Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016054

Physical Location & Seq

Genomic Coordinates Reverse (-)

30284890 .. 30286798

Gene Structure 1909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGCTCTTGTTGCGGCGACTCAATCGAGTTCGGATTGCTTCCCCTTACTCCGTTCGGCTTCTGTCAGTAAAACCTATTTCAAATGTCGATGATGCGAAGTTTCGATCTCAGGAAGAAGAAGATCAGTCCAGTTACGATCAGAAAACAGTATGCGAAGCTCTCACATGTTACAGCAACGATTGGCAAAAGGCGTTGGAGTTTTTCAACTGGGTCGAGAGAGAATCCGGATTCAGACATACCACCGAGACATTCAATCGGGTGATCGATATTCTGGGTAAGTATTTCGAGTTTGAAATTTCTTGGGCTTTGATTAACCGCATGATCGGAAACACGGAATCTGTGCCGAATCACGTCACGTTTCGTATAGTCTTTAAGCGTTATGTGACGGCTCATCTTGTTCAGGAGGCTATTGATGCGTATGATAAATTGGATGATTTCAATTTGAGAGATGAAACATCATTTTATAATCTGGTCGATGCGCTTTGCGAGCATAAACATGTGGTTGAAGCTGAAGAGCTTTGTTTTGGGAAGAATGTCATTGGTAATGGTTTTAGTGTGAGTAATACTAAGATTCATAATCTGATTCTTCGTGGGTGGTCGAAATTGGGATGGTGGGGTAAATGCAAGGAGTATTGGAAGAAGATGGATACTGAAGGTGTTACTAAGGATCTTTTTTCGTATTCCATTTACATGGATATCATGTGCAAGAGCGGGAAACCGTGGAAAGCTGTGAAGTTGTATAAGGAAATGAAGAGTAGAAGGATGAAACTCGATGTGGTTGCTTATAACACTGTGATTCGAGCCATTGGAGCGTCGCAAGGTGTTGAATTCGGTATCAGGGTATTTCGGGAGATGAGGGAAAGAGGTTGTGAACCTAATGTTGCGACTCATAACACAATCATTAAGCTTCTATGTGAAGACGGGAGGATGAGAGACGCGTATCGGATGCTTGATGAGATGCCTAAGAGAGGTTGTCAACCCGATTCGATTACTTACATGTGTCTCTTTTCCCGTTTGGAGAAACCGAGTGAGATCCTAAGTCTGTTTGGTAGGATGATAAGGAGTGGAGTGAGGCCAAAGATGGATACTTATGTGATGCTAATGAGGAAGTTTGAGAGATGGGGATTTCTTCAGCCGGTATTATATGTGTGGAAGACAATGAAAGAGTCTGGGGATACTCCTGATTCAGCGGCGTATAATGCTGTGATTGATGCGTTGATTCAGAAAGGAATGTTGGATATGGCTAGGGAATATGAGGAGGAAATGATCGAAAGAGGGCTATCTCCAAGGAGAAGGCCTGAGTTGGTAGAAAAGTCCTTGGACGAAACGCTTGTCTGTAGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

448

Amino Acids

52.51

Weight (kDa)

8.34

Isoelectric Point (pI)

