AT2G03200

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0017473
Physical Location & Seq
Reverse (-)
966390 .. 968048
1659 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03200.1

Sequence Viewer

Length: 1386 bp
ATGGCTTCTTCTTCTTCTTCTTCTTTATTATTTCCTTTCTTTCTTATTCTTTTTTCATGTTTAATCTCGGTTTCATCGTCAAGAAGATCATTAATCGACCGTACTCTTCCGAAAAACCTTCCGAGATCCGGTTTTCGATTGAGTCTTCGACATGTGGATTCCGGTAAAAACCTCACCAAGATCCAAAAGATTCAGAGAGGGATTAACCGTGGATTCCATAGATTAAACAGATTAGGAGCTGTAGCTGTTTTAGCTGTAGCCTCTAAGCCTGATGATACTAATAACATTAAAGCACCTACTCATGGAGGAAGCGGTGAGTTTCTTATGGAGTTGTCTATTGGAAACCCGGCGGTTAAATACTCTGCTATTGTTGATACCGGAAGTGACCTTATTTGGACTCAATGCAAGCCTTGCACTGAATGTTTTGATCAACCAACTCCGATTTTTGACCCGGAGAAATCTTCCTCTTACTCGAAAGTAGGATGCTCTTCTGGTCTTTGTAACGCATTGCCTCGATCAAACTGTAACGAAGATAAAGATGCTTGTGAGTATTTGTATACTTATGGAGATTACTCATCTACAAGAGGGCTCTTGGCCACGGAAACGTTCACTTTCGAGGACGAGAACTCGATTTCTGGTATCGGGTTTGGGTGTGGGGTTGAGAACGAAGGCGACGGGTTCTCTCAAGGGTCAGGTCTTGTAGGTCTTGGTCGCGGACCGCTCTCGCTTATTTCTCAGCTCAAAGAGACTAAGTTTTCTTATTGCTTGACCTCGATTGAGGATAGTGAAGCATCTAGCTCGTTGTTTATTGGATCTTTAGCCTCGGGTATCGTCAACAAAACAGGTGCAAGTTTAGATGGTGAAGTCACCAAAACGATGTCTTTGCTACGAAATCCAGATCAGCCTTCGTTCTATTACCTTGAGTTACAAGGCATCACCGTTGGAGCAAAACGCCTTTCTGTTGAAAAGTCTACTTTTGAACTAGCCGAAGATGGAACCGGAGGTATGATCATAGACTCAGGCACGACCATCACGTATCTCGAGGAGACCGCGTTTAAAGTGTTGAAAGAGGAGTTTACTTCTCGGATGAGTTTACCAGTAGATGACTCTGGATCCACGGGACTTGACTTGTGCTTCAAGTTACCTGATGCTGCCAAGAATATTGCTGTTCCTAAGATGATTTTTCATTTTAAAGGTGCTGATTTGGAGCTTCCCGGAGAGAACTACATGGTGGCGGATTCAAGCACCGGCGTTTTGTGTTTGGCCATGGGAAGTTCTAATGGGATGTCTATTTTCGGAAATGTTCAACAGCAGAATTTTAATGTACTTCATGATCTTGAGAAAGAAACGGTGTCGTTTGTTCCCACTGAATGTGGAAAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

461

Amino Acids

49.59

Weight (kDa)

5.07

Isoelectric Point (pI)

