CCATC 8 cut(s) 49, 100, 337, 409, 427, 799, 1450, 1484
BciT130I CCWGG 2 cut(s) 395, 1065
BciVI GTATCC 1 cut(s) 1096
BclI TGATCA 1 cut(s) 318
BcnI CCSGG 3 cut(s) 257, 903, 1321
BcoDI GTCTC 6 cut(s) 83, 495, 716, 1073, 1126, 1461
BfaI CTAG 2 cut(s) 821, 1145
BfmI CTRYAG 2 cut(s) 574, 741
BfoI RGCGCY 2 cut(s) 440, 1052
BfuI GTATCC 1 cut(s) 1096
BisI GCNGC 4 cut(s) 381, 624, 678, 1507
BlsI GCNGC 4 cut(s) 382, 625, 679, 1508
Bme1390I CCNGG 5 cut(s) 257, 395, 903, 1065, 1321
Bme18I GGWCC 3 cut(s) 253, 391, 1246
BmgT120I GGNCC 4 cut(s) 253, 259, 391, 1246
BmiI GGNNCC 3 cut(s) 255, 392, 1247
BmrFI CCNGG 5 cut(s) 257, 395, 903, 1065, 1321
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 3 cut(s) 136, 1137, 1244
BmuI ACTGGG 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 914
BpmI CTGGAG 1 cut(s) 740
BpuEI CTTGAG 1 cut(s) 1097
BpuMI CCSGG 3 cut(s) 257, 903, 1321
BsaHI GRCGYC 3 cut(s) 222, 353, 657
BsaJI CCNNGG 7 cut(s) 394, 902, 1063, 1089, 1320, 1342, 1559
BsaWI WCCGGW 1 cut(s) 748
BsaXI ACNNNNNCTCC 6 cut(s) 36, 55, 66, 85, 279, 309
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 331
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 4 cut(s) 121, 723, 891, 993
BseAI TCCGGA 1 cut(s) 748
BseBI CCWGG 2 cut(s) 395, 1065
BseDI CCNNGG 7 cut(s) 394, 902, 1063, 1089, 1320, 1342, 1559
BseGI GGATG 2 cut(s) 127, 352
BseLI CCNNNNNNNGG 2 cut(s) 212, 331
BseNI ACTGG 4 cut(s) 121, 723, 891, 993
BseRI GAGGAG 3 cut(s) 71, 573, 932
BseXI GCAGC 4 cut(s) 367, 610, 664, 1518
BseYI CCCAGC 1 cut(s) 1178
BsgI GTGCAG 3 cut(s) 366, 978, 1525
BshFI GGCC 5 cut(s) 260, 422, 739, 1196, 1558
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 5 cut(s) 257, 423, 749, 902, 1320
BslFI GGGAC 1 cut(s) 1259
BslI CCNNNNNNNGG 2 cut(s) 212, 331
BsmAI GTCTC 6 cut(s) 83, 495, 716, 1073, 1126, 1461
BsmFI GGGAC 1 cut(s) 1259
BsnI GGCC 5 cut(s) 260, 422, 739, 1196, 1558
Bsp1286I GDGCHC 1 cut(s) 14
Bsp13I TCCGGA 1 cut(s) 748
Bsp143I GATC 5 cut(s) 318, 450, 751, 835, 1462
Bsp19I CCATGG 1 cut(s) 1559
BspACI CCGC 1 cut(s) 55
BspANI GGCC 5 cut(s) 260, 422, 739, 1196, 1558
BspEI TCCGGA 1 cut(s) 748
BspHI TCATGA 2 cut(s) 429, 1231
BspLI GGNNCC 3 cut(s) 255, 392, 1247
BspPI GGATC 2 cut(s) 445, 759
BspQI GCTCTTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 4 cut(s) 121, 723, 891, 993
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 7 cut(s) 394, 902, 1063, 1089, 1320, 1342, 1559
