AT2G06555

No apical meristem-associated C-terminal domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
2604148 .. 2604927
780 bp
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UTR
Exon/CDS
Intron
AT2G06555.2

Sequence Viewer

Length: 480 bp
ATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTGCTTGCCTACAAGCTTTACCATCAAGATCAAAAAAACAAATTCATCCTTGAGCATGTTTGGAGAATCCTCAAGACTGATCAAAGTTTCTGCCAAGAAGAAAGCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAAGGCAGCCAAGGCTTCAGCCAAGTCAAAAGAGAAGGATTTGACTGTCAAAGAGAGACTCTCCAAACATAAGCTACTTGACAGCCTACTTAATAGGTCTAATGGATTGAGTGATATGGAAATTCAAATTAAAAATTCTCTTATCCAAGAGTATCTTTCTGGAAGCAATGTGTTTGTTTCTGAGAATGAATATTCTGACTTCCTCTTGGAAGCTAGTGATGTCGGCAAGGAAAGGAGATGTGGGGTATTGATGCTTGAATGTAGGGTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

159

Amino Acids

17.59

Weight (kDa)

9.56

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019163)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 94, 327, 340
AcuI CTGAAG 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 332, 464
AluBI AGCT 4 cut(s) 69, 158, 280, 419
AluI AGCT 4 cut(s) 69, 158, 280, 419
Alw26I GTCTC 2 cut(s) 28, 256
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 3 cut(s) 94, 327, 340
BauI CACGAG 1 cut(s) 52
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 83
BclI TGATCA 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 28, 256
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 2 cut(s) 171, 198
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
BmsI GCATC 1 cut(s) 447
BplI GAGNNNNNCTC 2 cut(s) 251, 283
BpuEI CTTGAG 2 cut(s) 109, 124
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse3DI GCAATG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 378
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 224
BshFI GGCC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 2 cut(s) 28, 256
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 2 cut(s) 81, 132
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 379
BsrDI GCAATG 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 81, 132
BssSI CACGAG 1 cut(s) 52
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 2 cut(s) 84, 135
BstMAI GTCTC 2 cut(s) 28, 256
BstMBI GATC 2 cut(s) 81, 132
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstNSI RCATGY 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 171, 198
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 1 cut(s) 98
Cac8I GCNNGC 1 cut(s) 59
CviAII CATG 1 cut(s) 109
CviJI RGCY 9 cut(s) 69, 158, 196, 215, 221, 227, 280, 291, 419
CviKI_1 RGCY 9 cut(s) 69, 158, 196, 215, 221, 227, 280, 291, 419
DdeI CTNAG 1 cut(s) 387
DpnI GATC 2 cut(s) 83, 134
DpnII GATC 2 cut(s) 81, 132
Eco130I CCWWGG 1 cut(s) 216
Eco147I AGGCCT 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 1 cut(s) 112
FaiI YATR 5 cut(s) 44, 110, 200, 276, 323
FalI AAGNNNNNCTT 6 cut(s) 147, 179, 171, 203, 345, 377
FatI CATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 132
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 213
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 4 cut(s) 18, 36, 119, 264
Hpy188I TCNGA 3 cut(s) 17, 388, 403
Hpy188III TCNNGA 3 cut(s) 79, 126, 366
HpyAV CCTTC 2 cut(s) 202, 235
HpyCH4III ACNGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 1 cut(s) 387
Hsp92II CATG 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 132
Kzo9I GATC 2 cut(s) 81, 132
LpnPI CCDG 3 cut(s) 12, 24, 351
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 447
MaeI CTAG 1 cut(s) 420
MalI GATC 2 cut(s) 83, 134
MboI GATC 2 cut(s) 81, 132
MboII GAAGA 1 cut(s) 163
MluCI AATT 4 cut(s) 94, 327, 333, 340
MlyI GAGTC 3 cut(s) 12, 30, 258
MnlI CCTC 3 cut(s) 32, 133, 419
MseI TTAA 3 cut(s) 189, 297, 336
MslI CAYNNNNRTG 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 2 cut(s) 81, 132
NlaIII CATG 1 cut(s) 112
NspI RCATGY 1 cut(s) 112
PceI AGGCCT 1 cut(s) 196
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 3 cut(s) 12, 30, 258
PpsI GAGTC 3 cut(s) 12, 30, 258
RseI CAYNNNNRTG 1 cut(s) 52
SaqAI TTAA 3 cut(s) 189, 297, 336
SatI GCNGC 1 cut(s) 213
Sau3AI GATC 2 cut(s) 81, 132
SchI GAGTC 3 cut(s) 12, 30, 258
SetI ASST 6 cut(s) 71, 160, 205, 282, 305, 421
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 2 cut(s) 171, 198
SmiMI CAYNNNNRTG 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 103, 124
SmoI CTYRAG 2 cut(s) 103, 124
Sse9I AATT 4 cut(s) 94, 327, 333, 340
SseBI AGGCCT 1 cut(s) 196
SspI AATATT 1 cut(s) 398
SspMI CTAG 1 cut(s) 420
StuI AGGCCT 1 cut(s) 196
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 253
TasI AATT 4 cut(s) 94, 327, 333, 340
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 189, 297, 336
Tru9I TTAA 3 cut(s) 189, 297, 336
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 87, 156, 408
XapI RAATTY 3 cut(s) 94, 327, 340
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.