AT5G52547

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0019163
Physical Location & Seq
Reverse (-)
21325837 .. 21327498
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G52547.3

Sequence Viewer

Length: 321 bp
ATGGATACTGGTGGGTTTGTAGATGAAGAAAGCGATGGATCTCAAGCTTCTGCACAGTCATCAAGCTCCCAGGCAGTTAGCCATTCAGATGAAGCAATGTCTCGTCCATCAGGTGTTAAGGCGGCAAAGGCCGCGAAAGCTAAAAGGACTCTGTCAGTGATTAAGAGCATGTGGGAGATTAAGCAGAAGGAATTTGAATTGAACGAGAAGCTTAGCAAGAAGACGTTGTTGGAGACTCTACTTCGAAAAACAGCGCCGCTTAGTGATCTTGAAATGGCTTTAAAGAACAAACTTATCACTGACATATTGTCAAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

106

Amino Acids

11.48

Weight (kDa)

7.95

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06555 AT2G06555 AT3G47680 AT4G08270 AT5G52547 AT5G52547 AT5G52547 AT5G52547

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 3 cut(s) 122, 132, 257
AclWI GGATC 1 cut(s) 46
AcsI RAATTY 1 cut(s) 191
AgsI TTSAA 3 cut(s) 197, 202, 272
AhdI GACNNNNNGTC 1 cut(s) 307
AjnI CCWGG 1 cut(s) 69
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 4 cut(s) 47, 66, 140, 211
AluI AGCT 4 cut(s) 47, 66, 140, 211
Alw26I GTCTC 2 cut(s) 105, 227
AlwI GGATC 1 cut(s) 46
AoxI GGCC 1 cut(s) 129
ApoI RAATTY 1 cut(s) 191
AspLEI GCGC 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 227
BccI CCATC 2 cut(s) 29, 115
BciT130I CCWGG 1 cut(s) 71
BcoDI GTCTC 2 cut(s) 105, 227
BfoI RGCGCY 1 cut(s) 257
BisI GCNGC 3 cut(s) 123, 132, 257
BlpI GCTNAGC 1 cut(s) 212
BlsI GCNGC 3 cut(s) 124, 133, 258
Bme1390I CCNGG 1 cut(s) 71
BmeRI GACNNNNNGTC 1 cut(s) 307
BmrFI CCNGG 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 227
Bpu1102I GCTNAGC 1 cut(s) 212
Bpu14I TTCGAA 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 69
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 36
Bsh1236I CGCG 1 cut(s) 134
BshFI GGCC 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 105, 227
BsnI GGCC 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 244
Bsp143I GATC 2 cut(s) 38, 265
Bsp1720I GCTNAGC 1 cut(s) 212
BspACI CCGC 3 cut(s) 122, 132, 257
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 1 cut(s) 46
BspT104I TTCGAA 1 cut(s) 244
BsrDI GCAATG 1 cut(s) 102
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 2 cut(s) 38, 265
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 57
BstBI TTCGAA 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 212, 260
BstFNI CGCG 1 cut(s) 134
BstH2I RGCGCY 1 cut(s) 257
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 2 cut(s) 41, 268
BstMAI GTCTC 2 cut(s) 105, 227
BstMBI GATC 2 cut(s) 38, 265
BstMWI GCNNNNNNNGC 3 cut(s) 128, 131, 137
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 69
BstUI CGCG 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 1 cut(s) 131
BtgZI GCGATG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 162, 297
CfoI GCGC 1 cut(s) 256
CviAII CATG 1 cut(s) 169
CviJI RGCY 7 cut(s) 47, 66, 81, 131, 140, 211, 278
CviKI_1 RGCY 7 cut(s) 47, 66, 81, 131, 140, 211, 278
DdeI CTNAG 2 cut(s) 212, 260
DpnI GATC 2 cut(s) 40, 267
DpnII GATC 2 cut(s) 38, 265
DraI TTTAAA 1 cut(s) 282
DriI GACNNNNNGTC 1 cut(s) 307
Eam1105I GACNNNNNGTC 1 cut(s) 307
EcoRII CCWGG 1 cut(s) 69
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 170, 305
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 123, 132, 257
Fsp4HI GCNGC 3 cut(s) 123, 132, 257
GlaI GCGC 1 cut(s) 255
GluI GCNGC 3 cut(s) 123, 132, 257
HaeII RGCGCY 1 cut(s) 257
HaeIII GGCC 1 cut(s) 131
HhaI GCGC 1 cut(s) 256
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HindIII AAGCTT 2 cut(s) 45, 209
HinfI GANTC 2 cut(s) 148, 235
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 131, 137
HpyF3I CTNAG 2 cut(s) 212, 260
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 2 cut(s) 38, 265
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 3 cut(s) 56, 83, 96
MaeII ACGT 1 cut(s) 224
MalI GATC 2 cut(s) 40, 267
MboI GATC 2 cut(s) 38, 265
MboII GAAGA 2 cut(s) 38, 232
MflI RGATCY 1 cut(s) 38
MluCI AATT 2 cut(s) 191, 197
MlyI GAGTC 2 cut(s) 142, 229
MmeI TCCRAC 1 cut(s) 210
MseI TTAA 4 cut(s) 117, 162, 180, 281
MslI CAYNNNNRTG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 3 cut(s) 128, 131, 137
NdeII GATC 2 cut(s) 38, 265
NlaIII CATG 1 cut(s) 172
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 1 cut(s) 244
PflFI GACNNNGTC 1 cut(s) 151
PkrI GCNGC 3 cut(s) 124, 133, 258
PleI GAGTC 2 cut(s) 142, 229
PpsI GAGTC 2 cut(s) 142, 229
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PsuI RGATCY 1 cut(s) 38
PsyI GACNNNGTC 1 cut(s) 151
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 4 cut(s) 117, 162, 180, 281
SatI GCNGC 3 cut(s) 123, 132, 257
Sau3AI GATC 2 cut(s) 38, 265
SchI GAGTC 2 cut(s) 142, 229
ScrFI CCNGG 1 cut(s) 71
SetI ASST 6 cut(s) 49, 68, 115, 142, 213, 227
SfuI TTCGAA 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 42
SmoI CTYRAG 1 cut(s) 42
Sse9I AATT 2 cut(s) 191, 197
SsiI CCGC 3 cut(s) 122, 132, 257
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 1 cut(s) 57
TaiI ACGT 1 cut(s) 227
TaqI TCGA 1 cut(s) 244
TasI AATT 2 cut(s) 191, 197
TauI GCSGC 3 cut(s) 125, 134, 259
Tru1I TTAA 4 cut(s) 117, 162, 180, 281
Tru9I TTAA 4 cut(s) 117, 162, 180, 281
TscAI CASTG 2 cut(s) 162, 304
TspDTI ATGAA 2 cut(s) 39, 105
TspRI CASTG 2 cut(s) 162, 304
Tth111I GACNNNGTC 1 cut(s) 151
XapI RAATTY 1 cut(s) 191
XceI RCATGY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.