BssMI GATC 5 cut(s) 318, 450, 751, 835, 1462
BssNI GRCGYC 3 cut(s) 222, 353, 657
BssT1I CCWWGG 3 cut(s) 1089, 1342, 1559
Bst2UI CCWGG 2 cut(s) 395, 1065
Bst4CI ACNGT 4 cut(s) 467, 517, 913, 1084
Bst6I CTCTTC 4 cut(s) 149, 354, 395, 858
BstACI GRCGYC 3 cut(s) 222, 353, 657
BstC8I GCNNGC 1 cut(s) 1317
BstDEI CTNAG 1 cut(s) 1096
BstDSI CCRYGG 1 cut(s) 1559
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 127, 352
BstH2I RGCGCY 2 cut(s) 440, 1052
BstHHI GCGC 4 cut(s) 439, 486, 1051, 1062
BstKTI GATC 5 cut(s) 321, 453, 754, 838, 1465
BstMAI GTCTC 6 cut(s) 83, 495, 716, 1073, 1126, 1461
BstMBI GATC 5 cut(s) 318, 450, 751, 835, 1462
BstMWI GCNNNNNNNGC 2 cut(s) 704, 1057
BstNI CCWGG 2 cut(s) 395, 1065
BstNSI RCATGY 2 cut(s) 554, 1072
BstSCI CCNGG 5 cut(s) 255, 393, 901, 1063, 1319
BstSFI CTRYAG 2 cut(s) 574, 741
BstV1I GCAGC 4 cut(s) 367, 610, 664, 1518
BstV2I GAAGAC 1 cut(s) 914
BsuI GTATCC 1 cut(s) 1096
BsuRI GGCC 5 cut(s) 260, 422, 739, 1196, 1558
BtgI CCRYGG 1 cut(s) 1559
BtsCI GGATG 2 cut(s) 127, 352
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 4 cut(s) 128, 375, 472, 979
Cac8I GCNNGC 1 cut(s) 1317
CciI TCATGA 2 cut(s) 429, 1231
CfoI GCGC 4 cut(s) 439, 486, 1051, 1062
Cfr10I RCCGGY 1 cut(s) 422
Cfr13I GGNCC 4 cut(s) 253, 259, 391, 1246
CseI GACGC 2 cut(s) 211, 342
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 8 cut(s) 430, 448, 551, 602, 668, 1069, 1232, 1560
DdeI CTNAG 1 cut(s) 1096
DpnI GATC 5 cut(s) 320, 452, 753, 837, 1464
DpnII GATC 5 cut(s) 318, 450, 751, 835, 1462
DraI TTTAAA 2 cut(s) 643, 1449
Eam1104I CTCTTC 4 cut(s) 149, 354, 395, 858
EarI CTCTTC 4 cut(s) 149, 354, 395, 858
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 3 cut(s) 1089, 1342, 1559
Eco47I GGWCC 3 cut(s) 253, 391, 1246
Eco47III AGCGCT 1 cut(s) 1050
Eco57I CTGAAG 2 cut(s) 378, 1211
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoO109I RGGNCCY 1 cut(s) 391
EcoRI GAATTC 2 cut(s) 1393, 1403
EcoRII CCWGG 2 cut(s) 393, 1063
EcoT14I CCWWGG 3 cut(s) 1089, 1342, 1559
ErhI CCWWGG 3 cut(s) 1089, 1342, 1559
FaeI CATG 8 cut(s) 433, 451, 554, 605, 671, 1072, 1235, 1563
FaqI GGGAC 1 cut(s) 1259
FatI CATG 8 cut(s) 429, 447, 550, 601, 667, 1068, 1231, 1559
FbaI TGATCA 1 cut(s) 318
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 4 cut(s) 381, 624, 678, 1507
FokI GGATG 2 cut(s) 114, 359
Fsp4HI GCNGC 4 cut(s) 381, 624, 678, 1507
FspBI CTAG 2 cut(s) 821, 1145
