AT2G01680

Ankyrin repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011272
Physical Location & Seq
Forward (+)
306251 .. 309267
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G01680.1

Sequence Viewer

Length: 1599 bp
ATGGAGATGAAGCAGATGAAGTTTCTTACTCACCAAGCTTTCTTTTCCTCTGTTCGATCAGGAGATCTTAGTCAACTTCAACAGTTAGTTGACAATTTAACCGGAGATGAGCTAATCGATGAGTCATCGCCGTGTTCTGCTGTGGCTGAGCTTATGTCTGTGCAAAACGACGCCGGAGAGACCGCCGTCTATATCTCCGCCGCAGAGAATCTTGAAGACATTTTTCGTTACTTGATTAGGTTTTCTAGTTTGGAAACAGTTAAGATCAGATCCAAATCCGACATGAACGCTTTTCATGTCGCTGCCAAGCGAGGTCACTTGGGAATTGTGAAGGAGTTACTGAGACTATGGCCAGAGCTTTGCAGAATCTGCGACGCTTCCAACACGAGTCCGCTTTACGCAGCTGCGGTTCAAGATCACTTAGAAATAGTAAATGCAATGCTTGATGTTGATCCTAGCTGTGCAATGATTGTGAGAAAGAACGGGAAAACATCTTTGCACACTGCGGGAAGGTACGGGCTTCTTCGGATAGTGAAAGCTCTCATAGAGAAAGACGCAGCGATTGTTGGTGTTAAAGATAAGAAAGGTCAGACTGCTCTTCACATGGCTGTTAAAGGACGAAGTTTGGAAGTAGTCGAAGAGATTTTGCAGGCTGATTACACAATATTGAATGAGAGAGATCGAAAAGGGAACACTGCTTTGCATATTGCTACTCGAAAGGCGCGGCCACAGATAACGAGCTTATTGCTGACCTTTACGGCGATTGAAGTGAATGCGATTAACAACCAGAAAGAAACTGCTATGGATTTGGCGGATAAGCTGCAATATAGCGAATCTGCTTTGGAGATCAATGAGGCTTTGGTAGAAGCTGGGGCTAAGCATGGGAGGTTCATTGGTCGAGAAGATGAGGCGAGAGCATTGAAGCGAGCAGTGAGTGATATCAAACACGAGGTGCAATCGCAGCTTTTGCAGAATGAGAAAACCAACCGTCGTGTCTCTGGGATCGCGAAAGAGCTGAGGAAACTCCACAGAGAAGCGGTTCAGAACACGACTAACTCCATAACGGTAGTGGCGGTTCTGTTTGCTTCCATAGCGTTCTTGGCCATATTCAACTTGCCGGGTCAGTATTTCACGGAGGGGTCGCATGTGGGACAAGCCAATATTGCAGGGAGAACCGGATTCCGCGTGTTCTGTCTTTTAAACGCGACATCTCTGTTTATATCGTTAGCGGTTGTGGTAGTTCAAATAACTTTGGTGGCGTGGGACACACGGGCGCAGAAGAAAGTTGTGTCTGTAGTGAATAAGCTAATGTGGGCAGCTTGTGCTTGCACATTCGGAGCATTTTTGGCGATTGCATTTGCGGTTGTTGGAAAGGGGAACTCGTGGATGGCGATTACCATAACGTTGCTTGGAGCACCGATCTTGGTAGGGACATTGGCAAGTATGTGTTATTTCGTGTTTCGGCAGCGGTTTAGGAGCGGCAACGATTCACAGAGAAGGATTAGGAGAGGGAGTAGTAAGTCGTTTTCATGGTCTTACTCTCATCATGTATCCGATTTTGAAGATGAATCAGATTTCGAGAAGATTATTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank Ank_2 Ank_4 PGG

Protein Analysis

532

Amino Acids

58.83

Weight (kDa)

