Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G80550 |
| fragaria_vesca | FvH4_4g04420 FvH4_4g04420 |
| malus_domestica | MD16G1225100.v1.1 |
| prunus_persica | Prupe.1G046400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0394981 |
| rosa_laevigata | RLG00000009653 |
| rosa_multiflora | Rmu_sc0005802.1_g000031 |
| rosa_roxburghii | Rroxscaffold_5G00339960 |
| rosa_rugosa | Rorug03G0360300.1 |
| rosa_samantha | Rh4AG056200 Rh4BG054900 Rh4CG060800 Rh4DG052400 |
| rosa_wichuraiana | Rw4G004500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 450, 926 |
| AccI | GTMKAC | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 143 |
| AclWI | GGATC | 1 cut(s) | 794 |
| AfaI | GTAC | 2 cut(s) | 589, 764 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 24, 175, 430, 905, 992 |
| AgsI | TTSAA | 9 cut(s) | 12, 156, 344, 475, 536, 625, 708, 858, 1097 |
| AhlI | ACTAGT | 1 cut(s) | 1339 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 206, 238, 554, 586 |
| AleI | CACNNNNGTG | 2 cut(s) | 176, 1115 |
| AluBI | AGCT | 5 cut(s) | 325, 437, 595, 931, 1310 |
| AluI | AGCT | 5 cut(s) | 325, 437, 595, 931, 1310 |
| Alw21I | GWGCWC | 1 cut(s) | 327 |
| Alw26I | GTCTC | 2 cut(s) | 25, 476 |
| AlwI | GGATC | 1 cut(s) | 794 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 368 |
| AspA2I | CCTAGG | 1 cut(s) | 986 |
| AsuNHI | GCTAGC | 1 cut(s) | 1291 |
| AvrII | CCTAGG | 1 cut(s) | 986 |
| BanII | GRGCYC | 1 cut(s) | 327 |
| Bbv12I | GWGCWC | 1 cut(s) | 327 |
| BccI | CCATC | 7 cut(s) | 661, 836, 985, 1099, 1137, 1177, 1355 |
| BceAI | ACGGC | 2 cut(s) | 41, 727 |
| BclI | TGATCA | 1 cut(s) | 376 |
| BcoDI | GTCTC | 2 cut(s) | 25, 476 |
| BcuI | ACTAGT | 1 cut(s) | 1339 |
| BfaI | CTAG | 5 cut(s) | 987, 1040, 1269, 1292, 1340 |
| BfmI | CTRYAG | 1 cut(s) | 438 |
| BlnI | CCTAGG | 1 cut(s) | 986 |
| BlpI | GCTNAGC | 1 cut(s) | 1311 |
| BmcAI | AGTACT | 1 cut(s) | 589 |
| BmrI | ACTGGG | 1 cut(s) | 356 |
| BmsI | GCATC | 5 cut(s) | 496, 1045, 1110, 1225, 1278 |
| BmtI | GCTAGC | 1 cut(s) | 1295 |
| BmuI | ACTGGG | 1 cut(s) | 356 |
| Bpu10I | CCTNAGC | 1 cut(s) | 869 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1311 |
| Bsa29I | ATCGAT | 1 cut(s) | 1233 |
| BsaI | GGTCTC | 2 cut(s) | 25, 476 |
| BsaJI | CCNNGG | 5 cut(s) | 174, 222, 743, 986, 1316 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 24, 175, 430, 905, 992 |
| Bse1I | ACTGG | 4 cut(s) | 215, 242, 362, 798 |
| Bse3DI | GCAATG | 2 cut(s) | 211, 1021 |
| BseCI | ATCGAT | 1 cut(s) | 1233 |
