Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016054

Physical Location & Seq

Genomic Coordinates Forward (+)

3787437 .. 3790631

Gene Structure 3195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g04420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGGGAGGAGAAGGATCATCCCATGTTTGTTTTGTTTTTCACTTCTATACAATGCTCTCTTCCCGAACCGCTCAACGCCTCAGACCCTTTCTTCTTCCCCACACTCAAACCCTCGTATTCTCCTCACTCCCCACCAAACCCATCTCAATTCCCAATCCAACAGACCCATACCCACAACCATCTTCACCAATTTACGACCACACCACTGTTCGTGAAACCCTCTCTTCTTACTGCAATGACTGGAAGAAAGCCCTCGACTTTTTCATCTGGGTCGAGTCCCAGCCCCACTTCCAACACACCACCGAAACCTACAACCGACTTCTCGACATTCTCGGTAAGTACTTCGAGTTTGAGCTTTGTTGGGACTTAGTTCACAAAATGAAACAGAACCCACTTTGTGTTCCTGACCACACCACATTTCGTATAATGTTTAAGAGATATGTTTCTGCACATCTTGTAAAAGAAGCTATAGATACTTATAATAAGTTGGATGAGTTTGGTTTGAAGGATGAGACTTCTTATTGCAATCTCGTTGATGCTCTTTGTGAGCATAAGCATGTGATTGAGGCCCAAGAGTTGTGTTCTTGGAAGAACAAGGAATTGGGTTTTGATAGGAGTACTAAATTACATAATATAATTCTTCGCGGGTGGTCGAAAATGGGGTGGTGGGGGAAGTGTAGGGATTTTTGGGAAGAGATGGATAGAAGAGGTGTTTGTAAGGATTTGCATTCGTATTCGATATATATGGATATAATGTGTAAGAGTGGGAAGGCGTGGAAGGCGGTGAAGTTGTATAAGGAGGTGAAGAGGAAACGGATTAAGCTGGATGTGGTGGCGTATAATACAGTTATTGGAGCTGTTGGTGCTTCTGAGGGGGTTGATTTTGCAATTCGGATCTTAAGGGAGATGAAGGAATTGGGATGTGACCCCAATATTGTGACATATAATACGATTATAAAGCTTTTGTGTGAGAATATGAGAGTCAGGGAGGCATTCTCGATGCTTCGAGTAATGTCTAAGAACAGTTGTGGCCCGGATGTTATTACTTACCAAATCATTTTTAAGTATCTGGAGAAGCCAAATGAGATTCTTAGGCTGTTTGATAGGATGATTGAAAGTGGGGTTCAGCCGAGAATGGACACTTATGTGATGATTATGAGGAAGTTTGGGAGATGGGGCTTCCTTAGACCAATGTTTATTGTGTGGCAGAAGATGGAAAAACTTGGGTGTAGTCCTAATGAGTCTGCTTACAATGCTTTAATAGATGCTCTGGTGGAAAAGGGTATGTTAGACATGGCTAGGAAGTACGATGAAGAGATGATAGCAAAGGGGCTTCCAACTAGGCCAAGGGTGGAGTTGGGGACAAAACTGGTGAGTAATGAATTTGATGAAGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

466

Amino Acids

54.34

Weight (kDa)

8.59

Isoelectric Point (pI)