41.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 107 - 272 8.6e-51 Xylanase inhibitor N-terminal
Asp PF00026 107 - 161 6.5e-06 Eukaryotic aspartyl protease
Asp PF00026 186 - 454 7.5e-09 Eukaryotic aspartyl protease
TAXi_C PF14541 305 - 454 2.2e-33 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03200
fragaria_vesca FvH4_1g26890
malus_domestica MD09G1285800.v1.1
prunus_persica Prupe.3G007600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487141
rosa_laevigata RLG00000023027
rosa_roxburghii Rroxscaffold_6G00395110
rosa_rugosa Rorug03G0231600
rosa_samantha Rh3BG315700 Rh3CG314000 Rh3DG311000
rosa_wichuraiana Rw3G024780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 721
AccI GTMKAC 2 cut(s) 557, 971
AccII CGCG 2 cut(s) 714, 1052
AciI CCGC 6 cut(s) 312, 350, 714, 719, 1050, 1235
AclI AACGTT 1 cut(s) 605
AclWI GGATC 5 cut(s) 120, 175, 820, 1107, 1120
AcoI YGGCCR 2 cut(s) 594, 1263
AcsI RAATTY 1 cut(s) 1315
AfaI GTAC 2 cut(s) 103, 1326
AfiI CCNNNNNNNGG 2 cut(s) 128, 302
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 6 cut(s) 965, 980, 1066, 1138, 1242, 1307
AluBI AGCT 6 cut(s) 239, 245, 254, 739, 798, 1210
AluI AGCT 6 cut(s) 239, 245, 254, 739, 798, 1210
Alw26I GTCTC 2 cut(s) 740, 1040
AlwI GGATC 5 cut(s) 120, 175, 820, 1107, 1120
Ama87I CYCGRG 2 cut(s) 823, 1040
AoxI GGCC 2 cut(s) 594, 1263
ApeKI GCWGC 1 cut(s) 1151
ApoI RAATTY 1 cut(s) 1315
AseI ATTAAT 1 cut(s) 92
AspS9I GGNCC 1 cut(s) 716
AsuC2I CCSGG 3 cut(s) 347, 452, 1215
AsuHPI GGTGA 5 cut(s) 166, 326, 859, 872, 928
AvaI CYCGRG 2 cut(s) 823, 1040
AvaII GGWCC 1 cut(s) 716
BalI TGGCCA 2 cut(s) 596, 1265
BamHI GGATCC 1 cut(s) 1112
BanII GRGCYC 1 cut(s) 591
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 1138
BccI CCATC 3 cut(s) 851, 986, 1037
BcgI CGANNNNNNTGC 4 cut(s) 780, 814, 865, 899
BclI TGATCA 2 cut(s) 427, 1008
BcnI CCSGG 3 cut(s) 347, 452, 1215
BcoDI GTCTC 2 cut(s) 740, 1040
BfaI CTAG 2 cut(s) 795, 983
BfmI CTRYAG 2 cut(s) 240, 255
BisI GCNGC 1 cut(s) 1152
BlsI GCNGC 1 cut(s) 1153
Bme1390I CCNGG 3 cut(s) 347, 452, 1215
Bme18I GGWCC 1 cut(s) 716
BmeT110I CYCGRG 2 cut(s) 823, 1040
BmgT120I GGNCC 1 cut(s) 716
BmiI GGNNCC 2 cut(s) 997, 1114
BmrFI CCNGG 3 cut(s) 347, 452, 1215
BmsI GCATC 5 cut(s) 473, 529, 800, 942, 1138
BpiI GAAGAC 1 cut(s) 137
BpuEI CTTGAG 3 cut(s) 669, 941, 1358
BpuMI CCSGG 3 cut(s) 347, 452, 1215
BsaAI YACGTR 1 cut(s) 1035
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 5 cut(s) 208, 597, 822, 1116, 1266
BsaWI WCCGGW 4 cut(s) 128, 161, 377, 998
BsaXI ACNNNNNCTCC 2 cut(s) 1037, 1067