40.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	223 - 268	3.7e-10	PPR repeat family
PPR_long	PF17177	235 - 336	3.2e-08	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	246 - 304	1e-10	Pentatricopeptide repeat domain
PPR_2	PF13041	258 - 305	2.5e-12	PPR repeat family
PPR_3	PF13812	280 - 335	2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	288 - 320	2e-12	PPR repeat
PPR_2	PF13041	294 - 339	7.9e-14	PPR repeat family
PPR	PF01535	296 - 325	9.7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80550
fragaria_vesca	FvH4_4g04420 FvH4_4g04420
malus_domestica	MD16G1225100.v1.1
prunus_persica	Prupe.1G046400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394981
rosa_laevigata	RLG00000009653
rosa_multiflora	Rmu_sc0005802.1_g000031
rosa_roxburghii	Rroxscaffold_5G00339960
rosa_rugosa	Rorug03G0360300.1
rosa_samantha	Rh4AG056200 Rh4BG054900 Rh4CG060800 Rh4DG052400
rosa_wichuraiana	Rw4G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	465, 786
AccBSI	CCGCTC	1 cut(s)	711
AccII	CGCG	1 cut(s)	938
AccIII	TCCGGA	1 cut(s)	224
AciI	CCGC	4 cut(s)	13, 316, 711, 1190
AclWI	GGATC	2 cut(s)	675, 1027
AcsI	RAATTY	2 cut(s)	294, 827
AcuI	CTGAAG	3 cut(s)	531, 672, 1115
AfiI	CCNNNNNNNGG	1 cut(s)	968
AflIII	ACRYGT	4 cut(s)	164, 496, 936, 996
AgsI	TTSAA	7 cut(s)	81, 205, 253, 293, 439, 506, 827
AjiI	CACGTC	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	2 cut(s)	1217, 1249
AluBI	AGCT	5 cut(s)	158, 509, 517, 728, 907
AluI	AGCT	5 cut(s)	158, 509, 517, 728, 907
Alw26I	GTCTC	3 cut(s)	239, 927, 1007
AlwI	GGATC	2 cut(s)	675, 1027
Aor13HI	TCCGGA	1 cut(s)	224
AoxI	GGCC	2 cut(s)	1073, 1295
ApoI	RAATTY	2 cut(s)	294, 827
ArsI	GACNNNNNNTTYG	1 cut(s)	1317
AspLEI	GCGC	1 cut(s)	481
AsuHPI	GGTGA	1 cut(s)	271
BaeI	ACNNNNGTAYC	2 cut(s)	1077, 1110
BbsI	GAAGAC	2 cut(s)	924, 1160
BccI	CCATC	4 cut(s)	603, 637, 1075, 1113
BceAI	ACGGC	1 cut(s)	402
BcgI	CGANNNNNNTGC	2 cut(s)	761, 795
BciVI	GTATCC	3 cut(s)	640, 1078, 1168
BcoDI	GTCTC	3 cut(s)	239, 927, 1007
BfaI	CTAG	1 cut(s)	1245
BfmI	CTRYAG	1 cut(s)	1336
BfuI	GTATCC	3 cut(s)	640, 1078, 1168
BisI	GCNGC	2 cut(s)	14, 1191
BlsI	GCNGC	2 cut(s)	15, 1192
BmgBI	CACGTC	1 cut(s)	352
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	7 cut(s)	82, 403, 466, 936, 948, 1086, 1201
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	2 cut(s)	924, 1160
Bsa29I	ATCGAT	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	719, 1286, 1317
BsaWI	WCCGGW	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	968
Bse118I	RCCGGY	1 cut(s)	1135
Bse1I	ACTGG	2 cut(s)	129, 212
BseAI	TCCGGA	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	264
BseDI	CCNNGG	3 cut(s)	719, 1286, 1317
BseGI	GGATG	6 cut(s)	436, 614, 768, 933, 951, 1059
BseLI	CCNNNNNNNGG	1 cut(s)	968
BseMII	CTCAG	2 cut(s)	122, 1290
BseNI	ACTGG	2 cut(s)	129, 212
BseRI	GAGGAG	1 cut(s)	1271
Bsh1236I	CGCG	1 cut(s)	938
BshFI	GGCC	2 cut(s)	1075, 1297
BshVI	ATCGAT	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	225, 1136
BslI	CCNNNNNNNGG	1 cut(s)	968
BsmAI	GTCTC	3 cut(s)	239, 927, 1007
BsmBI	CGTCTC	1 cut(s)	927
BsnI	GGCC	2 cut(s)	1075, 1297
