AT3G47680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0019163
Physical Location & Seq
Reverse (-)
17577398 .. 17579577
2180 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G47680.1

Sequence Viewer

Length: 909 bp
ATGGATCCATATAGTCATGGATCAAGCTTCATGAACCTCTTAACTAGTCAACAAGAGGCTCACAATTTAGAAACCAATCCGTATGATGATGATGTTTCTCCAAACCAAGCTGCACACACACCTAAGGTGAAAAGAGAGAGAAGGAAATGGTCTGCCGGTGAAGACTTGGTGCTTGTCAGTGCTTGGCTCAACACAAGTAAAGATGCAGTAATAGGCAATGAACAAAAGGGTTATGCCTTTTGGTCACGTATTGCTGCCTATTACGGAGCAAGTCCAAAGCTCAACGGTGTGGAAAAGAGAGAGACAGGTCACATAAAGCAGAGGTGGACTAAGATCAATGAAGGTGTAGGCAAGTTTGTAGGGAGCTATGAAGCTGCAACAAAGCAGAAATCTAGTGGACAGAATGACGATGATGTCGTTGCATTAGCACATGAAATCTACAACAGCGAACATGGTAAGTTCACCCTTGAGCATGCTTGGAGAGTGCTTCGCTTTGAACAGAAATGGCTCTCTGCTCCTTCTACTAAAGCAACTGTAATGTCCAAAAGAAGAAAGTCTGACAAGGCTTCAACCTCCCAGCCACAAACCCATGAAGCAGAAGAAGCAATGTCTCGTCCTATTGGTGTTAAAGCTGCAAAGGCGAAAGCAAAAAAGGCTGTGAGTAAGACAACAACTGTGGAAGACAAAGGGAATGTGATGTTGGAGATTCAGTCTATTTGGGAGATAAAGCAGAAGGATTGGGAGCTAAGGCAGAAGGATCGAGAGCAAGAGAAGGAGGATTTTGAAAAGCAAGAAAGATTATCAAGGACCAAATTGCTGGAATCTCTCTTCACAAAAAAAGAGCCACTTACTGATATAGAAGTGGCTCTCAAGAACAAATTAATCAATGAGATGTTGTCAAACTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

302

Amino Acids

34.38

Weight (kDa)

9.13

Isoelectric Point (pI)

45.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019163)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G06555 AT2G06555 AT3G47680 AT4G08270 AT5G52547 AT5G52547 AT5G52547 AT5G52547

