Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014527

Physical Location & Seq

Genomic Coordinates Reverse (-)

30387978 .. 30389434

Gene Structure 1457 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGATTATTGGCCGCGATCGGAGTTCTGTTGCCATTTCCGTTCTACTGGTGGCTGTGGACGAATGCTCAGTCATGGGTCAATCTCTGCGGCCGAGAAAGAGACCCATCGACGGTAATGGCACGTGTTTCTCACGTGCTCAAGGCTGCTCAACTCCTTTCTCTCTTCTCCGTTGCTTCTCTCTCCTGGCCGCCTCCGCTCTACTTCTGGCCTCTCATGGCCTTTGGCCAGTTTCTCAACTTCAGGGTATACCAATTGTTAGGTGAAGCTGGGACTTATTACGGTGTTCGATTCGGGAAGAACATACCATGGGTTACAGAGTTCCCATTTGGAGTCATTAGAGATCCACAGTATGTTGGGAGTATCATGTCTCTATTGGCATGCCTCTCTTGGGTTCCATTTCAATACATTCTCCTCTGGTCTCTCGGTTATGTTTTCATGATGTTTCTCGAGTCAAAGGAGGATCCAAATGCTCGTGCCAAATCCATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000773 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009987 GO:0016740 GO:0016741 GO:0019637 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044464 GO:0071704 GO:0080101 GO:0090407 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00564 ko01100 ko01110 map00564 map01100 map01110

Pfam Domains

Protein Families

PEMT

Protein Analysis

164

Amino Acids

18.82

Weight (kDa)

8.97

Isoelectric Point (pI)