8.86

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 52 - 114 9.6e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 91 - 149 3.5e-07 Ankyrin repeats (3 copies)
Ank_2 PF12796 123 - 187 6.3e-08 Ankyrin repeats (3 copies)
Ank_2 PF12796 133 - 220 1.2e-12 Ankyrin repeats (3 copies)
Ank_5 PF13857 181 - 237 8e-07 Ankyrin repeats (many copies)
Ank_2 PF12796 190 - 259 8.4e-10 Ankyrin repeats (3 copies)
PGG PF13962 345 - 454 6.7e-25 Domain of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011272)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G01680
fragaria_vesca FvH4_4g33630 FvH4_4g33630 FvH4_4g33630 FvH4_4g33630
malus_domestica MD13G1020700.v1.1 MD16G1019100.v1.1
prunus_persica Prupe.1G333000_v2.0.a1
pyrus_communis pycom11g04200 pycom13g01760 pycom16g01710
rosa_chinensis RchiOBHm_Chr4g0443091
rosa_laevigata RLG00000005954
rosa_roxburghii Rroxscaffold_5G00383720
rosa_rugosa Rorug04G0344300
rosa_samantha Rh4AG398700 Rh4BG410200 Rh4CG425700 Rh4DG405100
rosa_wichuraiana Rw4G034360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1479
AccII CGCG 4 cut(s) 724, 1007, 1185, 1205
AclI AACGTT 1 cut(s) 1403
AclWI GGATC 3 cut(s) 264, 446, 1010
AcoI YGGCCR 3 cut(s) 350, 725, 1101
AcyI GRCGYC 1 cut(s) 171
AdeI CACNNNGTG 1 cut(s) 952
AfaI GTAC 1 cut(s) 515
AgsI TTSAA 9 cut(s) 80, 215, 413, 670, 767, 922, 1111, 1244, 1562
Alw21I GWGCWC 1 cut(s) 1417
Alw26I GTCTC 3 cut(s) 173, 337, 1000
AlwI GGATC 3 cut(s) 264, 446, 1010
AlwNI CAGNNNCTG 1 cut(s) 369
AoxI GGCC 3 cut(s) 350, 725, 1101
ApeKI GCWGC 8 cut(s) 302, 401, 404, 557, 820, 961, 1316, 1465
Asp700I GAANNNNTTC 1 cut(s) 1038
AspLEI GCGC 2 cut(s) 724, 1276
AsuC2I CCSGG 1 cut(s) 1119
AsuHPI GGTGA 1 cut(s) 23
BalI TGGCCA 2 cut(s) 352, 1103
BauI CACGAG 3 cut(s) 385, 947, 1381
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 1417
BbvCI CCTCAGC 1 cut(s) 1016
BbvI GCAGC 8 cut(s) 289, 391, 413, 569, 807, 973, 1328, 1477
BccI CCATC 1 cut(s) 1381
BceAI ACGGC 3 cut(s) 115, 170, 774
BcgI CGANNNNNNTGC 2 cut(s) 727, 761
BciVI GTATCC 1 cut(s) 1561
BcnI CCSGG 1 cut(s) 1119
BcoDI GTCTC 3 cut(s) 173, 337, 1000
BfaI CTAG 2 cut(s) 246, 456
BfmI CTRYAG 1 cut(s) 1293
BfuI GTATCC 1 cut(s) 1561
BglII AGATCT 1 cut(s) 64
BlpI GCTNAGC 2 cut(s) 147, 876
Bme1390I CCNGG 1 cut(s) 1119
BmrFI CCNGG 1 cut(s) 1119
BoxI GACNNNNGTC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 1016
Bpu1102I GCTNAGC 2 cut(s) 147, 876
BpuMI CCSGG 1 cut(s) 1119
Bsa29I ATCGAT 1 cut(s) 117
