FvH4_1g26890

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0017473
Physical Location & Seq
Forward (+)
18709029 .. 18710976
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26890.t1

Sequence Viewer

Length: 1383 bp
ATGGCTTCTTCAGTGATTCTTTCAAGGTCCAGTTTCGTATTAATAATACTGGGAGTACTAGGTGCACTGTTTGTTAACCCTTCGTGTTCCACTTCAAGACGAGCCCTTGATCTCCACGACCACAGCTTACAGATGCAAAGTGGGTTCAAGGTGACTCTAAAACACGTGGATTCTGGAAAGAACCTGACCAAACTCGAACGTCTTCAACGCCGAATCAAGCGAGGACGAAAGAGGCTGCAGAGGCTAAATGCAATGAAGCTCAAGAGCTCTACATCACCAGATAGTCATACCCGAGTTCAAACTCCGGTTCATGCAGGCGTGGGAGAGTTTTTGATGACGTTATCGATTGGTACTCCGGCAAAGAGCTTCTCAGCAATTGTGGACACAGGGAGCGATCTTATATGGACTCAGTGCGAGCCTTGCAAGCAGTGTTATAAGCAGCCCACCCCGATTTTCAACCCGAAAAAGTCTTCATCTTTCTCAAAGGTGTCATGTACAAGCGACCTATGTGATGCACTGCCCTCCTCGAAATGCAGTAACCAAAGCTGCGAGTATTACTACACTTATGGCGATTCTTCATCAACTGAGGGGATCCTCGCAACCGAAACGTTCTCTTTCGGAGATGTTTCTATTCCGAAAGTTAGTTTTGGATGTGGGGAAGACAACGAGGGTGGTGGGTTCAGCCAAGGTGCGGGGCTCGTAGGGTTTGGGCGGGGAACCTTGTCGTTGGTTTCGCAGCTCAAGGAGCCTAAGTTCTCCTATTGCCTTACATCCGTGGACGACACACAAAGTACGAGCACACTTTTGATGGGGTCAGTAGCAAGCTTGAACAGCACTACACCATCATCTGAGGTTGCAAACATCAAAACCACCCCTTTGATCAAGAACCCATCACAGCCTACTTTTTACTATCTTTCCCTCGAAGGAATCACTGTAGGAGGCACTAGCTTGCCTATTGAAAAAGACACATTCGCACTAGGAGATGATGGTGGCGGTGGCCTAATCATAGACTCTGGGACAACCCTTACTTACCTTGCACAGGATGCTTACGATGCTGTTGTGAAAGAATTCTCTTCCCAGATGGAACTTCCGGAGAAGGATGCGATTGACACGGTAGGGCTAGACCTGTGCTTCGAATTGCCAGAGGATGCTACCAAGGTAGAGGTGCCCAAGCTGGTATTTAATTTCAAGGGTGCTGATTTAGAACTGCCCAGTGAGAATTATATGATTGCAGATACGGATGTGGGAGTCATTTGCTTGGCTGTTGGGAGCGCTGGCGATATGTCTGTGTTTGGGAATTATCAGCAGCAGAATATGCTGGTTCTCCATGATATAGTCAAGGAGACGATCTCGTTTGTTCCCACAAAATGCGACCAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04138 map04138
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

461

Amino Acids

49.48

Weight (kDa)