| BseDI | CCNNGG | 5 cut(s) | 174, 222, 743, 986, 1316 |
| BseGI | GGATG | 5 cut(s) | 484, 802, 996, 1083, 1188 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 24, 175, 430, 905, 992 |
| BseMI | GCAATG | 2 cut(s) | 211, 1021 |
| BseMII | CTCAG | 2 cut(s) | 20, 1168 |
| BseNI | ACTGG | 4 cut(s) | 215, 242, 362, 798 |
| BseRI | GAGGAG | 1 cut(s) | 1337 |
| BshVI | ATCGAT | 1 cut(s) | 1233 |
| BsiHKAI | GWGCWC | 1 cut(s) | 327 |
| BslFI | GGGAC | 3 cut(s) | 665, 922, 1345 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 24, 175, 430, 905, 992 |
| BsmAI | GTCTC | 2 cut(s) | 25, 476 |
| BsmFI | GGGAC | 3 cut(s) | 665, 922, 1345 |
| BsmI | GAATGC | 1 cut(s) | 697 |
| Bso31I | GGTCTC | 2 cut(s) | 25, 476 |
| Bsp1286I | GDGCHC | 1 cut(s) | 327 |
| Bsp1407I | TGTACA | 1 cut(s) | 762 |
| Bsp143I | GATC | 2 cut(s) | 376, 786 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1311 |
| BspACI | CCGC | 1 cut(s) | 143 |
| BspCNI | CTCAG | 2 cut(s) | 21, 1167 |
| BspDI | ATCGAT | 1 cut(s) | 1233 |
| BspOI | GCTAGC | 1 cut(s) | 1295 |
| BspPI | GGATC | 1 cut(s) | 794 |
| BspTNI | GGTCTC | 2 cut(s) | 25, 476 |
| BsrDI | GCAATG | 2 cut(s) | 211, 1021 |
| BsrGI | TGTACA | 1 cut(s) | 762 |
| BsrI | ACTGG | 4 cut(s) | 215, 242, 362, 798 |
| BssECI | CCNNGG | 5 cut(s) | 174, 222, 743, 986, 1316 |
| BssMI | GATC | 2 cut(s) | 376, 786 |
| BssNAI | GTATAC | 1 cut(s) | 395 |
| BssT1I | CCWWGG | 3 cut(s) | 222, 986, 1316 |
| Bst1107I | GTATAC | 1 cut(s) | 395 |
| Bst4CI | ACNGT | 5 cut(s) | 178, 274, 399, 817, 1068 |
| Bst6I | CTCTTC | 4 cut(s) | 90, 456, 657, 1278 |
| BstAUI | TGTACA | 1 cut(s) | 762 |
| BstC8I | GCNNGC | 2 cut(s) | 290, 1293 |
| BstDEI | CTNAG | 6 cut(s) | 29, 591, 869, 1061, 1154, 1311 |
| BstDSI | CCRYGG | 2 cut(s) | 174, 743 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 428 |
| BstF5I | GGATG | 5 cut(s) | 484, 802, 996, 1083, 1188 |
| BstKTI | GATC | 2 cut(s) | 379, 789 |
| BstMAI | GTCTC | 2 cut(s) | 25, 476 |
| BstMBI | GATC | 2 cut(s) | 376, 786 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 187, 1223 |
| BstNSI | RCATGY | 2 cut(s) | 292, 530 |
| BstSFI | CTRYAG | 1 cut(s) | 438 |
| BstZ17I | GTATAC | 1 cut(s) | 395 |
| Bsu15I | ATCGAT | 1 cut(s) | 1233 |
| BsuTUI | ATCGAT | 1 cut(s) | 1233 |
| BtgI | CCRYGG | 2 cut(s) | 174, 743 |
| BtsCI | GGATG | 5 cut(s) | 484, 802, 996, 1083, 1188 |
| BtsI | GCAGTG | 1 cut(s) | 1354 |
| BtsIMutI | CAGTG | 2 cut(s) | 270, 1354 |
| Cac8I | GCNNGC | 2 cut(s) | 290, 1293 |
| CaiI | CAGNNNCTG | 1 cut(s) | 368 |
| ClaI | ATCGAT | 1 cut(s) | 1233 |