Bsc4I CCNNNNNNNGG 2 cut(s) 128, 302
Bse118I RCCGGY 1 cut(s) 1247
Bse1I ACTGG 1 cut(s) 1097
Bse3DI GCAATG 1 cut(s) 506
BseDI CCNNGG 5 cut(s) 208, 597, 822, 1116, 1266
BseGI GGATG 3 cut(s) 488, 1092, 1290
BseLI CCNNNNNNNGG 2 cut(s) 128, 302
BseMI GCAATG 1 cut(s) 506
BseMII CTCAG 2 cut(s) 749, 1032
BseNI ACTGG 1 cut(s) 1097
BseRI GAGGAG 2 cut(s) 1058, 1085
BseXI GCAGC 1 cut(s) 1138
Bsh1236I CGCG 2 cut(s) 714, 1052
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 2 cut(s) 596, 1265
BsiEI CGRYCG 1 cut(s) 100
BsiHKCI CYCGRG 2 cut(s) 823, 1040
BsiSI CCGG 8 cut(s) 129, 162, 347, 378, 452, 999, 1215, 1248
BslFI GGGAC 1 cut(s) 1134
BslI CCNNNNNNNGG 2 cut(s) 128, 302
BsmAI GTCTC 2 cut(s) 740, 1040
BsmFI GGGAC 1 cut(s) 1134
BsnI GGCC 2 cut(s) 596, 1265
Bso31I GGTCTC 1 cut(s) 1040
BsoBI CYCGRG 2 cut(s) 823, 1040
Bsp1286I GDGCHC 1 cut(s) 591
Bsp19I CCATGG 1 cut(s) 1266
BspACI CCGC 6 cut(s) 312, 350, 714, 719, 1050, 1235
BspANI GGCC 2 cut(s) 596, 1265
BspCNI CTCAG 2 cut(s) 748, 1031
BspFNI CGCG 2 cut(s) 714, 1052
BspHI TCATGA 1 cut(s) 1330
BspLI GGNNCC 2 cut(s) 997, 1114
BspPI GGATC 5 cut(s) 120, 175, 820, 1107, 1120
BspQI GCTCTTC 1 cut(s) 493
BspTNI GGTCTC 1 cut(s) 1040
BsrBI CCGCTC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 506
BsrFI RCCGGY 1 cut(s) 1247
BsrI ACTGG 1 cut(s) 1097
BssAI RCCGGY 1 cut(s) 1247
BssECI CCNNGG 5 cut(s) 208, 597, 822, 1116, 1266
BssNAI GTATAC 1 cut(s) 558
BssT1I CCWWGG 1 cut(s) 1266
Bst1107I GTATAC 1 cut(s) 558
Bst4CI ACNGT 5 cut(s) 101, 209, 524, 940, 1351
Bst6I CTCTTC 2 cut(s) 111, 493
BstAPI GCANNNNNTGC 1 cut(s) 411
BstBAI YACGTR 1 cut(s) 1035
BstC8I GCNNGC 1 cut(s) 407
BstDEI CTNAG 5 cut(s) 264, 735, 750, 1018, 1173
BstDSI CCRYGG 4 cut(s) 208, 597, 1116, 1266
BstF5I GGATG 3 cut(s) 488, 1092, 1290
BstFNI CGCG 2 cut(s) 714, 1052
BstMAI GTCTC 2 cut(s) 740, 1040
BstMCI CGRYCG 1 cut(s) 100
BstMWI GCNNNNNNNGC 2 cut(s) 251, 411
BstNSI RCATGY 1 cut(s) 155
BstSCI CCNGG 3 cut(s) 345, 450, 1213
BstSFI CTRYAG 2 cut(s) 240, 255
BstUI CGCG 2 cut(s) 714, 1052
BstV1I GCAGC 1 cut(s) 1138
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 4 cut(s) 125, 180, 812, 1112
BstYI RGATCY 4 cut(s) 125, 180, 812, 1112
BstZ17I GTATAC 1 cut(s) 558
BsuRI GGCC 2 cut(s) 596, 1265
BtgI CCRYGG 4 cut(s) 208, 597, 1116, 1266
BtsCI GGATG 3 cut(s) 488, 1092, 1290
BtsIMutI CAGTG 2 cut(s) 414, 1365
Cac8I GCNNGC 1 cut(s) 407
CciI TCATGA 1 cut(s) 1330
Cfr10I RCCGGY 1 cut(s) 1247
Cfr13I GGNCC 1 cut(s) 716
CpoI CGGWCCG 1 cut(s) 716
Csp6I GTAC 2 cut(s) 102, 1325
CspCI CAANNNNNGTGG 2 cut(s) 1105, 1140
CspI CGGWCCG 1 cut(s) 716