5.22

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 110 - 272 2.4e-51 Xylanase inhibitor N-terminal
Asp PF00026 110 - 453 5.4e-22 Eukaryotic aspartyl protease
TAXi_C PF14541 303 - 453 1.5e-33 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017473)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G03200
fragaria_vesca FvH4_1g26890
malus_domestica MD09G1285800.v1.1
prunus_persica Prupe.3G007600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487141
rosa_laevigata RLG00000023027
rosa_roxburghii Rroxscaffold_6G00395110
rosa_rugosa Rorug03G0231600
rosa_samantha Rh3BG315700 Rh3CG314000 Rh3DG311000
rosa_wichuraiana Rw3G024780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 1165
AccIII TCCGGA 1 cut(s) 1090
AciI CCGC 3 cut(s) 692, 712, 993
AclI AACGTT 1 cut(s) 608
AclWI GGATC 2 cut(s) 586, 599
AcsI RAATTY 1 cut(s) 1067
AcvI CACGTG 1 cut(s) 166
AfaI GTAC 4 cut(s) 57, 352, 496, 793
AfeI AGCGCT 1 cut(s) 1273
AfiI CCNNNNNNNGG 2 cut(s) 691, 1039
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 9 cut(s) 24, 96, 148, 206, 299, 457, 829, 959, 1189
AloI GAACNNNNNNTCC 2 cut(s) 737, 769
AluBI AGCT 9 cut(s) 126, 259, 267, 366, 546, 739, 825, 948, 1174
AluI AGCT 9 cut(s) 126, 259, 267, 366, 546, 739, 825, 948, 1174
Alw21I GWGCWC 3 cut(s) 67, 269, 800
Alw26I GTCTC 1 cut(s) 1337
Alw44I GTGCAC 1 cut(s) 63
AlwI GGATC 2 cut(s) 586, 599
Ama87I CYCGRG 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 1090
Aor51HI AGCGCT 1 cut(s) 1273
AoxI GGCC 1 cut(s) 997
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 5 cut(s) 235, 439, 546, 736, 1306
ApoI RAATTY 1 cut(s) 1067
ArsI GACNNNNNNTTYG 2 cut(s) 1115, 1147
AseI ATTAAT 1 cut(s) 41
Asp700I GAANNNNTTC 2 cut(s) 201, 1067
AspLEI GCGC 1 cut(s) 1274
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 2 cut(s) 163, 267
AsuII TTCGAA 1 cut(s) 1134
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 27
BaeGI GKGCMC 2 cut(s) 67, 1170
BaeI ACNNNNGTAYC 2 cut(s) 1227, 1260
BamHI GGATCC 1 cut(s) 591
BanI GGYRCC 1 cut(s) 1165
BanII GRGCYC 3 cut(s) 106, 269, 699
BbrPI CACGTG 1 cut(s) 166
BbsI GAAGAC 3 cut(s) 194, 462, 666
Bbv12I GWGCWC 3 cut(s) 67, 269, 800
BbvI GCAGC 5 cut(s) 222, 451, 533, 748, 1318
BccI CCATC 5 cut(s) 802, 850, 898, 980, 1075
BclI TGATCA 1 cut(s) 879
BcoDI GTCTC 1 cut(s) 1337
BfaI CTAG 4 cut(s) 59, 945, 977, 1121
BfmI CTRYAG 2 cut(s) 236, 933
BfoI RGCGCY 1 cut(s) 1275
BisI GCNGC 5 cut(s) 236, 440, 547, 737, 1307
BlsI GCNGC 5 cut(s) 237, 441, 548, 738, 1308
BmcAI AGTACT 1 cut(s) 57
Bme18I GGWCC 1 cut(s) 27
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 27
BmiI GGNNCC 4 cut(s) 593, 718, 747, 1167
BmrI ACTGGG 2 cut(s) 59, 1206
BmsI GCATC 6 cut(s) 123, 502, 1033, 1042, 1090, 1138
BmuI ACTGGG 2 cut(s) 59, 1206
BpiI GAAGAC 3 cut(s) 194, 462, 666
BplI GAGNNNNNCTC 2 cut(s) 1334, 1366
Bpu14I TTCGAA 1 cut(s) 1134