BsaBI GATNNNNATC 2 cut(s) 274, 450
BsaHI GRCGYC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 173
BsaWI WCCGGW 2 cut(s) 101, 1175
BsaXI ACNNNNNCTCC 2 cut(s) 1498, 1528
Bse3DI GCAATG 2 cut(s) 444, 471
Bse8I GATNNNNATC 2 cut(s) 274, 450
BseCI ATCGAT 1 cut(s) 117
BseGI GGATG 1 cut(s) 1392
BseJI GATNNNNATC 2 cut(s) 274, 450
BseMI GCAATG 2 cut(s) 444, 471
BseMII CTCAG 3 cut(s) 138, 332, 1007
BseXI GCAGC 8 cut(s) 289, 391, 413, 569, 807, 973, 1328, 1477
BseYI CCCAGC 1 cut(s) 869
Bsh1236I CGCG 4 cut(s) 724, 1007, 1185, 1205
BshFI GGCC 3 cut(s) 352, 727, 1103
BshVI ATCGAT 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 1417
BsiSI CCGG 4 cut(s) 102, 174, 1118, 1176
BslFI GGGAC 3 cut(s) 1164, 1277, 1444
BsmAI GTCTC 3 cut(s) 173, 337, 1000
BsmFI GGGAC 3 cut(s) 1164, 1277, 1444
BsmI GAATGC 1 cut(s) 778
BsnI GGCC 3 cut(s) 352, 727, 1103
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 1417
Bsp1720I GCTNAGC 2 cut(s) 147, 876
Bsp68I TCGCGA 1 cut(s) 1007
BspANI GGCC 3 cut(s) 352, 727, 1103
BspCNI CTCAG 3 cut(s) 139, 333, 1008
BspDI ATCGAT 1 cut(s) 117
BspFNI CGCG 4 cut(s) 724, 1007, 1185, 1205
BspPI GGATC 3 cut(s) 264, 446, 1010
BspQI GCTCTTC 1 cut(s) 603
BspTNI GGTCTC 1 cut(s) 173
BsrBI CCGCTC 1 cut(s) 1479
BsrDI GCAATG 2 cut(s) 444, 471
BssNI GRCGYC 1 cut(s) 171
BssSI CACGAG 3 cut(s) 385, 947, 1381
Bst2BI CACGAG 3 cut(s) 385, 947, 1381
Bst4CI ACNGT 4 cut(s) 84, 259, 989, 1066
Bst6I CTCTTC 2 cut(s) 603, 633
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 3 cut(s) 369, 967, 1322
BstC8I GCNNGC 3 cut(s) 651, 927, 1327
BstDEI CTNAG 6 cut(s) 68, 147, 341, 421, 876, 1016
BstF5I GGATG 1 cut(s) 1392
BstFNI CGCG 4 cut(s) 724, 1007, 1185, 1205
BstHHI GCGC 2 cut(s) 724, 1276
BstMAI GTCTC 3 cut(s) 173, 337, 1000
BstMWI GCNNNNNNNGC 8 cut(s) 369, 961, 967, 1091, 1100, 1163, 1322, 1346
BstNSI RCATGY 1 cut(s) 1148
BstPAI GACNNNNGTC 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 1117
BstSFI CTRYAG 1 cut(s) 1293
BstUI CGCG 4 cut(s) 724, 1007, 1185, 1205
BstV1I GCAGC 8 cut(s) 289, 391, 413, 569, 807, 973, 1328, 1477
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 64, 269
BstYI RGATCY 2 cut(s) 64, 269
Bsu15I ATCGAT 1 cut(s) 117
BsuI GTATCC 1 cut(s) 1561
BsuRI GGCC 3 cut(s) 352, 727, 1103
BsuTUI ATCGAT 1 cut(s) 117
BtgZI GCGATG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 1392
BtsI GCAGTG 3 cut(s) 501, 693, 936
BtsIMutI CAGTG 3 cut(s) 501, 693, 936
BtuMI TCGCGA 1 cut(s) 1007
