Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0016054

Physical Location & Seq

Genomic Coordinates Forward (+)

22710828 .. 22713170

Gene Structure 2343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1225100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCTCTCTTCAGCAACCTCTCGACTCCTGAGACCTTTCCTTCTCCTCCGTCTCCGCCAAGCTCAAATCCTCTTGCATTCTTCGGTTCCTCACCCTGTTTCCTCCAAACCCTTTTCAACTCACACCCCCACCGACCCGGAACCCCAATCAAAACCCACTATATACGACCACACCGCCGTCCGCGAGACGCTTTCTTCATACTGCAACGACTGGAAGAAAGCCCTGGACTTCTTCACCTGGCTGGAAACTGACTGCCACTTCCAGCACACCACCGAGACATACAATCGGATGCTCGACATTCTCGGGACACTTCTGATGTGCATCAAGCACCGTCCGCAGGAAGCAACTCTGAAACCTTTCTCCAGAATCTTCTTCTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

128

Amino Acids

14.83

Weight (kDa)

8.91

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016054)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80550
fragaria_vesca	FvH4_4g04420 FvH4_4g04420
malus_domestica	MD16G1225100.v1.1
prunus_persica	Prupe.1G046400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0394981
rosa_laevigata	RLG00000009653
rosa_multiflora	Rmu_sc0005802.1_g000031
rosa_roxburghii	Rroxscaffold_5G00339960
rosa_rugosa	Rorug03G0360300.1
rosa_samantha	Rh4AG056200 Rh4BG054900 Rh4CG060800 Rh4DG052400
rosa_wichuraiana	Rw4G004500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	183
AciI	CCGC	4 cut(s)	55, 174, 181, 335
AfiI	CCNNNNNNNGG	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	117
AjnI	CCWGG	2 cut(s)	222, 236
AluBI	AGCT	1 cut(s)	62
AluI	AGCT	1 cut(s)	62
Alw26I	GTCTC	4 cut(s)	25, 56, 179, 269
Ama87I	CYCGRG	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	356
AsuC2I	CCSGG	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	83, 226
AvaI	CYCGRG	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	2 cut(s)	224, 238
BcnI	CCSGG	1 cut(s)	137
BcoDI	GTCTC	4 cut(s)	25, 56, 179, 269
Bme1390I	CCNGG	3 cut(s)	137, 224, 238
BmeT110I	CYCGRG	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	87, 141
BmrFI	CCNGG	3 cut(s)	137, 224, 238
BmsI	GCATC	2 cut(s)	279, 330
BpmI	CTGGAG	1 cut(s)	346
BpuMI	CCSGG	1 cut(s)	137
BsaBI	GATNNNNATC	1 cut(s)	320
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	320
BseBI	CCWGG	2 cut(s)	224, 238
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	4 cut(s)	25, 56, 179, 269
BsmBI	CGTCTC	2 cut(s)	56, 179
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	76
Bso31I	GGTCTC	1 cut(s)	25
BsoBI	CYCGRG	1 cut(s)	302
BspACI	CCGC	4 cut(s)	55, 174, 181, 335
BspCNI	CTCAG	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	87, 141
BspTNI	GGTCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	224, 238
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	294
BstFNI	CGCG	1 cut(s)	183
BstMAI	GTCTC	4 cut(s)	25, 56, 179, 269
BstMWI	GCNNNNNNNGC	1 cut(s)	334
BstNI	CCWGG	2 cut(s)	224, 238
BstSCI	CCNGG	3 cut(s)	135, 222, 236
BstUI	CGCG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	294
CseI	GACGC	1 cut(s)	196
CviJI	RGCY	3 cut(s)	62, 221, 241
CviKI_1	RGCY	3 cut(s)	62, 221, 241
DdeI	CTNAG	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
EciI	GGCGGA	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	222, 236
Esp3I	CGTCTC	2 cut(s)	56, 179
FaiI	YATR	5 cut(s)	161, 163, 199, 280, 382
FaqI	GGGAC	1 cut(s)	319
FokI	GGATG	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	346
HapII	CCGG	1 cut(s)	137
HgaI	GACGC	1 cut(s)	196
HinfI	GANTC	2 cut(s)	24, 366
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	83, 226
Hpy188I	TCNGA	3 cut(s)	288, 315, 351
Hpy188III	TCNNGA	4 cut(s)	21, 28, 304, 363
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	76, 204, 321
HpyF10VI	GCNNNNNNNGC	1 cut(s)	334
HpyF3I	CTNAG	1 cut(s)	29
LweI	GCATC	2 cut(s)	279, 330
MboII	GAAGA	7 cut(s)	72, 186, 223, 226, 361, 364, 367
MlyI	GAGTC	1 cut(s)	18
MnlI	CCTC	5 cut(s)	28, 56, 80, 99, 112
MroXI	GAANNNNTTC	1 cut(s)	356
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	3 cut(s)	137, 224, 238
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	2 cut(s)	224, 238
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	334
NciI	CCSGG	1 cut(s)	137
NlaIV	GGNNCC	2 cut(s)	87, 141
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	1 cut(s)	366
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp6I	CCWGG	2 cut(s)	222, 236
PspGI	CCWGG	2 cut(s)	222, 236
PspN4I	GGNNCC	2 cut(s)	87, 141
SchI	GAGTC	1 cut(s)	18
ScrFI	CCNGG	3 cut(s)	137, 224, 238
SetI	ASST	5 cut(s)	20, 37, 64, 239, 358
SfaNI	GCATC	2 cut(s)	279, 330
SsiI	CCGC	4 cut(s)	55, 174, 181, 335
StyD4I	CCNGG	3 cut(s)	135, 222, 236
TaaI	ACNGT	1 cut(s)	332
TaqI	TCGA	2 cut(s)	22, 294
TfiI	GAWTC	1 cut(s)	366
TspDTI	ATGAA	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	38
XmnI	GAANNNNTTC	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.