BpuEI CTTGAG 2 cut(s) 245, 725
Bsa29I ATCGAT 1 cut(s) 344
BsaAI YACGTR 1 cut(s) 166
BsaJI CCNNGG 3 cut(s) 685, 774, 1155
BsaWI WCCGGW 2 cut(s) 304, 1090
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 2 cut(s) 691, 1039
Bse1I ACTGG 4 cut(s) 30, 54, 1212, 1375
Bse3DI GCAATG 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 1090
BseCI ATCGAT 1 cut(s) 344
BseDI CCNNGG 3 cut(s) 685, 774, 1155
BseGI GGATG 6 cut(s) 656, 770, 1048, 1105, 1153, 1246
BseLI CCNNNNNNNGG 2 cut(s) 691, 1039
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 4 cut(s) 384, 422, 576, 840
BseNI ACTGG 4 cut(s) 30, 54, 1212, 1375
BseRI GAGGAG 1 cut(s) 514
BseSI GKGCMC 2 cut(s) 67, 1170
BseXI GCAGC 5 cut(s) 222, 451, 533, 748, 1318
BshFI GGCC 1 cut(s) 999
BshNI GGYRCC 1 cut(s) 1165
BshVI ATCGAT 1 cut(s) 344
BsiHKAI GWGCWC 3 cut(s) 67, 269, 800
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 3 cut(s) 305, 356, 1091
BslFI GGGAC 1 cut(s) 1030
BslI CCNNNNNNNGG 2 cut(s) 691, 1039
BsmAI GTCTC 1 cut(s) 1337
BsmBI CGTCTC 1 cut(s) 1337
BsmFI GGGAC 1 cut(s) 1030
BsnI GGCC 1 cut(s) 999
BsoBI CYCGRG 1 cut(s) 291
Bsp119I TTCGAA 1 cut(s) 1134
Bsp1286I GDGCHC 6 cut(s) 67, 106, 269, 699, 800, 1170
Bsp13I TCCGGA 1 cut(s) 1090
Bsp1407I TGTACA 1 cut(s) 494
Bsp143I GATC 5 cut(s) 109, 394, 591, 879, 1347
BspACI CCGC 3 cut(s) 692, 712, 993
BspANI GGCC 1 cut(s) 999
BspCNI CTCAG 4 cut(s) 383, 421, 577, 841
BspDI ATCGAT 1 cut(s) 344
BspEI TCCGGA 1 cut(s) 1090
BspLI GGNNCC 4 cut(s) 593, 718, 747, 1167
BspMAI CTGCAG 1 cut(s) 240
BspPI GGATC 2 cut(s) 586, 599
BspT104I TTCGAA 1 cut(s) 1134
BspT107I GGYRCC 1 cut(s) 1165
BsrDI GCAATG 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 494
BsrI ACTGG 4 cut(s) 30, 54, 1212, 1375
BssECI CCNNGG 3 cut(s) 685, 774, 1155
BssMI GATC 5 cut(s) 109, 394, 591, 879, 1347
BssT1I CCWWGG 2 cut(s) 685, 1155
Bst4CI ACNGT 3 cut(s) 69, 934, 1114
Bst6I CTCTTC 1 cut(s) 1078
BstAPI GCANNNNNTGC 2 cut(s) 1043, 1315
BstAUI TGTACA 1 cut(s) 494
BstBAI YACGTR 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 1134
BstC8I GCNNGC 6 cut(s) 316, 416, 425, 823, 950, 1276
BstDEI CTNAG 5 cut(s) 370, 408, 585, 750, 849
BstDSI CCRYGG 1 cut(s) 774
BstENI CCTNNNNNAGG 1 cut(s) 1037
BstF5I GGATG 6 cut(s) 656, 770, 1048, 1105, 1153, 1246
BstH2I RGCGCY 1 cut(s) 1275
BstHHI GCGC 1 cut(s) 1274
BstKTI GATC 5 cut(s) 112, 397, 594, 882, 1350
BstMAI GTCTC 1 cut(s) 1337
BstMBI GATC 5 cut(s) 109, 394, 591, 879, 1347
BstMWI GCNNNNNNNGC 8 cut(s) 241, 420, 424, 745, 831, 1043, 1052, 1315
BstSFI CTRYAG 2 cut(s) 236, 933
BstSLI GKGCMC 2 cut(s) 67, 1170
BstV1I GCAGC 5 cut(s) 222, 451, 533, 748, 1318
BstV2I GAAGAC 3 cut(s) 194, 462, 666
BstX2I RGATCY 1 cut(s) 591
BstYI RGATCY 1 cut(s) 591
Bsu15I ATCGAT 1 cut(s) 344
BsuRI GGCC 1 cut(s) 999
BsuTUI ATCGAT 1 cut(s) 344
BtgI CCRYGG 1 cut(s) 774
BtsCI GGATG 6 cut(s) 656, 770, 1048, 1105, 1153, 1246