38.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	101 - 147	3.3e-06	PPR repeat family
PPR_2	PF13041	241 - 286	1.5e-07	PPR repeat family
PPR_long	PF17177	248 - 352	5.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	264 - 322	1.5e-13	Pentatricopeptide repeat domain
PPR_2	PF13041	276 - 323	6.1e-13	PPR repeat family
PPR_3	PF13812	298 - 355	3.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	307 - 338	2.5e-11	PPR repeat
PPR_2	PF13041	310 - 356	1.9e-14	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80550
fragaria_vesca	FvH4_4g04420 FvH4_4g04420
malus_domestica	MD16G1225100.v1.1
prunus_persica	Prupe.1G046400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394981
rosa_laevigata	RLG00000009653
rosa_multiflora	Rmu_sc0005802.1_g000031
rosa_roxburghii	Rroxscaffold_5G00339960
rosa_rugosa	Rorug03G0360300.1
rosa_samantha	Rh4AG056200 Rh4BG054900 Rh4CG060800 Rh4DG052400
rosa_wichuraiana	Rw4G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	480, 956
AccBSI	CCGCTC	1 cut(s)	71
AccII	CGCG	1 cut(s)	645
AciI	CCGC	3 cut(s)	69, 645, 782
AclWI	GGATC	2 cut(s)	22, 902
AcsI	RAATTY	1 cut(s)	1382
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	3 cut(s)	341, 619, 1307
AflII	CTTAAG	1 cut(s)	898
AgsI	TTSAA	2 cut(s)	505, 1115
AjuI	GAANNNNNNNTTGG	2 cut(s)	584, 616
AleI	CACNNNNGTG	1 cut(s)	1145
AluBI	AGCT	5 cut(s)	355, 467, 823, 857, 961
AluI	AGCT	5 cut(s)	355, 467, 823, 857, 961
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	2 cut(s)	22, 902
AoxI	GGCC	3 cut(s)	567, 1030, 1343
ApoI	RAATTY	1 cut(s)	1382
AspS9I	GGNCC	2 cut(s)	568, 1031
AsuC2I	CCSGG	1 cut(s)	1034
AsuHPI	GGTGA	4 cut(s)	177, 796, 814, 1384
BccI	CCATC	5 cut(s)	149, 187, 691, 1167, 1207
BcnI	CCSGG	1 cut(s)	1034
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	2 cut(s)	1299, 1341
BfmI	CTRYAG	1 cut(s)	468
BfrI	CTTAAG	1 cut(s)	898
BmcAI	AGTACT	2 cut(s)	341, 619
Bme1390I	CCNGG	1 cut(s)	1034
BmgT120I	GGNCC	2 cut(s)	568, 1031
BmrFI	CCNGG	1 cut(s)	1034
BmsI	GCATC	3 cut(s)	526, 990, 1255
BplI	GAGNNNNNCTC	2 cut(s)	980, 1012
BpmI	CTGGAG	1 cut(s)	1091
BpuMI	CCSGG	1 cut(s)	1034
BsaJI	CCNNGG	1 cut(s)	1346
Bse1I	ACTGG	2 cut(s)	245, 1374
Bse3DI	GCAATG	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	1346
BseGI	GGATG	7 cut(s)	17, 496, 514, 832, 926, 1042, 1113
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	2 cut(s)	94, 861
BseNI	ACTGG	2 cut(s)	245, 1374
BseRI	GAGGAG	2 cut(s)	21, 112
BseYI	CCCAGC	1 cut(s)	279
BsgI	GTGCAG	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	645
BshFI	GGCC	3 cut(s)	569, 1032, 1345
BsiSI	CCGG	1 cut(s)	1034
BslFI	GGGAC	3 cut(s)	262, 377, 1375