Bsp13I	TCCGGA	1 cut(s)	224
Bsp143I	GATC	8 cut(s)	104, 121, 136, 261, 321, 667, 1032, 1266
BspACI	CCGC	4 cut(s)	13, 316, 711, 1190
BspANI	GGCC	2 cut(s)	1075, 1297
BspCNI	CTCAG	2 cut(s)	121, 1291
BspDI	ATCGAT	1 cut(s)	264
BspEI	TCCGGA	1 cut(s)	224
BspFNI	CGCG	1 cut(s)	938
BspPI	GGATC	2 cut(s)	675, 1027
BspQI	GCTCTTC	1 cut(s)	507
BsrBI	CCGCTC	1 cut(s)	711
BsrFI	RCCGGY	1 cut(s)	1135
BsrI	ACTGG	2 cut(s)	129, 212
BssAI	RCCGGY	1 cut(s)	1135
BssECI	CCNNGG	3 cut(s)	719, 1286, 1317
BssMI	GATC	8 cut(s)	104, 121, 136, 261, 321, 667, 1032, 1266
BssT1I	CCWWGG	2 cut(s)	1286, 1317
Bst4CI	ACNGT	3 cut(s)	148, 720, 793
Bst6I	CTCTTC	2 cut(s)	507, 746
BstC8I	GCNNGC	1 cut(s)	488
BstDEI	CTNAG	6 cut(s)	108, 567, 663, 963, 1037, 1299
BstDSI	CCRYGG	1 cut(s)	719
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstF5I	GGATG	6 cut(s)	436, 614, 768, 933, 951, 1059
BstFNI	CGCG	1 cut(s)	938
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	8 cut(s)	107, 124, 139, 264, 324, 670, 1035, 1269
BstMAI	GTCTC	3 cut(s)	239, 927, 1007
BstMBI	GATC	8 cut(s)	104, 121, 136, 261, 321, 667, 1032, 1266
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 413, 487, 809, 1199
BstNSI	RCATGY	3 cut(s)	168, 500, 1000
BstSFI	CTRYAG	1 cut(s)	1336
BstUI	CGCG	1 cut(s)	938
BstV2I	GAAGAC	2 cut(s)	924, 1160
BstX2I	RGATCY	2 cut(s)	667, 1032
BstXI	CCANNNNNNTGG	1 cut(s)	691
BstYI	RGATCY	2 cut(s)	667, 1032
Bsu15I	ATCGAT	1 cut(s)	264
BsuI	GTATCC	3 cut(s)	640, 1078, 1168
BsuRI	GGCC	2 cut(s)	1075, 1297
BsuTUI	ATCGAT	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	719
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	6 cut(s)	436, 614, 768, 933, 951, 1059
BtsIMutI	CAGTG	1 cut(s)	789
Cac8I	GCNNGC	1 cut(s)	488
CfoI	GCGC	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	1135
ClaI	ATCGAT	1 cut(s)	264
CseI	GACGC	2 cut(s)	801, 944
CviAII	CATG	6 cut(s)	165, 319, 497, 691, 700, 997
DdeI	CTNAG	6 cut(s)	108, 567, 663, 963, 1037, 1299
DpnI	GATC	8 cut(s)	106, 123, 138, 263, 323, 669, 1034, 1268
DpnII	GATC	8 cut(s)	104, 121, 136, 261, 321, 667, 1032, 1266
Eam1104I	CTCTTC	2 cut(s)	507, 746
EarI	CTCTTC	2 cut(s)	507, 746
Eco130I	CCWWGG	2 cut(s)	1286, 1317
Eco147I	AGGCCT	1 cut(s)	1297
Eco32I	GATATC	1 cut(s)	697
Eco57I	CTGAAG	3 cut(s)	531, 672, 1115
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoRI	GAATTC	1 cut(s)	827
EcoRV	GATATC	1 cut(s)	697
EcoT14I	CCWWGG	2 cut(s)	1286, 1317
ErhI	CCWWGG	2 cut(s)	1286, 1317
Esp3I	CGTCTC	1 cut(s)	927
FaeI	CATG	6 cut(s)	168, 322, 500, 694, 703, 1000
FatI	CATG	6 cut(s)	164, 318, 496, 690, 699, 996
FauI	CCCGC	1 cut(s)	704
Fnu4HI	GCNGC	2 cut(s)	14, 1191
FokI	GGATG	6 cut(s)	443, 621, 775, 940, 958, 1066
Fsp4HI	GCNGC	2 cut(s)	14, 1191
FspBI	CTAG	1 cut(s)	1245
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	2 cut(s)	14, 1191
HaeIII	GGCC	2 cut(s)	1075, 1297
HapII	CCGG	2 cut(s)	225, 1136
HgaI	GACGC	2 cut(s)	801, 944
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	6 cut(s)	168, 322, 500, 694, 703, 1000
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	1 cut(s)	977
HindII	GTYRAC	1 cut(s)	977