BtsI GCAGTG 2 cut(s) 434, 515
BtsIMutI CAGTG 7 cut(s) 18, 65, 416, 434, 515, 930, 1219
Cac8I GCNNGC 6 cut(s) 316, 416, 425, 823, 950, 1276
CfoI GCGC 1 cut(s) 1274
Cfr13I GGNCC 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 344
Csp6I GTAC 4 cut(s) 56, 351, 495, 792
CspCI CAANNNNNGTGG 2 cut(s) 652, 687
CviAII CATG 3 cut(s) 311, 492, 1328
CviQI GTAC 4 cut(s) 56, 351, 495, 792
DdeI CTNAG 5 cut(s) 370, 408, 585, 750, 849
DpnI GATC 5 cut(s) 111, 396, 593, 881, 1349
DpnII GATC 5 cut(s) 109, 394, 591, 879, 1347
Eam1104I CTCTTC 1 cut(s) 1078
EarI CTCTTC 1 cut(s) 1078
Ecl136II GAGCTC 1 cut(s) 267
Eco130I CCWWGG 2 cut(s) 685, 1155
Eco24I GRGCYC 3 cut(s) 106, 269, 699
Eco47I GGWCC 1 cut(s) 27
Eco47III AGCGCT 1 cut(s) 1273
Eco53kI GAGCTC 1 cut(s) 267
Eco72I CACGTG 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 267
EcoNI CCTNNNNNAGG 1 cut(s) 1037
EcoRI GAATTC 1 cut(s) 1067
EcoT14I CCWWGG 2 cut(s) 685, 1155
EcoT38I GRGCYC 3 cut(s) 106, 269, 699
ErhI CCWWGG 2 cut(s) 685, 1155
Esp3I CGTCTC 1 cut(s) 1337
FaeI CATG 3 cut(s) 314, 495, 1331
FaqI GGGAC 1 cut(s) 1030
FatI CATG 3 cut(s) 310, 491, 1327
FauI CCCGC 2 cut(s) 685, 705
FbaI TGATCA 1 cut(s) 879
Fnu4HI GCNGC 5 cut(s) 236, 440, 547, 737, 1307
FokI GGATG 6 cut(s) 663, 757, 1055, 1112, 1160, 1253
FriOI GRGCYC 3 cut(s) 106, 269, 699
Fsp4HI GCNGC 5 cut(s) 236, 440, 547, 737, 1307
FspBI CTAG 4 cut(s) 59, 945, 977, 1121
GlaI GCGC 1 cut(s) 1273
GluI GCNGC 5 cut(s) 236, 440, 547, 737, 1307
HaeII RGCGCY 1 cut(s) 1275
HaeIII GGCC 1 cut(s) 999
HapII CCGG 3 cut(s) 305, 356, 1091
HhaI GCGC 1 cut(s) 1274
Hin1II CATG 3 cut(s) 314, 495, 1331
Hin6I GCGC 1 cut(s) 1272
HinP1I GCGC 1 cut(s) 1272
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 9 cut(s) 16, 154, 170, 213, 406, 572, 927, 1010, 1248
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 3 cut(s) 305, 356, 1091
HphI GGTGA 2 cut(s) 163, 267
Hpy166II GTNNAC 4 cut(s) 65, 76, 382, 778
Hpy188I TCNGA 3 cut(s) 620, 636, 850
Hpy188III TCNNGA 5 cut(s) 96, 174, 262, 883, 1091
Hpy8I GTNNAC 4 cut(s) 65, 76, 382, 778
HpyAV CCTTC 3 cut(s) 90, 917, 1090
HpyCH4III ACNGT 3 cut(s) 69, 934, 1114
HpyCH4IV ACGT 4 cut(s) 165, 199, 338, 608
HpyF10VI GCNNNNNNNGC 8 cut(s) 241, 420, 424, 745, 831, 1043, 1052, 1315
HpyF3I CTNAG 5 cut(s) 370, 408, 585, 750, 849
HpySE526I ACGT 4 cut(s) 165, 199, 338, 608
Hsp92II CATG 3 cut(s) 314, 495, 1331
HspAI GCGC 1 cut(s) 1272
Kpn2I TCCGGA 1 cut(s) 1090
Ksp22I TGATCA 1 cut(s) 879
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 5 cut(s) 109, 394, 591, 879, 1347
LmnI GCTCC 3 cut(s) 390, 745, 1269
Lsp1109I GCAGC 5 cut(s) 222, 451, 533, 748, 1318
LweI GCATC 6 cut(s) 123, 502, 1033, 1042, 1090, 1138
MaeI CTAG 4 cut(s) 59, 945, 977, 1121
MaeII ACGT 4 cut(s) 165, 199, 338, 608
MaeIII GTNAC 2 cut(s) 151, 536
MalI GATC 5 cut(s) 111, 396, 593, 881, 1349
MboI GATC 5 cut(s) 109, 394, 591, 879, 1347