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	3 cut(s)	262, 377, 1375
BsmI	GAATGC	2 cut(s)	727, 992
BsnI	GGCC	3 cut(s)	569, 1032, 1345
Bsp143I	GATC	2 cut(s)	14, 894
BspACI	CCGC	3 cut(s)	69, 645, 782
BspANI	GGCC	3 cut(s)	569, 1032, 1345
BspCNI	CTCAG	2 cut(s)	93, 862
BspFNI	CGCG	1 cut(s)	645
BspPI	GGATC	2 cut(s)	22, 902
BspTI	CTTAAG	1 cut(s)	898
BsrBI	CCGCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	245, 1374
BssECI	CCNNGG	1 cut(s)	1346
BssMI	GATC	2 cut(s)	14, 894
BssT1I	CCWWGG	1 cut(s)	1346
Bst4CI	ACNGT	3 cut(s)	208, 847, 1025
Bst6I	CTCTTC	6 cut(s)	64, 229, 687, 700, 800, 1308
BstAFI	CTTAAG	1 cut(s)	898
BstDEI	CTNAG	6 cut(s)	80, 367, 870, 1017, 1091, 1184
BstF5I	GGATG	7 cut(s)	17, 496, 514, 832, 926, 1042, 1113
BstFNI	CGCG	1 cut(s)	645
BstKTI	GATC	2 cut(s)	17, 897
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	14, 894
BstMWI	GCNNNNNNNGC	3 cut(s)	779, 863, 1253
BstNSI	RCATGY	1 cut(s)	560
BstSCI	CCNGG	1 cut(s)	1032
BstSFI	CTRYAG	1 cut(s)	468
BstUI	CGCG	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	894
BstYI	RGATCY	1 cut(s)	894
BsuRI	GGCC	3 cut(s)	569, 1032, 1345
BtsCI	GGATG	7 cut(s)	17, 496, 514, 832, 926, 1042, 1113
BtsIMutI	CAGTG	1 cut(s)	204
Cfr13I	GGNCC	2 cut(s)	568, 1031
Csp6I	GTAC	3 cut(s)	340, 618, 1306
CviAII	CATG	3 cut(s)	23, 557, 1294
CviQI	GTAC	3 cut(s)	340, 618, 1306
DdeI	CTNAG	6 cut(s)	80, 367, 870, 1017, 1091, 1184
DpnI	GATC	2 cut(s)	16, 896
DpnII	GATC	2 cut(s)	14, 894
DraIII	CACNNNGTG	1 cut(s)	398
Eam1104I	CTCTTC	6 cut(s)	64, 229, 687, 700, 800, 1308
EarI	CTCTTC	6 cut(s)	64, 229, 687, 700, 800, 1308
Eco130I	CCWWGG	1 cut(s)	1346
EcoT14I	CCWWGG	1 cut(s)	1346
ErhI	CCWWGG	1 cut(s)	1346
FaeI	CATG	3 cut(s)	26, 560, 1297
FaqI	GGGAC	3 cut(s)	262, 377, 1375
FatI	CATG	3 cut(s)	22, 556, 1293
FauI	CCCGC	1 cut(s)	638
FokI	GGATG	7 cut(s)	4, 503, 521, 839, 933, 1049, 1120
FspBI	CTAG	2 cut(s)	1299, 1341
GsaI	CCCAGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	1091
HaeIII	GGCC	3 cut(s)	569, 1032, 1345
HapII	CCGG	1 cut(s)	1034
Hin1II	CATG	3 cut(s)	26, 560, 1297
HindIII	AAGCTT	1 cut(s)	959
HinfI	GANTC	4 cut(s)	275, 981, 1087, 1241
HpaII	CCGG	1 cut(s)	1034
HphI	GGTGA	4 cut(s)	177, 796, 814, 1384
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	3 cut(s)	83, 871, 894
Hpy188III	TCNNGA	6 cut(s)	63, 212, 323, 404, 997, 1070
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	6 cut(s)	5, 499, 763, 772, 904, 1385
HpyCH4III	ACNGT	3 cut(s)	208, 847, 1025
HpyCH4V	TGCA	5 cut(s)	234, 449, 525, 727, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	779, 863, 1253
HpyF3I	CTNAG	6 cut(s)	80, 367, 870, 1017, 1091, 1184