| Csp6I | GTAC | 2 cut(s) | 588, 763 |
| CviAII | CATG | 3 cut(s) | 289, 527, 1264 |
| CviQI | GTAC | 2 cut(s) | 588, 763 |
| DdeI | CTNAG | 6 cut(s) | 29, 591, 869, 1061, 1154, 1311 |
| DpnI | GATC | 2 cut(s) | 378, 788 |
| DpnII | GATC | 2 cut(s) | 376, 786 |
| Eam1104I | CTCTTC | 4 cut(s) | 90, 456, 657, 1278 |
| EarI | CTCTTC | 4 cut(s) | 90, 456, 657, 1278 |
| Ecl136II | GAGCTC | 1 cut(s) | 325 |
| Eco130I | CCWWGG | 3 cut(s) | 222, 986, 1316 |
| Eco24I | GRGCYC | 1 cut(s) | 327 |
| Eco31I | GGTCTC | 2 cut(s) | 25, 476 |
| Eco53kI | GAGCTC | 1 cut(s) | 325 |
| EcoICRI | GAGCTC | 1 cut(s) | 325 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 428 |
| EcoT14I | CCWWGG | 3 cut(s) | 222, 986, 1316 |
| EcoT38I | GRGCYC | 1 cut(s) | 327 |
| ErhI | CCWWGG | 3 cut(s) | 222, 986, 1316 |
| FaeI | CATG | 3 cut(s) | 292, 530, 1267 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 206, 238 |
| FaqI | GGGAC | 3 cut(s) | 665, 922, 1345 |
| FatI | CATG | 3 cut(s) | 288, 526, 1263 |
| FbaI | TGATCA | 1 cut(s) | 376 |
| FblI | GTMKAC | 1 cut(s) | 394 |
| FokI | GGATG | 5 cut(s) | 491, 809, 1003, 1090, 1195 |
| FriOI | GRGCYC | 1 cut(s) | 327 |
| FspBI | CTAG | 5 cut(s) | 987, 1040, 1269, 1292, 1340 |
| Hin1II | CATG | 3 cut(s) | 292, 530, 1267 |
| HincII | GTYRAC | 1 cut(s) | 896 |
| HindII | GTYRAC | 1 cut(s) | 896 |
| HindIII | AAGCTT | 1 cut(s) | 929 |
| HinfI | GANTC | 5 cut(s) | 118, 1057, 1149, 1211, 1352 |
| Hpy166II | GTNNAC | 2 cut(s) | 395, 896 |
| Hpy188I | TCNGA | 3 cut(s) | 841, 1157, 1357 |
| Hpy188III | TCNNGA | 4 cut(s) | 374, 907, 1040, 1205 |
| Hpy8I | GTNNAC | 2 cut(s) | 395, 896 |
| HpyAV | CCTTC | 3 cut(s) | 469, 742, 874 |
| HpyCH4III | ACNGT | 5 cut(s) | 178, 274, 399, 817, 1068 |
| HpyCH4IV | ACGT | 1 cut(s) | 911 |
| HpyCH4V | TGCA | 4 cut(s) | 204, 697, 729, 1026 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 187, 1223 |
| HpyF3I | CTNAG | 6 cut(s) | 29, 591, 869, 1061, 1154, 1311 |
| HpySE526I | ACGT | 1 cut(s) | 911 |
| Hsp92II | CATG | 3 cut(s) | 292, 530, 1267 |
| Ksp22I | TGATCA | 1 cut(s) | 376 |
| Kzo9I | GATC | 2 cut(s) | 376, 786 |
| LweI | GCATC | 5 cut(s) | 496, 1045, 1110, 1225, 1278 |
| MaeI | CTAG | 5 cut(s) | 987, 1040, 1269, 1292, 1340 |
| MaeII | ACGT | 1 cut(s) | 911 |
| MaeIII | GTNAC | 3 cut(s) | 56, 254, 274 |
| MalI | GATC | 2 cut(s) | 378, 788 |
| MboI | GATC | 2 cut(s) | 376, 786 |
| MhlI | GDGCHC | 1 cut(s) | 327 |
| MluCI | AATT | 7 cut(s) | 12, 159, 339, 545, 601, 884, 921 |
| MlyI | GAGTC | 1 cut(s) | 1220 |
| MmeI | TCCRAC | 1 cut(s) | 311 |