CviAII CATG 6 cut(s) 57, 152, 302, 1228, 1267, 1331
CviQI GTAC 2 cut(s) 102, 1325
DdeI CTNAG 5 cut(s) 264, 735, 750, 1018, 1173
DraI TTTAAA 2 cut(s) 1057, 1192
EaeI YGGCCR 2 cut(s) 594, 1263
Eam1104I CTCTTC 2 cut(s) 111, 493
EarI CTCTTC 2 cut(s) 111, 493
EciI GGCGGA 1 cut(s) 1250
Eco130I CCWWGG 1 cut(s) 1266
Eco24I GRGCYC 1 cut(s) 591
Eco31I GGTCTC 1 cut(s) 1040
Eco47I GGWCC 1 cut(s) 716
Eco88I CYCGRG 2 cut(s) 823, 1040
EcoT14I CCWWGG 1 cut(s) 1266
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 1266
FaeI CATG 6 cut(s) 60, 155, 305, 1231, 1270, 1334
FaqI GGGAC 1 cut(s) 1134
FatI CATG 6 cut(s) 56, 151, 301, 1227, 1266, 1330
FbaI TGATCA 2 cut(s) 427, 1008
FblI GTMKAC 2 cut(s) 557, 971
Fnu4HI GCNGC 1 cut(s) 1152
FokI GGATG 3 cut(s) 495, 1099, 1297
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 1 cut(s) 1152
FspBI CTAG 2 cut(s) 795, 983
GluI GCNGC 1 cut(s) 1152
HaeIII GGCC 2 cut(s) 596, 1265
HapII CCGG 8 cut(s) 129, 162, 347, 378, 452, 999, 1215, 1248
Hin1II CATG 6 cut(s) 60, 155, 305, 1231, 1270, 1334
HincII GTYRAC 1 cut(s) 835
HindII GTYRAC 1 cut(s) 835
HinfI GANTC 8 cut(s) 142, 158, 190, 213, 397, 1016, 1106, 1238
HpaII CCGG 8 cut(s) 129, 162, 347, 378, 452, 999, 1215, 1248
HphI GGTGA 5 cut(s) 166, 326, 859, 872, 928
Hpy166II GTNNAC 6 cut(s) 558, 609, 835, 972, 1077, 1094
Hpy188I TCNGA 6 cut(s) 111, 123, 195, 441, 1086, 1298
Hpy188III TCNNGA 6 cut(s) 81, 896, 1040, 1110, 1331, 1337
Hpy8I GTNNAC 6 cut(s) 558, 609, 835, 972, 1077, 1094
Hpy99I CGWCG 1 cut(s) 677
HpyAV CCTTC 3 cut(s) 128, 662, 915
HpyCH4III ACNGT 5 cut(s) 101, 209, 524, 940, 1351
HpyCH4IV ACGT 2 cut(s) 605, 1034
HpyCH4V TGCA 3 cut(s) 405, 414, 848
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 411
HpyF3I CTNAG 5 cut(s) 264, 735, 750, 1018, 1173
HpySE526I ACGT 2 cut(s) 605, 1034
Hsp92II CATG 6 cut(s) 60, 155, 305, 1231, 1270, 1334
Ksp22I TGATCA 2 cut(s) 427, 1008
LguI GCTCTTC 1 cut(s) 493
LmnI GCTCC 3 cut(s) 236, 944, 1207
Lsp1109I GCAGC 1 cut(s) 1138
LweI GCATC 5 cut(s) 473, 529, 800, 942, 1138
MaeI CTAG 2 cut(s) 795, 983
MaeII ACGT 2 cut(s) 605, 1034
MaeIII GTNAC 6 cut(s) 383, 500, 524, 865, 924, 1140
MbiI CCGCTC 1 cut(s) 721
MflI RGATCY 4 cut(s) 125, 180, 812, 1112
MhlI GDGCHC 1 cut(s) 591
MlsI TGGCCA 2 cut(s) 596, 1265
MluCI AATT 2 cut(s) 1315, 1379
MluNI TGGCCA 2 cut(s) 596, 1265
MlyI GAGTC 4 cut(s) 151, 391, 1010, 1100
MmeI TCCRAC 1 cut(s) 922
Mox20I TGGCCA 2 cut(s) 596, 1265
MscI TGGCCA 2 cut(s) 596, 1265
MseI TTAA 9 cut(s) 62, 92, 204, 224, 288, 354, 1056, 1191, 1320
Msp20I TGGCCA 2 cut(s) 596, 1265