37.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEMT	PF04191	72 - 150	3.6e-12	Phospholipid methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014527)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80860 AT1G80860
fragaria_vesca	FvH4_6g28630
malus_domestica	MD17G1223400.v1.1 MD17G1223600.v1.1
prunus_persica	Prupe.3G098300_v2.0.a1
pyrus_communis	pycom17g22740
rosa_chinensis	RchiOBHm_Chr2g0132951
rosa_laevigata	RLG00000019296
rosa_multiflora	Rmu_sc0007314.1_g000002
rosa_roxburghii	Rroxscaffold_2G00111590
rosa_rugosa	Rorug02G0308700
rosa_samantha	Rh2AG361200 Rh2BG367000 Rh2CG344400 Rh2DG384000
rosa_wichuraiana	Rw2G029370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	199
AccI	GTMKAC	1 cut(s)	249
AccII	CGCG	1 cut(s)	17
AciI	CCGC	4 cut(s)	15, 90, 191, 197
AclWI	GGATC	3 cut(s)	338, 458, 471
AcoI	YGGCCR	4 cut(s)	12, 91, 188, 226
AcuI	CTGAAG	1 cut(s)	226
AcvI	CACGTG	2 cut(s)	125, 136
AfiI	CCNNNNNNNGG	2 cut(s)	112, 391
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	404
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	1 cut(s)	269
AluI	AGCT	1 cut(s)	269
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	3 cut(s)	96, 375, 426
AlwI	GGATC	3 cut(s)	338, 458, 471
Ama87I	CYCGRG	1 cut(s)	449
AoxI	GGCC	6 cut(s)	12, 91, 188, 209, 219, 226
ApeKI	GCWGC	1 cut(s)	146
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
AsuHPI	GGTGA	1 cut(s)	275
AvaI	CYCGRG	1 cut(s)	449
BalI	TGGCCA	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	463
BauI	CACGAG	1 cut(s)	474
BbrPI	CACGTG	2 cut(s)	125, 136
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	115, 494
BciT130I	CCWGG	1 cut(s)	187
BcoDI	GTCTC	3 cut(s)	96, 375, 426
BisI	GCNGC	4 cut(s)	15, 91, 147, 191
BlsI	GCNGC	4 cut(s)	16, 92, 148, 192
Bme1390I	CCNGG	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	396, 465
BmrFI	CCNGG	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	125
BsaAI	YACGTR	2 cut(s)	125, 136
BsaI	GGTCTC	2 cut(s)	96, 426
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 391
Bse1I	ACTGG	2 cut(s)	53, 229
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	308
BseLI	CCNNNNNNNGG	2 cut(s)	112, 391
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	2 cut(s)	53, 229
BseRI	GAGGAG	1 cut(s)	404
BseX3I	CGGCCG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	133
BseYI	CCCAGC	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	17
Bsh1285I	CGRYCG	2 cut(s)	21, 94
BshFI	GGCC	6 cut(s)	14, 93, 190, 211, 221, 228
BsiEI	CGRYCG	2 cut(s)	21, 94
BsiHKAI	GWGCWC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	2 cut(s)	112, 391
BsmAI	GTCTC	3 cut(s)	96, 375, 426
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	6 cut(s)	14, 93, 190, 211, 221, 228
Bso31I	GGTCTC	2 cut(s)	96, 426
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	18, 343, 463
Bsp19I	CCATGG	1 cut(s)	308
BspACI	CCGC	4 cut(s)	15, 90, 191, 197
BspANI	GGCC	6 cut(s)	14, 93, 190, 211, 221, 228
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	17
BspHI	TCATGA	2 cut(s)	438, 491
BspLI	GGNNCC	2 cut(s)	396, 465
BspPI	GGATC	3 cut(s)	338, 458, 471
BspTNI	GGTCTC	2 cut(s)	96, 426
BsrBI	CCGCTC	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	53, 229
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	3 cut(s)	18, 343, 463
BssNAI	GTATAC	1 cut(s)	250
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	308
Bst1107I	GTATAC	1 cut(s)	250
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	3 cut(s)	115, 284, 351
Bst6I	CTCTTC	1 cut(s)	170
BstBAI	YACGTR	2 cut(s)	125, 136
BstC8I	GCNNGC	1 cut(s)	382
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	308
BstFNI	CGCG	1 cut(s)	17
BstKTI	GATC	3 cut(s)	21, 346, 466
BstMAI	GTCTC	3 cut(s)	96, 375, 426
BstMBI	GATC	3 cut(s)	18, 343, 463
BstMCI	CGRYCG	2 cut(s)	21, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	384
BstSCI	CCNGG	1 cut(s)	185
BstUI	CGCG	1 cut(s)	17
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	343, 463
BstYI	RGATCY	2 cut(s)	343, 463
BstZ17I	GTATAC	1 cut(s)	250
BstZI	CGGCCG	1 cut(s)	91
BsuRI	GGCC	6 cut(s)	14, 93, 190, 211, 221, 228
BtgI	CCRYGG	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	382