MboII GAAGA 5 cut(s) 194, 462, 567, 671, 1065
MfeI CAATTG 1 cut(s) 375
MflI RGATCY 1 cut(s) 591
MhlI GDGCHC 6 cut(s) 67, 106, 269, 699, 800, 1170
MluCI AATT 6 cut(s) 375, 1067, 1136, 1183, 1219, 1297
MlyI GAGTC 4 cut(s) 148, 400, 1004, 1257
MroI TCCGGA 1 cut(s) 1090
MroXI GAANNNNTTC 2 cut(s) 201, 1067
MseI TTAA 3 cut(s) 41, 75, 1182
MspI CCGG 3 cut(s) 305, 356, 1091
MunI CAATTG 1 cut(s) 375
MwoI GCNNNNNNNGC 8 cut(s) 241, 420, 424, 745, 831, 1043, 1052, 1315
NdeII GATC 5 cut(s) 109, 394, 591, 879, 1347
NlaIII CATG 3 cut(s) 314, 495, 1331
NlaIV GGNNCC 4 cut(s) 593, 718, 747, 1167
NmuCI GTSAC 1 cut(s) 151
NspV TTCGAA 1 cut(s) 1134
PdmI GAANNNNTTC 2 cut(s) 201, 1067
PfeI GAWTC 5 cut(s) 16, 170, 213, 572, 927
PkrI GCNGC 5 cut(s) 237, 441, 548, 738, 1308
PleI GAGTC 4 cut(s) 148, 400, 1004, 1256
PmaCI CACGTG 1 cut(s) 166
PmlI CACGTG 1 cut(s) 166
PpsI GAGTC 4 cut(s) 148, 400, 1004, 1256
Ppu21I YACGTR 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 41
PsiI TTATAA 1 cut(s) 435
Psp124BI GAGCTC 1 cut(s) 269
Psp1406I AACGTT 1 cut(s) 608
PspCI CACGTG 1 cut(s) 166
PspN4I GGNNCC 4 cut(s) 593, 718, 747, 1167
PspPI GGNCC 1 cut(s) 27
PstI CTGCAG 1 cut(s) 240
PsuI RGATCY 1 cut(s) 591
RsaI GTAC 4 cut(s) 57, 352, 496, 793
RsaNI GTAC 4 cut(s) 56, 351, 495, 792
SacI GAGCTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 41, 75, 1182
SatI GCNGC 5 cut(s) 236, 440, 547, 737, 1307
Sau3AI GATC 5 cut(s) 109, 394, 591, 879, 1347
Sau96I GGNCC 1 cut(s) 27
ScaI AGTACT 1 cut(s) 57
SchI GAGTC 4 cut(s) 148, 400, 1004, 1257
SduI GDGCHC 6 cut(s) 67, 106, 269, 699, 800, 1170
SfaNI GCATC 6 cut(s) 123, 502, 1033, 1042, 1090, 1138
SfcI CTRYAG 2 cut(s) 236, 933
SfuI TTCGAA 1 cut(s) 1134
SinI GGWCC 1 cut(s) 27
SmlI CTYRAG 2 cut(s) 260, 740
SmoI CTYRAG 2 cut(s) 260, 740
Sse9I AATT 6 cut(s) 375, 1067, 1136, 1183, 1219, 1297
SsiI CCGC 3 cut(s) 692, 712, 993
SspMI CTAG 4 cut(s) 59, 945, 977, 1121
SstI GAGCTC 1 cut(s) 269
StyI CCWWGG 2 cut(s) 685, 1155
TaaI ACNGT 3 cut(s) 69, 934, 1114
TaiI ACGT 4 cut(s) 168, 202, 341, 611
TaqI TCGA 5 cut(s) 195, 344, 527, 921, 1134
TasI AATT 6 cut(s) 375, 1067, 1136, 1183, 1219, 1297
TatI WGTACW 2 cut(s) 55, 494
TfiI GAWTC 5 cut(s) 16, 170, 213, 572, 927
Tru1I TTAA 3 cut(s) 41, 75, 1182
Tru9I TTAA 3 cut(s) 41, 75, 1182
TscAI CASTG 7 cut(s) 18, 72, 416, 434, 522, 937, 1219
TseFI GTSAC 1 cut(s) 151
TseI GCWGC 5 cut(s) 235, 439, 546, 736, 1306
Tsp45I GTSAC 1 cut(s) 151
TspDTI ATGAA 4 cut(s) 269, 299, 462, 567
TspGWI ACGGA 2 cut(s) 763, 1253
TspRI CASTG 7 cut(s) 18, 72, 416, 434, 522, 937, 1219
VneI GTGCAC 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 27
VspI ATTAAT 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 1037
XapI RAATTY 1 cut(s) 1067
XmnI GAANNNNTTC 2 cut(s) 201, 1067
XspI CTAG 4 cut(s) 59, 945, 977, 1121
ZrmI AGTACT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.