MspI CCGG 8 cut(s) 129, 162, 347, 378, 452, 999, 1215, 1248
MspR9I CCNGG 3 cut(s) 347, 452, 1215
MvnI CGCG 2 cut(s) 714, 1052
MwoI GCNNNNNNNGC 2 cut(s) 251, 411
NciI CCSGG 3 cut(s) 347, 452, 1215
NcoI CCATGG 1 cut(s) 1266
NlaIII CATG 6 cut(s) 60, 155, 305, 1231, 1270, 1334
NlaIV GGNNCC 2 cut(s) 997, 1114
NmuCI GTSAC 2 cut(s) 383, 865
NspI RCATGY 1 cut(s) 155
PaeR7I CTCGAG 1 cut(s) 1040
PagI TCATGA 1 cut(s) 1330
PciI ACATGT 1 cut(s) 151
PciSI GCTCTTC 1 cut(s) 493
PcsI WCGNNNNNNNCGW 2 cut(s) 74, 1031
PfeI GAWTC 4 cut(s) 158, 190, 213, 1238
PfoI TCCNGGA 1 cut(s) 1213
PkrI GCNGC 1 cut(s) 1153
PleI GAGTC 4 cut(s) 150, 391, 1010, 1100
PpsI GAGTC 4 cut(s) 150, 391, 1010, 1100
Ppu21I YACGTR 1 cut(s) 1035
PscI ACATGT 1 cut(s) 151
PshBI ATTAAT 1 cut(s) 92
Psp1406I AACGTT 1 cut(s) 605
PspN4I GGNNCC 2 cut(s) 997, 1114
PspPI GGNCC 1 cut(s) 716
PsuI RGATCY 4 cut(s) 125, 180, 812, 1112
RsaI GTAC 2 cut(s) 103, 1326
RsaNI GTAC 2 cut(s) 102, 1325
Rsr2I CGGWCCG 1 cut(s) 716
RsrII CGGWCCG 1 cut(s) 716
SapI GCTCTTC 1 cut(s) 493
SaqAI TTAA 9 cut(s) 62, 92, 204, 224, 288, 354, 1056, 1191, 1320
SatI GCNGC 1 cut(s) 1152
Sau96I GGNCC 1 cut(s) 716
SchI GAGTC 4 cut(s) 151, 391, 1010, 1100
ScrFI CCNGG 3 cut(s) 347, 452, 1215
SduI GDGCHC 1 cut(s) 591
SfaNI GCATC 5 cut(s) 473, 529, 800, 942, 1138
SfcI CTRYAG 2 cut(s) 240, 255
Sfr274I CTCGAG 1 cut(s) 1040
SgrAI CRCCGGYG 1 cut(s) 1247
SinI GGWCC 1 cut(s) 716
SlaI CTCGAG 1 cut(s) 1040
SmlI CTYRAG 4 cut(s) 684, 920, 1040, 1337
SmoI CTYRAG 4 cut(s) 684, 920, 1040, 1337
Sse9I AATT 2 cut(s) 1315, 1379
SsiI CCGC 6 cut(s) 312, 350, 714, 719, 1050, 1235
SspI AATATT 1 cut(s) 1162
SspMI CTAG 2 cut(s) 795, 983
StyD4I CCNGG 3 cut(s) 345, 450, 1213
StyI CCWWGG 1 cut(s) 1266
TaaI ACNGT 5 cut(s) 101, 209, 524, 940, 1351
TaiI ACGT 2 cut(s) 608, 1037
TaqI TCGA 9 cut(s) 96, 136, 148, 473, 514, 615, 629, 773, 1041
TasI AATT 2 cut(s) 1315, 1379
TatI WGTACW 1 cut(s) 1324
TfiI GAWTC 4 cut(s) 158, 190, 213, 1238
Tru1I TTAA 9 cut(s) 62, 92, 204, 224, 288, 354, 1056, 1191, 1320
Tru9I TTAA 9 cut(s) 62, 92, 204, 224, 288, 354, 1056, 1191, 1320
TscAI CASTG 2 cut(s) 421, 1372
TseFI GTSAC 2 cut(s) 383, 865
TseI GCWGC 1 cut(s) 1151
Tsp45I GTSAC 2 cut(s) 383, 865
TspDTI ATGAA 4 cut(s) 45, 63, 1175, 1319
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 2 cut(s) 421, 1372
VpaK11BI GGWCC 1 cut(s) 716
VspI ATTAAT 1 cut(s) 92
XapI RAATTY 1 cut(s) 1315
XceI RCATGY 1 cut(s) 155
XhoI CTCGAG 1 cut(s) 1040
XmiI GTMKAC 2 cut(s) 557, 971
XspI CTAG 2 cut(s) 795, 983
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.