| MseI | TTAA | 5 cut(s) | 234, 338, 402, 1032, 1229 |
| MslI | CAYNNNNRTG | 2 cut(s) | 176, 1115 |
| Mva1269I | GAATGC | 1 cut(s) | 697 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 187, 1223 |
| NdeII | GATC | 2 cut(s) | 376, 786 |
| NheI | GCTAGC | 1 cut(s) | 1291 |
| NlaIII | CATG | 3 cut(s) | 292, 530, 1267 |
| NmuCI | GTSAC | 2 cut(s) | 56, 254 |
| NspI | RCATGY | 2 cut(s) | 292, 530 |
| OliI | CACNNNNGTG | 2 cut(s) | 176, 1115 |
| PaeI | GCATGC | 1 cut(s) | 292 |
| PctI | GAATGC | 1 cut(s) | 697 |
| PfeI | GAWTC | 4 cut(s) | 118, 1057, 1149, 1352 |
| PleI | GAGTC | 1 cut(s) | 1219 |
| PpsI | GAGTC | 1 cut(s) | 1219 |
| PsiI | TTATAA | 2 cut(s) | 450, 926 |
| Psp124BI | GAGCTC | 1 cut(s) | 327 |
| PstNI | CAGNNNCTG | 1 cut(s) | 368 |
| RsaI | GTAC | 2 cut(s) | 589, 764 |
| RsaNI | GTAC | 2 cut(s) | 588, 763 |
| RseI | CAYNNNNRTG | 2 cut(s) | 176, 1115 |
| SacI | GAGCTC | 1 cut(s) | 327 |
| SaqAI | TTAA | 5 cut(s) | 234, 338, 402, 1032, 1229 |
| Sau3AI | GATC | 2 cut(s) | 376, 786 |
| ScaI | AGTACT | 1 cut(s) | 589 |
| SchI | GAGTC | 1 cut(s) | 1220 |
| SduI | GDGCHC | 1 cut(s) | 327 |
| SfaNI | GCATC | 5 cut(s) | 496, 1045, 1110, 1225, 1278 |
| SfcI | CTRYAG | 1 cut(s) | 438 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 176, 1115 |
| SpeI | ACTAGT | 1 cut(s) | 1339 |
| SphI | GCATGC | 1 cut(s) | 292 |
| Sse9I | AATT | 7 cut(s) | 12, 159, 339, 545, 601, 884, 921 |
| SsiI | CCGC | 1 cut(s) | 143 |
| SspMI | CTAG | 5 cut(s) | 987, 1040, 1269, 1292, 1340 |
| SstI | GAGCTC | 1 cut(s) | 327 |
| StyI | CCWWGG | 3 cut(s) | 222, 986, 1316 |
| TaaI | ACNGT | 5 cut(s) | 178, 274, 399, 817, 1068 |
| TaiI | ACGT | 1 cut(s) | 914 |
| TaqI | TCGA | 2 cut(s) | 116, 1233 |
| TasI | AATT | 7 cut(s) | 12, 159, 339, 545, 601, 884, 921 |
| TatI | WGTACW | 2 cut(s) | 587, 762 |
| TfiI | GAWTC | 4 cut(s) | 118, 1057, 1149, 1352 |
| Tru1I | TTAA | 5 cut(s) | 234, 338, 402, 1032, 1229 |
| Tru9I | TTAA | 5 cut(s) | 234, 338, 402, 1032, 1229 |
| TscAI | CASTG | 2 cut(s) | 277, 1354 |
| TseFI | GTSAC | 2 cut(s) | 56, 254 |
| Tsp45I | GTSAC | 2 cut(s) | 56, 254 |
| TspDTI | ATGAA | 6 cut(s) | 38, 365, 788, 893, 965, 1296 |
| TspGWI | ACGGA | 1 cut(s) | 44 |
| TspRI | CASTG | 2 cut(s) | 277, 1354 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 428 |
| XbaI | TCTAGA | 1 cut(s) | 1039 |
| XceI | RCATGY | 2 cut(s) | 292, 530 |
| XmaJI | CCTAGG | 1 cut(s) | 986 |
| XmiI | GTMKAC | 1 cut(s) | 394 |
| XspI | CTAG | 5 cut(s) | 987, 1040, 1269, 1292, 1340 |
| ZrmI | AGTACT | 1 cut(s) | 589 |