Hsp92II	CATG	3 cut(s)	26, 560, 1297
Kzo9I	GATC	2 cut(s)	14, 894
LmnI	GCTCC	1 cut(s)	854
LweI	GCATC	3 cut(s)	526, 990, 1255
MaeI	CTAG	2 cut(s)	1299, 1341
MaeIII	GTNAC	2 cut(s)	923, 937
MalI	GATC	2 cut(s)	16, 896
MbiI	CCGCTC	1 cut(s)	71
MboI	GATC	2 cut(s)	14, 894
MflI	RGATCY	1 cut(s)	894
MluCI	AATT	8 cut(s)	147, 189, 599, 623, 636, 888, 914, 1382
MlyI	GAGTC	3 cut(s)	284, 990, 1250
MmeI	TCCRAC	4 cut(s)	182, 316, 468, 1361
MseI	TTAA	5 cut(s)	432, 819, 899, 1062, 1259
MslI	CAYNNNNRTG	2 cut(s)	555, 1145
MspCI	CTTAAG	1 cut(s)	898
MspI	CCGG	1 cut(s)	1034
MspR9I	CCNGG	1 cut(s)	1034
Mva1269I	GAATGC	2 cut(s)	727, 992
MvnI	CGCG	1 cut(s)	645
MwoI	GCNNNNNNNGC	3 cut(s)	779, 863, 1253
NciI	CCSGG	1 cut(s)	1034
NdeII	GATC	2 cut(s)	14, 894
NlaIII	CATG	3 cut(s)	26, 560, 1297
NmeAIII	GCCGAG	1 cut(s)	1155
NmuCI	GTSAC	2 cut(s)	923, 937
NspI	RCATGY	1 cut(s)	560
OliI	CACNNNNGTG	1 cut(s)	1145
PctI	GAATGC	2 cut(s)	727, 992
PfeI	GAWTC	1 cut(s)	1087
PleI	GAGTC	3 cut(s)	283, 989, 1249
PpsI	GAGTC	3 cut(s)	283, 989, 1249
PsiI	TTATAA	2 cut(s)	480, 956
PspFI	CCCAGC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	568, 1031
PsuI	RGATCY	1 cut(s)	894
RsaI	GTAC	3 cut(s)	341, 619, 1307
RsaNI	GTAC	3 cut(s)	340, 618, 1306
RseI	CAYNNNNRTG	2 cut(s)	555, 1145
SaqAI	TTAA	5 cut(s)	432, 819, 899, 1062, 1259
Sau3AI	GATC	2 cut(s)	14, 894
Sau96I	GGNCC	2 cut(s)	568, 1031
ScaI	AGTACT	2 cut(s)	341, 619
SchI	GAGTC	3 cut(s)	284, 990, 1250
ScrFI	CCNGG	1 cut(s)	1034
SetI	ASST	8 cut(s)	311, 357, 469, 712, 804, 825, 859, 963
SfaNI	GCATC	3 cut(s)	526, 990, 1255
SfcI	CTRYAG	1 cut(s)	468
SmiMI	CAYNNNNRTG	2 cut(s)	555, 1145
SmlI	CTYRAG	1 cut(s)	898
SmoI	CTYRAG	1 cut(s)	898
Sse9I	AATT	8 cut(s)	147, 189, 599, 623, 636, 888, 914, 1382
SsiI	CCGC	3 cut(s)	69, 645, 782
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	2 cut(s)	1299, 1341
StyD4I	CCNGG	1 cut(s)	1032
StyI	CCWWGG	1 cut(s)	1346
TaaI	ACNGT	3 cut(s)	208, 847, 1025
TaqI	TCGA	8 cut(s)	255, 273, 324, 345, 653, 737, 998, 1006
TasI	AATT	8 cut(s)	147, 189, 599, 623, 636, 888, 914, 1382
TatI	WGTACW	2 cut(s)	339, 617
TfiI	GAWTC	1 cut(s)	1087
Tru1I	TTAA	5 cut(s)	432, 819, 899, 1062, 1259
Tru9I	TTAA	5 cut(s)	432, 819, 899, 1062, 1259
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	2 cut(s)	923, 937
Tsp45I	GTSAC	2 cut(s)	923, 937
TspDTI	ATGAA	5 cut(s)	253, 395, 923, 1326, 1395
TspGWI	ACGGA	1 cut(s)	829
TspRI	CASTG	1 cut(s)	211
Vha464I	CTTAAG	1 cut(s)	898
XapI	RAATTY	1 cut(s)	1382
XceI	RCATGY	1 cut(s)	560
XspI	CTAG	2 cut(s)	1299, 1341
ZrmI	AGTACT	2 cut(s)	341, 619

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.