HindIII	AAGCTT	1 cut(s)	905
HpaII	CCGG	2 cut(s)	225, 1136
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	2 cut(s)	872, 977
Hpy188I	TCNGA	7 cut(s)	33, 141, 233, 326, 582, 945, 1224
Hpy188III	TCNNGA	6 cut(s)	110, 214, 225, 401, 848, 1181
Hpy8I	GTNNAC	2 cut(s)	872, 977
Hpy99I	CGWCG	1 cut(s)	817
HpyAV	CCTTC	3 cut(s)	647, 753, 1287
HpyCH4III	ACNGT	3 cut(s)	148, 720, 793
HpyCH4IV	ACGT	2 cut(s)	351, 356
HpyCH4V	TGCA	2 cut(s)	624, 705
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 413, 487, 809, 1199
HpyF3I	CTNAG	6 cut(s)	108, 567, 663, 963, 1037, 1299
HpySE526I	ACGT	2 cut(s)	351, 356
Hsp92II	CATG	6 cut(s)	168, 322, 500, 694, 703, 1000
HspAI	GCGC	1 cut(s)	479
Kpn2I	TCCGGA	1 cut(s)	224
Kzo9I	GATC	8 cut(s)	104, 121, 136, 261, 321, 667, 1032, 1266
LguI	GCTCTTC	1 cut(s)	507
LmnI	GCTCC	1 cut(s)	809
LweI	GCATC	7 cut(s)	82, 403, 466, 936, 948, 1086, 1201
MaeI	CTAG	1 cut(s)	1245
MaeII	ACGT	2 cut(s)	351, 356
MaeIII	GTNAC	5 cut(s)	131, 167, 352, 382, 658
MalI	GATC	8 cut(s)	106, 123, 138, 263, 323, 669, 1034, 1268
MbiI	CCGCTC	1 cut(s)	711
MboI	GATC	8 cut(s)	104, 121, 136, 261, 321, 667, 1032, 1266
MflI	RGATCY	2 cut(s)	667, 1032
MluCI	AATT	5 cut(s)	294, 425, 439, 602, 827
MluI	ACGCGT	1 cut(s)	936
MlyI	GAGTC	3 cut(s)	12, 880, 1175
MmeI	TCCRAC	2 cut(s)	174, 1215
MroI	TCCGGA	1 cut(s)	224
MseI	TTAA	3 cut(s)	312, 372, 903
MslI	CAYNNNNRTG	2 cut(s)	495, 689
MspA1I	CMGCKG	1 cut(s)	1190
MspI	CCGG	2 cut(s)	225, 1136
MvnI	CGCG	1 cut(s)	938
MwoI	GCNNNNNNNGC	5 cut(s)	10, 413, 487, 809, 1199
NdeII	GATC	8 cut(s)	104, 121, 136, 261, 321, 667, 1032, 1266
NlaIII	CATG	6 cut(s)	168, 322, 500, 694, 703, 1000
NmuCI	GTSAC	2 cut(s)	352, 382
NspI	RCATGY	3 cut(s)	168, 500, 1000
PceI	AGGCCT	1 cut(s)	1297
PciI	ACATGT	3 cut(s)	164, 496, 996
PciSI	GCTCTTC	1 cut(s)	507
PkrI	GCNGC	2 cut(s)	15, 1192
PleI	GAGTC	3 cut(s)	12, 880, 1174
PpsI	GAGTC	3 cut(s)	12, 880, 1174
PscI	ACATGT	3 cut(s)	164, 496, 996
PsiI	TTATAA	2 cut(s)	465, 786
PsuI	RGATCY	2 cut(s)	667, 1032
RseI	CAYNNNNRTG	2 cut(s)	495, 689
SapI	GCTCTTC	1 cut(s)	507
SaqAI	TTAA	3 cut(s)	312, 372, 903
SatI	GCNGC	2 cut(s)	14, 1191
Sau3AI	GATC	8 cut(s)	104, 121, 136, 261, 321, 667, 1032, 1266
SchI	GAGTC	3 cut(s)	12, 880, 1175
SfaNI	GCATC	7 cut(s)	82, 403, 466, 936, 948, 1086, 1201
SfcI	CTRYAG	1 cut(s)	1336
SmiMI	CAYNNNNRTG	2 cut(s)	495, 689
Sse9I	AATT	5 cut(s)	294, 425, 439, 602, 827
SseBI	AGGCCT	1 cut(s)	1297
SsiI	CCGC	4 cut(s)	13, 316, 711, 1190
SspMI	CTAG	1 cut(s)	1245
StuI	AGGCCT	1 cut(s)	1297
StyI	CCWWGG	2 cut(s)	1286, 1317
TaaI	ACNGT	3 cut(s)	148, 720, 793
TaiI	ACGT	2 cut(s)	354, 359
TasI	AATT	5 cut(s)	294, 425, 439, 602, 827
TauI	GCSGC	2 cut(s)	16, 1193
Tru1I	TTAA	3 cut(s)	312, 372, 903
Tru9I	TTAA	3 cut(s)	312, 372, 903
TscAI	CASTG	1 cut(s)	796
TseFI	GTSAC	2 cut(s)	352, 382
Tsp45I	GTSAC	2 cut(s)	352, 382
TspDTI	ATGAA	5 cut(s)	465, 563, 764, 779, 1175
TspGWI	ACGGA	2 cut(s)	40, 347
TspRI	CASTG	1 cut(s)	796
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	2 cut(s)	294, 827
XceI	RCATGY	3 cut(s)	168, 500, 1000
XspI	CTAG	1 cut(s)	1245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.