Cac8I GCNNGC 3 cut(s) 651, 927, 1327
CaiI CAGNNNCTG 1 cut(s) 369
CfoI GCGC 2 cut(s) 724, 1276
ClaI ATCGAT 1 cut(s) 117
CseI GACGC 3 cut(s) 179, 383, 563
Csp6I GTAC 1 cut(s) 514
CviAII CATG 7 cut(s) 283, 296, 604, 881, 1145, 1530, 1547
CviQI GTAC 1 cut(s) 514
DdeI CTNAG 6 cut(s) 68, 147, 341, 421, 876, 1016
DraI TTTAAA 1 cut(s) 1200
DraIII CACNNNGTG 1 cut(s) 952
EaeI YGGCCR 3 cut(s) 350, 725, 1101
Eam1104I CTCTTC 2 cut(s) 603, 633
EarI CTCTTC 2 cut(s) 603, 633
EciI GGCGGA 2 cut(s) 187, 827
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 940
EcoRV GATATC 1 cut(s) 940
FaeI CATG 7 cut(s) 286, 299, 607, 884, 1148, 1533, 1550
FaqI GGGAC 3 cut(s) 1164, 1277, 1444
FatI CATG 7 cut(s) 282, 295, 603, 880, 1144, 1529, 1546
FauI CCCGC 1 cut(s) 499
FokI GGATG 1 cut(s) 1399
FspBI CTAG 2 cut(s) 246, 456
GlaI GCGC 2 cut(s) 723, 1275
GsaI CCCAGC 1 cut(s) 873
HaeIII GGCC 3 cut(s) 352, 727, 1103
HapII CCGG 4 cut(s) 102, 174, 1118, 1176
HgaI GACGC 3 cut(s) 179, 383, 563
HhaI GCGC 2 cut(s) 724, 1276
Hin1I GRCGYC 1 cut(s) 171
Hin1II CATG 7 cut(s) 286, 299, 607, 884, 1148, 1533, 1550
Hin6I GCGC 2 cut(s) 722, 1274
HinP1I GCGC 2 cut(s) 722, 1274
HincII GTYRAC 2 cut(s) 74, 91
HindII GTYRAC 2 cut(s) 74, 91
HindIII AAGCTT 1 cut(s) 36
HinfI GANTC 8 cut(s) 122, 208, 366, 388, 833, 1179, 1487, 1568
HpaII CCGG 4 cut(s) 102, 174, 1118, 1176
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 74, 91
Hpy188I TCNGA 8 cut(s) 269, 280, 528, 591, 1044, 1337, 1555, 1573
Hpy188III TCNNGA 6 cut(s) 60, 212, 413, 899, 1006, 1579
Hpy8I GTNNAC 2 cut(s) 74, 91
Hpy99I CGWCG 3 cut(s) 173, 377, 993
HpyAV CCTTC 3 cut(s) 325, 504, 1491
HpyCH4III ACNGT 4 cut(s) 84, 259, 989, 1066
HpyCH4IV ACGT 1 cut(s) 1403
HpyF10VI GCNNNNNNNGC 8 cut(s) 369, 961, 967, 1091, 1100, 1163, 1322, 1346
HpyF3I CTNAG 6 cut(s) 68, 147, 341, 421, 876, 1016
HpySE526I ACGT 1 cut(s) 1403
Hsp92I GRCGYC 1 cut(s) 171
Hsp92II CATG 7 cut(s) 286, 299, 607, 884, 1148, 1533, 1550
HspAI GCGC 2 cut(s) 722, 1274
LguI GCTCTTC 1 cut(s) 603
LmnI GCTCC 3 cut(s) 1337, 1412, 1476
Lsp1109I GCAGC 8 cut(s) 289, 391, 413, 569, 807, 973, 1328, 1477
MaeI CTAG 2 cut(s) 246, 456
MaeII ACGT 1 cut(s) 1403
MaeIII GTNAC 3 cut(s) 227, 314, 336
MbiI CCGCTC 1 cut(s) 1479
MboII GAAGA 8 cut(s) 227, 515, 590, 650, 914, 1291, 1574, 1594
MflI RGATCY 2 cut(s) 64, 269
MhlI GDGCHC 1 cut(s) 1417
MlsI TGGCCA 2 cut(s) 352, 1103
MluCI AATT 2 cut(s) 94, 324
MluNI TGGCCA 2 cut(s) 352, 1103