GlaI GCGC 4 cut(s) 438, 485, 1050, 1061
GluI GCNGC 4 cut(s) 381, 624, 678, 1507
GsaI CCCAGC 1 cut(s) 1182
GsuI CTGGAG 1 cut(s) 740
HaeII RGCGCY 2 cut(s) 440, 1052
HaeIII GGCC 5 cut(s) 260, 422, 739, 1196, 1558
HapII CCGG 5 cut(s) 257, 423, 749, 902, 1320
HgaI GACGC 2 cut(s) 211, 342
HhaI GCGC 4 cut(s) 439, 486, 1051, 1062
Hin1I GRCGYC 3 cut(s) 222, 353, 657
Hin1II CATG 8 cut(s) 433, 451, 554, 605, 671, 1072, 1235, 1563
Hin6I GCGC 4 cut(s) 437, 484, 1049, 1060
HinP1I GCGC 4 cut(s) 437, 484, 1049, 1060
HincII GTYRAC 1 cut(s) 1185
HindII GTYRAC 1 cut(s) 1185
HinfI GANTC 5 cut(s) 171, 580, 850, 860, 1521
HpaII CCGG 5 cut(s) 257, 423, 749, 902, 1320
HphI GGTGA 5 cut(s) 30, 98, 313, 514, 880
Hpy166II GTNNAC 5 cut(s) 38, 229, 599, 871, 1185
Hpy188I TCNGA 9 cut(s) 358, 588, 785, 798, 865, 1218, 1287, 1399, 1455
Hpy188III TCNNGA 8 cut(s) 430, 749, 857, 1076, 1145, 1232, 1263, 1466
Hpy8I GTNNAC 5 cut(s) 38, 229, 599, 871, 1185
Hpy99I CGWCG 2 cut(s) 215, 227
HpyAV CCTTC 5 cut(s) 284, 935, 947, 1017, 1186
HpyCH4III ACNGT 4 cut(s) 467, 517, 913, 1084
HpyCH4IV ACGT 1 cut(s) 657
HpyCH4V TGCA 8 cut(s) 7, 383, 680, 767, 959, 1019, 1429, 1506
HpyF10VI GCNNNNNNNGC 2 cut(s) 704, 1057
HpyF3I CTNAG 1 cut(s) 1096
HpySE526I ACGT 1 cut(s) 657
Hsp92I GRCGYC 3 cut(s) 222, 353, 657
Hsp92II CATG 8 cut(s) 433, 451, 554, 605, 671, 1072, 1235, 1563
HspAI GCGC 4 cut(s) 437, 484, 1049, 1060
Kpn2I TCCGGA 1 cut(s) 748
Ksp22I TGATCA 1 cut(s) 318
Kzo9I GATC 5 cut(s) 318, 450, 751, 835, 1462
LguI GCTCTTC 1 cut(s) 149
Lsp1109I GCAGC 4 cut(s) 367, 610, 664, 1518
LweI GCATC 3 cut(s) 136, 1137, 1244
MaeI CTAG 2 cut(s) 821, 1145
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 3 cut(s) 295, 467, 1033
MalI GATC 5 cut(s) 320, 452, 753, 837, 1464
MboI GATC 5 cut(s) 318, 450, 751, 835, 1462
MhlI GDGCHC 1 cut(s) 14
MlyI GAGTC 3 cut(s) 165, 574, 844
MmeI TCCRAC 1 cut(s) 478
MroI TCCGGA 1 cut(s) 748
MroXI GAANNNNTTC 2 cut(s) 273, 1003
MseI TTAA 8 cut(s) 507, 642, 779, 846, 878, 1311, 1389, 1448
MslI CAYNNNNRTG 1 cut(s) 1272
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 5 cut(s) 257, 423, 749, 902, 1320
MspR9I CCNGG 5 cut(s) 257, 395, 903, 1065, 1321
MvaI CCWGG 2 cut(s) 395, 1065
MwoI GCNNNNNNNGC 2 cut(s) 704, 1057
NciI CCSGG 3 cut(s) 257, 903, 1321
NcoI CCATGG 1 cut(s) 1559
NdeII GATC 5 cut(s) 318, 450, 751, 835, 1462
NlaIII CATG 8 cut(s) 433, 451, 554, 605, 671, 1072, 1235, 1563
NlaIV GGNNCC 3 cut(s) 255, 392, 1247
