Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0015243

Physical Location & Seq

Genomic Coordinates Forward (+)

9577644 .. 9579449

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG122100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGGAGGAGTACCAGACTTTCGAGACGGATCTGATTCACGCCATTTTCAAGCTCGTCTGGTCCAGAAGAGCTCTCGAGCGTCAGTTACTTGAAGGCACCGATGCTTTGGACGGCGAGGTGGGAGCTGGAACGTCGAAGAAAAATCGGCCGACGTCTGCTAATGCGAATGCTTTGAAATTGAGTTGTGAGCTTCTCCGAAACTTTGTCACAGAGGCTGTGCAGCTTGCTTTTGGATTTTTGAGGTATCAAAACTTGCTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000712 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0031297 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043240 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045005 GO:0045132 GO:0045143 GO:0046483 GO:0048285 GO:0051276 GO:0051304 GO:0051307 GO:0051321 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071821 GO:0071840 GO:0090304 GO:0097159 GO:0098813 GO:0140013 GO:1901360 GO:1901363 GO:1901576 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03460 map03460

Pfam Domains

Protein Families

CENP-X

Protein Analysis

87

Amino Acids

9.82

Weight (kDa)

5.76

Isoelectric Point (pI)

28.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78790 AT1G78790 AT1G78790 AT1G78790
fragaria_vesca	FvH4_5g06690
prunus_persica	Prupe.5G161600_v2.0.a1
pyrus_communis	pycom06g14440
rosa_chinensis	RchiOBHm_Chr7g0191941
rosa_laevigata	RLG00000004416
rosa_multiflora	Rmu_ssc0000421.1_g000017
rosa_rugosa	Rorug06G0511800
rosa_samantha	Rh7AG122100 Rh7BG123700 Rh7CG126300 Rh7DG125300
rosa_wichuraiana	Rw7G010390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	95
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	49, 92, 175
AluBI	AGCT	5 cut(s)	52, 71, 125, 190, 223
AluI	AGCT	5 cut(s)	52, 71, 125, 190, 223
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	60
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	232
BceAI	ACGGC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	17
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	20
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	95
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	257
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	28
BstMCI	CGRYCG	1 cut(s)	149
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	148
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	7 cut(s)	52, 71, 125, 148, 190, 215, 223
CviKI_1	RGCY	7 cut(s)	52, 71, 125, 148, 190, 215, 223
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	146
EagI	CGGCCG	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Ecl136II	GAGCTC	1 cut(s)	71
EclXI	CGGCCG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	152
HinfI	GANTC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	33, 197
Hpy188III	TCNNGA	3 cut(s)	22, 63, 74
Hpy99I	CGWCG	2 cut(s)	136, 154
HpyAV	CCTTC	1 cut(s)	86
HpyCH4IV	ACGT	2 cut(s)	131, 152
HpyCH4V	TGCA	1 cut(s)	220
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	2 cut(s)	131, 152
Hsp92I	GRCGYC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	28
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	4 cut(s)	26, 43, 76, 111
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	91
MaeII	ACGT	2 cut(s)	131, 152
MaeIII	GTNAC	2 cut(s)	84, 205
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	2 cut(s)	78, 148
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	73
MluCI	AATT	1 cut(s)	176
MnlI	CCTC	3 cut(s)	109, 205, 234
MseI	TTAA	1 cut(s)	262
Mva1269I	GAATGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	1 cut(s)	262
SatI	GCNGC	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	60
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	9 cut(s)	54, 73, 120, 127, 134, 155, 192, 225, 245
SfaNI	GCATC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	73
TaiI	ACGT	2 cut(s)	134, 155
TaqI	TCGA	3 cut(s)	21, 75, 134
TasI	AATT	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	262
Tru9I	TTAA	1 cut(s)	262
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.