MlyI GAGTC 2 cut(s) 131, 397
MmeI TCCRAC 3 cut(s) 303, 405, 1348
MnlI CCTC 9 cut(s) 58, 305, 847, 879, 901, 943, 1011, 1129, 1502
Mox20I TGGCCA 2 cut(s) 352, 1103
MroXI GAANNNNTTC 1 cut(s) 1038
MscI TGGCCA 2 cut(s) 352, 1103
MseI TTAA 6 cut(s) 98, 261, 573, 612, 780, 1199
MslI CAYNNNNRTG 1 cut(s) 130
Msp20I TGGCCA 2 cut(s) 352, 1103
MspA1I CMGCKG 2 cut(s) 404, 1468
MspI CCGG 4 cut(s) 102, 174, 1118, 1176
MspR9I CCNGG 1 cut(s) 1119
Mva1269I GAATGC 1 cut(s) 778
MvnI CGCG 4 cut(s) 724, 1007, 1185, 1205
MwoI GCNNNNNNNGC 8 cut(s) 369, 961, 967, 1091, 1100, 1163, 1322, 1346
NciI CCSGG 1 cut(s) 1119
NlaIII CATG 7 cut(s) 286, 299, 607, 884, 1148, 1533, 1550
NmuCI GTSAC 1 cut(s) 314
NruI TCGCGA 1 cut(s) 1007
NspI RCATGY 1 cut(s) 1148
PciSI GCTCTTC 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 1388
PctI GAATGC 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 6 cut(s) 208, 366, 833, 1179, 1487, 1568
PleI GAGTC 2 cut(s) 130, 396
PpsI GAGTC 2 cut(s) 130, 396
PshAI GACNNNNGTC 1 cut(s) 185
Psp1406I AACGTT 1 cut(s) 1403
PspFI CCCAGC 1 cut(s) 869
PsrI GAACNNNNNNTAC 2 cut(s) 1059, 1091
PstNI CAGNNNCTG 1 cut(s) 369
PsuI RGATCY 2 cut(s) 64, 269
PvuII CAGCTG 1 cut(s) 404
RruI TCGCGA 1 cut(s) 1007
RsaI GTAC 1 cut(s) 515
RsaNI GTAC 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 130
SapI GCTCTTC 1 cut(s) 603
SaqAI TTAA 6 cut(s) 98, 261, 573, 612, 780, 1199
SchI GAGTC 2 cut(s) 131, 397
ScrFI CCNGG 1 cut(s) 1119
SduI GDGCHC 1 cut(s) 1417
SfcI CTRYAG 1 cut(s) 1293
SmiMI CAYNNNNRTG 1 cut(s) 130
Sse9I AATT 2 cut(s) 94, 324
SspI AATATT 2 cut(s) 666, 1162
SspMI CTAG 2 cut(s) 246, 456
StyD4I CCNGG 1 cut(s) 1117
TaaI ACNGT 4 cut(s) 84, 259, 989, 1066
TaiI ACGT 1 cut(s) 1406
TaqI TCGA 7 cut(s) 55, 117, 636, 682, 715, 898, 1578
TasI AATT 2 cut(s) 94, 324
TauI GCSGC 3 cut(s) 203, 727, 1482
TfiI GAWTC 6 cut(s) 208, 366, 833, 1179, 1487, 1568
Tru1I TTAA 6 cut(s) 98, 261, 573, 612, 780, 1199
Tru9I TTAA 6 cut(s) 98, 261, 573, 612, 780, 1199
TscAI CASTG 3 cut(s) 508, 700, 936
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 8 cut(s) 302, 401, 404, 557, 820, 961, 1316, 1465
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 7 cut(s) 23, 32, 284, 299, 880, 1518, 1581
TspGWI ACGGA 1 cut(s) 1148
TspRI CASTG 3 cut(s) 508, 700, 936
XceI RCATGY 1 cut(s) 1148
XcmI CCANNNNNNNNNTGG 2 cut(s) 1066, 1096
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 2 cut(s) 246, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.