NmeAIII GCCGAG 1 cut(s) 715
NmuCI GTSAC 2 cut(s) 295, 467
NspI RCATGY 2 cut(s) 554, 1072
PagI TCATGA 2 cut(s) 429, 1231
PciI ACATGT 1 cut(s) 550
PciSI GCTCTTC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 219
PdmI GAANNNNTTC 2 cut(s) 273, 1003
PfeI GAWTC 2 cut(s) 860, 1521
PflFI GACNNNGTC 1 cut(s) 515
PkrI GCNGC 4 cut(s) 382, 625, 679, 1508
PleI GAGTC 3 cut(s) 165, 574, 844
PpsI GAGTC 3 cut(s) 165, 574, 844
PpuMI RGGWCCY 1 cut(s) 391
PscI ACATGT 1 cut(s) 550
PsiI TTATAA 1 cut(s) 1440
Psp5II RGGWCCY 1 cut(s) 391
Psp6I CCWGG 2 cut(s) 393, 1063
PspFI CCCAGC 1 cut(s) 1178
PspGI CCWGG 2 cut(s) 393, 1063
PspN4I GGNNCC 3 cut(s) 255, 392, 1247
PspPI GGNCC 4 cut(s) 253, 259, 391, 1246
PspPPI RGGWCCY 1 cut(s) 391
PsrI GAACNNNNNNTAC 2 cut(s) 988, 1020
PsyI GACNNNGTC 1 cut(s) 515
PvuII CAGCTG 1 cut(s) 677
RseI CAYNNNNRTG 1 cut(s) 1272
SapI GCTCTTC 1 cut(s) 149
SaqAI TTAA 8 cut(s) 507, 642, 779, 846, 878, 1311, 1389, 1448
SatI GCNGC 4 cut(s) 381, 624, 678, 1507
Sau3AI GATC 5 cut(s) 318, 450, 751, 835, 1462
Sau96I GGNCC 4 cut(s) 253, 259, 391, 1246
SchI GAGTC 3 cut(s) 165, 574, 844
ScrFI CCNGG 5 cut(s) 257, 395, 903, 1065, 1321
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 3 cut(s) 136, 1137, 1244
SfcI CTRYAG 2 cut(s) 574, 741
SinI GGWCC 3 cut(s) 253, 391, 1246
SmiMI CAYNNNNRTG 1 cut(s) 1272
SmlI CTYRAG 1 cut(s) 1076
SmoI CTYRAG 1 cut(s) 1076
SsiI CCGC 1 cut(s) 55
SspMI CTAG 2 cut(s) 821, 1145
StyD4I CCNGG 5 cut(s) 255, 393, 901, 1063, 1319
StyI CCWWGG 3 cut(s) 1089, 1342, 1559
TaaI ACNGT 4 cut(s) 467, 517, 913, 1084
TaiI ACGT 1 cut(s) 660
TaqI TCGA 5 cut(s) 309, 754, 1007, 1465, 1488
TfiI GAWTC 2 cut(s) 860, 1521
Tru1I TTAA 8 cut(s) 507, 642, 779, 846, 878, 1311, 1389, 1448
Tru9I TTAA 8 cut(s) 507, 642, 779, 846, 878, 1311, 1389, 1448
TscAI CASTG 4 cut(s) 128, 375, 472, 979
TseFI GTSAC 2 cut(s) 295, 467
TseI GCWGC 4 cut(s) 380, 623, 677, 1506
Tsp45I GTSAC 2 cut(s) 295, 467
TspDTI ATGAA 5 cut(s) 353, 418, 618, 656, 705
TspGWI ACGGA 2 cut(s) 228, 1293
TspRI CASTG 4 cut(s) 128, 375, 472, 979
Tth111I GACNNNGTC 1 cut(s) 515
VpaK11BI GGWCC 3 cut(s) 253, 391, 1246
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 4 cut(s) 1238, 1307, 1393, 1403
XbaI TCTAGA 1 cut(s) 1144
XceI RCATGY 2 cut(s) 554, 1072
XmiI GTMKAC 1 cut(s) 598
XmnI GAANNNNTTC 2 cut(s) 273, 1003
XspI CTAG 2 cut(s) 821, 1145
ZraI GACGTC 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.