CciI	TCATGA	2 cut(s)	438, 491
CviAII	CATG	7 cut(s)	75, 217, 309, 367, 381, 439, 492
CviJI	RGCY	9 cut(s)	14, 55, 93, 146, 190, 211, 221, 228, 269
CviKI_1	RGCY	9 cut(s)	14, 55, 93, 146, 190, 211, 221, 228, 269
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	3 cut(s)	20, 345, 465
DpnII	GATC	3 cut(s)	18, 343, 463
EaeI	YGGCCR	4 cut(s)	12, 91, 188, 226
EagI	CGGCCG	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EclXI	CGGCCG	1 cut(s)	91
Eco130I	CCWWGG	1 cut(s)	308
Eco31I	GGTCTC	2 cut(s)	96, 426
Eco52I	CGGCCG	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	226
Eco72I	CACGTG	2 cut(s)	125, 136
Eco88I	CYCGRG	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	308
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	7 cut(s)	78, 220, 312, 370, 384, 442, 495
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	7 cut(s)	74, 216, 308, 366, 380, 438, 491
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	4 cut(s)	15, 91, 147, 191
Fsp4HI	GCNGC	4 cut(s)	15, 91, 147, 191
GluI	GCNGC	4 cut(s)	15, 91, 147, 191
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	6 cut(s)	14, 93, 190, 211, 221, 228
Hin1II	CATG	7 cut(s)	78, 220, 312, 370, 384, 442, 495
HinfI	GANTC	3 cut(s)	291, 333, 452
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	60, 250
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	4 cut(s)	295, 439, 449, 492
Hpy8I	GTNNAC	2 cut(s)	60, 250
Hpy99I	CGWCG	1 cut(s)	115
HpyCH4III	ACNGT	3 cut(s)	115, 284, 351
HpyCH4IV	ACGT	2 cut(s)	124, 135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	124, 135
Hsp92II	CATG	7 cut(s)	78, 220, 312, 370, 384, 442, 495
Kzo9I	GATC	3 cut(s)	18, 343, 463
LpnPI	CCDG	8 cut(s)	34, 172, 193, 199, 229, 242, 255, 403
Lsp1109I	GCAGC	1 cut(s)	133
MaeII	ACGT	2 cut(s)	124, 135
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	3 cut(s)	20, 345, 465
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	3 cut(s)	18, 343, 463
MboII	GAAGA	2 cut(s)	157, 310
MfeI	CAATTG	1 cut(s)	254
MflI	RGATCY	2 cut(s)	343, 463
MhlI	GDGCHC	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	1 cut(s)	254
MluNI	TGGCCA	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	342, 461
MnlI	CCTC	5 cut(s)	204, 222, 395, 425, 454
Mox20I	TGGCCA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	228
Msp20I	TGGCCA	1 cut(s)	228
MspR9I	CCNGG	1 cut(s)	187
MunI	CAATTG	1 cut(s)	254
Mva1269I	GAATGC	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	187
MvnI	CGCG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	18, 343, 463
NlaIII	CATG	7 cut(s)	78, 220, 312, 370, 384, 442, 495
NlaIV	GGNNCC	2 cut(s)	396, 465
NmeAIII	GCCGAG	1 cut(s)	119
NspI	RCATGY	1 cut(s)	384
PaeI	GCATGC	1 cut(s)	384
PaeR7I	CTCGAG	1 cut(s)	449
PagI	TCATGA	2 cut(s)	438, 491
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	291
PkrI	GCNGC	4 cut(s)	16, 92, 148, 192
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	2 cut(s)	341, 460
PmaCI	CACGTG	2 cut(s)	125, 136
PmlI	CACGTG	2 cut(s)	125, 136
PpsI	GAGTC	2 cut(s)	341, 460
Ppu21I	YACGTR	2 cut(s)	125, 136
Psp6I	CCWGG	1 cut(s)	185
PspCI	CACGTG	2 cut(s)	125, 136
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	185
PspN4I	GGNNCC	2 cut(s)	396, 465
PsuI	RGATCY	2 cut(s)	343, 463
PvuI	CGATCG	1 cut(s)	21
SatI	GCNGC	4 cut(s)	15, 91, 147, 191
Sau3AI	GATC	3 cut(s)	18, 343, 463
SchI	GAGTC	2 cut(s)	342, 461
ScrFI	CCNGG	1 cut(s)	187
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	4 cut(s)	127, 138, 265, 271
Sfr274I	CTCGAG	1 cut(s)	449
SlaI	CTCGAG	1 cut(s)	449
SmlI	CTYRAG	2 cut(s)	140, 449
SmoI	CTYRAG	2 cut(s)	140, 449
SphI	GCATGC	1 cut(s)	384
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	4 cut(s)	15, 90, 191, 197
StyD4I	CCNGG	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	3 cut(s)	115, 284, 351
TaiI	ACGT	2 cut(s)	127, 138
TaqI	TCGA	3 cut(s)	110, 289, 450
TasI	AATT	1 cut(s)	254
TauI	GCSGC	3 cut(s)	17, 93, 193
TfiI	GAWTC	1 cut(s)	291
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	427
TspGWI	ACGGA	2 cut(s)	30, 160
XceI	RCATGY	1 cut(s)	384
XhoI	CTCGAG	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.