Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015243

Physical Location & Seq

Genomic Coordinates Reverse (-)

3949323 .. 3953615

Gene Structure 4293 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g06690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGGAGAACCAGACTTTCGAGACGGATTTGATTCACGCCATTTTCAAGCTGGTCTGGTCCAGAAGAGCTCTCGAGCGTCAGTTAGTTGAAGGCACCGAAGCTTTGGACGGCGAGGTGCAGGTGGGAGCTGGAACATCGAAGAAGAATCGGCCGATGTCAGCTAATGCGAATGCCTTGAAATTGAGTTGCGAACTTCTGCGAAACTTTGTCACAGAGGCTGTGCAGCGCGCTGCTGCGATTGCTGAGGCGGAGGGCACAGATAAGATTGAGGCAACTCACTTGGAGCGGATTCTCCCGCAGTTGCTTTTGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-X

Protein Analysis

107

Amino Acids

11.79

Weight (kDa)

5.02

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-X	PF09415	49 - 106	1.2e-15	CENP-S associating Centromere protein X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78790 AT1G78790 AT1G78790 AT1G78790
fragaria_vesca	FvH4_5g06690
prunus_persica	Prupe.5G161600_v2.0.a1
pyrus_communis	pycom06g14440
rosa_chinensis	RchiOBHm_Chr7g0191941
rosa_laevigata	RLG00000004416
rosa_multiflora	Rmu_ssc0000421.1_g000017
rosa_rugosa	Rorug06G0511800
rosa_samantha	Rh7AG122100 Rh7BG123700 Rh7CG126300 Rh7DG125300
rosa_wichuraiana	Rw7G010390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AccB1I	GGYRCC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	289
AccII	CGCG	1 cut(s)	231
AciI	CCGC	3 cut(s)	251, 289, 299
AcoI	YGGCCR	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	49, 92, 181
AluBI	AGCT	5 cut(s)	52, 71, 104, 131, 164
AluI	AGCT	5 cut(s)	52, 71, 104, 131, 164
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	152
ApeKI	GCWGC	3 cut(s)	226, 233, 236
AspLEI	GCGC	2 cut(s)	231, 233
AspS9I	GGNCC	1 cut(s)	60
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	3 cut(s)	220, 223, 238
BceAI	ACGGC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	3 cut(s)	227, 234, 237
BlsI	GCNGC	3 cut(s)	228, 235, 238
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	246
BseMII	CTCAG	1 cut(s)	237
BsePI	GCGCGC	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	260
BseX3I	CGGCCG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	220, 223, 238
BsgI	GTGCAG	2 cut(s)	140, 245
Bsh1236I	CGCG	1 cut(s)	231
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	154
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	154
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	73, 260
BspACI	CCGC	3 cut(s)	251, 289, 299
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	238
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	97
BspMI	ACCTGC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	289
BssHII	GCGCGC	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	61
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	246
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	231, 233
BstMAI	GTCTC	1 cut(s)	17
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	220, 223, 238
BstZI	CGGCCG	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	2 cut(s)	231, 233
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	68
CviJI	RGCY	7 cut(s)	52, 71, 104, 131, 154, 164, 221
CviKI_1	RGCY	7 cut(s)	52, 71, 104, 131, 154, 164, 221
DdeI	CTNAG	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	152
EagI	CGGCCG	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	266
Ecl136II	GAGCTC	1 cut(s)	71
EclXI	CGGCCG	1 cut(s)	152
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	17
FauI	CCCGC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	227, 234, 237
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	3 cut(s)	227, 234, 237
GlaI	GCGC	2 cut(s)	230, 232
GluI	GCNGC	3 cut(s)	227, 234, 237
HaeIII	GGCC	1 cut(s)	154
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	2 cut(s)	231, 233
Hin6I	GCGC	2 cut(s)	229, 231
HinP1I	GCGC	2 cut(s)	229, 231
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	3 cut(s)	34, 148, 292
Hpy188III	TCNNGA	3 cut(s)	22, 63, 74
HpyAV	CCTTC	1 cut(s)	86
HpyCH4V	TGCA	2 cut(s)	121, 226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpyF3I	CTNAG	1 cut(s)	246
HspAI	GCGC	2 cut(s)	229, 231
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	128, 286
LpnPI	CCDG	6 cut(s)	26, 38, 43, 76, 107, 117
Lsp1109I	GCAGC	3 cut(s)	220, 223, 238
MaeIII	GTNAC	1 cut(s)	211
MbiI	CCGCTC	1 cut(s)	289
MboII	GAAGA	3 cut(s)	78, 154, 157
MhlI	GDGCHC	2 cut(s)	73, 260
MluCI	AATT	1 cut(s)	182
MnlI	CCTC	5 cut(s)	109, 211, 241, 247, 265
Mva1269I	GAATGC	1 cut(s)	178
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	242
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	211
PaeR7I	CTCGAG	1 cut(s)	74
PaqCI	CACCTGC	1 cut(s)	112
PauI	GCGCGC	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	3 cut(s)	34, 148, 292
PkrI	GCNGC	3 cut(s)	228, 235, 238
Psp124BI	GAGCTC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	221
PteI	GCGCGC	1 cut(s)	229
SacI	GAGCTC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	61
SatI	GCNGC	3 cut(s)	227, 234, 237
Sau96I	GGNCC	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	73, 260
SetI	ASST	7 cut(s)	54, 73, 106, 120, 126, 133, 166
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	3 cut(s)	251, 289, 299
SstI	GAGCTC	1 cut(s)	73
TaqI	TCGA	3 cut(s)	21, 75, 140
TasI	AATT	1 cut(s)	182
TfiI	GAWTC	3 cut(s)	34, 148, 292
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	226, 233, 236
Tsp45I	GTSAC	1 cut(s)	211
TspGWI	ACGGA	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	60
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XhoI	CTCGAG	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.