Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015243

Physical Location & Seq

Genomic Coordinates Reverse (-)

29623205 .. 29625078

Gene Structure 1874 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGACGCGAACAATACCTTCGATTCTGATCTGATTCACGCCATTTTTAAGCACATTTGGGCCCGAAGATTTCGCGAAAGGGAGAGGAGCGATGCCATTGATGCTACGGAAGCTGAGGTTGCTCTGGGAACAACCAAGAAGAACAGACTTGCTTCTGCAAACGCAAATGCTTTAAAACTCAGCTGTGAACTTCTCAAGAGTTTTGTCTCAGAGGCTGTGCAGCGCGCTGCTATAATCGCTGAAGCTGAGGGAATGGAAAAGATTGAAGCTACTCATTTAGAGAGGATTCTTCCCCAGCTTCTTCTGGACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-X

Protein Analysis

104

Amino Acids

11.68

Weight (kDa)

5.59

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-X	PF09415	53 - 104	1.3e-15	CENP-S associating Centromere protein X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78790 AT1G78790 AT1G78790 AT1G78790
fragaria_vesca	FvH4_5g06690
prunus_persica	Prupe.5G161600_v2.0.a1
pyrus_communis	pycom06g14440
rosa_chinensis	RchiOBHm_Chr7g0191941
rosa_laevigata	RLG00000004416
rosa_multiflora	Rmu_ssc0000421.1_g000017
rosa_rugosa	Rorug06G0511800
rosa_samantha	Rh7AG122100 Rh7BG123700 Rh7CG126300 Rh7DG125300
rosa_wichuraiana	Rw7G010390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	8, 75, 225
AcuI	CTGAAG	1 cut(s)	261
AgsI	TTSAA	1 cut(s)	266
AluBI	AGCT	5 cut(s)	113, 183, 245, 269, 298
AluI	AGCT	5 cut(s)	113, 183, 245, 269, 298
Alw26I	GTCTC	1 cut(s)	211
AlwNI	CAGNNNCTG	1 cut(s)	215
AoxI	GGCC	1 cut(s)	60
ApaI	GGGCCC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	220, 227
AspLEI	GCGC	2 cut(s)	225, 227
AspS9I	GGNCC	2 cut(s)	60, 61
BaeGI	GKGCMC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	64
BbvCI	CCTCAGC	2 cut(s)	114, 246
BbvI	GCAGC	2 cut(s)	214, 232
BcoDI	GTCTC	1 cut(s)	211
BisI	GCNGC	2 cut(s)	221, 228
BlsI	GCNGC	2 cut(s)	222, 229
BmgT120I	GGNCC	2 cut(s)	60, 61
BmiI	GGNNCC	1 cut(s)	62
BmsI	GCATC	2 cut(s)	82, 91
Bpu10I	CCTNAGC	2 cut(s)	114, 246
BpuEI	CTTGAG	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	27
Bse8I	GATNNNNATC	1 cut(s)	27
BseJI	GATNNNNATC	1 cut(s)	27
BseMII	CTCAG	4 cut(s)	105, 193, 222, 237
BsePI	GCGCGC	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	214, 232
BseYI	CCCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	239
Bsh1236I	CGCG	3 cut(s)	8, 75, 225
BshFI	GGCC	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	62
Bsp120I	GGGCCC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	28
Bsp68I	TCGCGA	1 cut(s)	75
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	4 cut(s)	106, 192, 221, 238
BspFNI	CGCG	3 cut(s)	8, 75, 225
BspLI	GGNNCC	1 cut(s)	62
BssHII	GCGCGC	1 cut(s)	223
BssMI	GATC	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	4 cut(s)	114, 179, 208, 246
BstFNI	CGCG	3 cut(s)	8, 75, 225
BstHHI	GCGC	2 cut(s)	225, 227
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 110, 119, 236
BstSLI	GKGCMC	1 cut(s)	64
BstUI	CGCG	3 cut(s)	8, 75, 225
BstV1I	GCAGC	2 cut(s)	214, 232
BsuRI	GGCC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	105
BtuMI	TCGCGA	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	215
CfoI	GCGC	2 cut(s)	225, 227
Cfr13I	GGNCC	2 cut(s)	60, 61
CseI	GACGC	1 cut(s)	14
CviJI	RGCY	7 cut(s)	62, 113, 183, 215, 245, 269, 298
CviKI_1	RGCY	7 cut(s)	62, 113, 183, 215, 245, 269, 298
DdeI	CTNAG	4 cut(s)	114, 179, 208, 246
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
DraI	TTTAAA	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	261
EcoT38I	GRGCYC	1 cut(s)	64
FaiI	YATR	1 cut(s)	233
Fnu4HI	GCNGC	2 cut(s)	221, 228
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	2 cut(s)	221, 228
GlaI	GCGC	2 cut(s)	224, 226
GluI	GCNGC	2 cut(s)	221, 228
GsaI	CCCAGC	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	62
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	2 cut(s)	225, 227
Hin6I	GCGC	2 cut(s)	223, 225
HinP1I	GCGC	2 cut(s)	223, 225
HinfI	GANTC	3 cut(s)	23, 34, 286
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	3 cut(s)	28, 33, 211
Hpy188III	TCNNGA	3 cut(s)	74, 196, 305
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	28
HpyCH4V	TGCA	2 cut(s)	158, 220
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 110, 119, 236
HpyF3I	CTNAG	4 cut(s)	114, 179, 208, 246
HspAI	GCGC	2 cut(s)	223, 225
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	3 cut(s)	110, 290, 308
Lsp1109I	GCAGC	2 cut(s)	214, 232
LweI	GCATC	2 cut(s)	82, 91
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	4 cut(s)	78, 151, 281, 293
MhlI	GDGCHC	1 cut(s)	64
MnlI	CCTC	5 cut(s)	78, 109, 205, 241, 276
MseI	TTAA	3 cut(s)	48, 173, 313
MspA1I	CMGCKG	1 cut(s)	183
MvnI	CGCG	3 cut(s)	8, 75, 225
MwoI	GCNNNNNNNGC	4 cut(s)	101, 110, 119, 236
NdeII	GATC	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	62
NruI	TCGCGA	1 cut(s)	75
PauI	GCGCGC	1 cut(s)	223
PfeI	GAWTC	3 cut(s)	23, 34, 286
PkrI	GCNGC	2 cut(s)	222, 229
PspFI	CCCAGC	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	62
PspOMI	GGGCCC	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	60, 61
PstNI	CAGNNNCTG	1 cut(s)	215
PteI	GCGCGC	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	183
RruI	TCGCGA	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	48, 173, 313
SatI	GCNGC	2 cut(s)	221, 228
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	2 cut(s)	60, 61
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	7 cut(s)	20, 115, 120, 185, 247, 271, 300
SfaNI	GCATC	2 cut(s)	82, 91
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
TaqI	TCGA	1 cut(s)	21
TfiI	GAWTC	3 cut(s)	23, 34, 286
Tru1I	TTAA	3 cut(s)	48, 173, 313
Tru9I	TTAA	3 cut(s)	48, 173, 313
TseI	GCWGC	2 cut(s)	220, 227
TspGWI	ACGGA	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.