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 413
AclWI GGATC 3 cut(s) 12, 28, 765
AgsI TTSAA 3 cut(s) 497, 570, 785
AhlI ACTAGT 1 cut(s) 44
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AluBI AGCT 7 cut(s) 27, 110, 280, 366, 374, 632, 745
AluI AGCT 7 cut(s) 27, 110, 280, 366, 374, 632, 745
Alw26I GTCTC 2 cut(s) 296, 615
AlwI GGATC 3 cut(s) 12, 28, 765
ApeKI GCWGC 4 cut(s) 110, 254, 374, 632
AseI ATTAAT 1 cut(s) 881
AspS9I GGNCC 1 cut(s) 807
AsuHPI GGTGA 3 cut(s) 139, 170, 454
AvaII GGWCC 1 cut(s) 807
AxyI CCTNAGG 1 cut(s) 123
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 2 cut(s) 168, 687
BbvI GCAGC 4 cut(s) 97, 241, 361, 619
BcgI CGANNNNNNTGC 2 cut(s) 740, 774
BcoDI GTCTC 2 cut(s) 296, 615
BcuI ACTAGT 1 cut(s) 44
BfaI CTAG 2 cut(s) 45, 393
BisI GCNGC 4 cut(s) 111, 255, 375, 633
BlsI GCNGC 4 cut(s) 112, 256, 376, 634
Bme18I GGWCC 1 cut(s) 807
BmgT120I GGNCC 1 cut(s) 807
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 193
BpiI GAAGAC 2 cut(s) 168, 687
Bpu10I CCTNAGC 1 cut(s) 746
BpuEI CTTGAG 2 cut(s) 488, 854
BsaAI YACGTR 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 695, 725
Bse118I RCCGGY 1 cut(s) 155
Bse21I CCTNAGG 1 cut(s) 123
Bse3DI GCAATG 2 cut(s) 223, 612
BseMI GCAATG 2 cut(s) 223, 612
BseXI GCAGC 4 cut(s) 97, 241, 361, 619
BseYI CCCAGC 1 cut(s) 576
BsgI GTGCAG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 296, 615
Bsp143I GATC 4 cut(s) 4, 20, 333, 757
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 3 cut(s) 12, 28, 765
BsrDI GCAATG 2 cut(s) 223, 612
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssMI GATC 4 cut(s) 4, 20, 333, 757
Bst4CI ACNGT 3 cut(s) 287, 535, 676
Bst6I CTCTTC 1 cut(s) 833
BstBAI YACGTR 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 474
BstDEI CTNAG 3 cut(s) 123, 330, 746
BstKTI GATC 4 cut(s) 7, 23, 336, 760
BstMAI GTCTC 2 cut(s) 296, 615
BstMBI GATC 4 cut(s) 4, 20, 333, 757
BstMWI GCNNNNNNNGC 3 cut(s) 602, 638, 653
BstNSI RCATGY 1 cut(s) 476
BstV1I GCAGC 4 cut(s) 97, 241, 361, 619
BstV2I GAAGAC 2 cut(s) 168, 687
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 817
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 474
CciI TCATGA 1 cut(s) 30
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 807
CspCI CAANNNNNGTGG 2 cut(s) 657, 692
CviAII CATG 6 cut(s) 17, 31, 431, 452, 473, 590
DdeI CTNAG 3 cut(s) 123, 330, 746
DpnI GATC 4 cut(s) 6, 22, 335, 759
DpnII GATC 4 cut(s) 4, 20, 333, 757
DrdI GACNNNNNNGTC 1 cut(s) 413
DseDI GACNNNNNNGTC 1 cut(s) 413
Eam1104I CTCTTC 1 cut(s) 833
EarI CTCTTC 1 cut(s) 833
Eco47I GGWCC 1 cut(s) 807
Eco81I CCTNAGG 1 cut(s) 123
FaeI CATG 6 cut(s) 20, 34, 434, 455, 476, 593
FalI AAGNNNNNCTT 2 cut(s) 831, 863
FatI CATG 6 cut(s) 16, 30, 430, 451, 472, 589
Fnu4HI GCNGC 4 cut(s) 111, 255, 375, 633
Fsp4HI GCNGC 4 cut(s) 111, 255, 375, 633
FspBI CTAG 2 cut(s) 45, 393
GluI GCNGC 4 cut(s) 111, 255, 375, 633
GsaI CCCAGC 1 cut(s) 580
HapII CCGG 1 cut(s) 156
Hin1II CATG 6 cut(s) 20, 34, 434, 455, 476, 593
HincII GTYRAC 1 cut(s) 50
HindII GTYRAC 1 cut(s) 50
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 2 cut(s) 706, 821
HpaII CCGG 1 cut(s) 156
HphI GGTGA 3 cut(s) 139, 170, 454
Hpy166II GTNNAC 4 cut(s) 50, 327, 398, 462
Hpy188I TCNGA 1 cut(s) 559
Hpy188III TCNNGA 3 cut(s) 31, 761, 871
Hpy8I GTNNAC 4 cut(s) 50, 327, 398, 462
HpyAV CCTTC 6 cut(s) 135, 335, 528, 727, 748, 766
HpyCH4III ACNGT 3 cut(s) 287, 535, 676
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 5 cut(s) 113, 206, 377, 422, 635
HpyF10VI GCNNNNNNNGC 3 cut(s) 602, 638, 653
HpyF3I CTNAG 3 cut(s) 123, 330, 746
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 6 cut(s) 20, 34, 434, 455, 476, 593
Kzo9I GATC 4 cut(s) 4, 20, 333, 757
LmnI GCTCC 4 cut(s) 266, 363, 520, 742
LpnPI CCDG 4 cut(s) 169, 291, 590, 803
Lsp1109I GCAGC 4 cut(s) 97, 241, 361, 619
LweI GCATC 1 cut(s) 193
MaeI CTAG 2 cut(s) 45, 393
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 2 cut(s) 243, 308
MalI GATC 4 cut(s) 6, 22, 335, 759
MboI GATC 4 cut(s) 4, 20, 333, 757
MboII GAAGA 5 cut(s) 173, 561, 611, 692, 820
MflI RGATCY 1 cut(s) 4
MluCI AATT 3 cut(s) 64, 812, 878
MmeI TCCRAC 1 cut(s) 681
MnlI CCTC 5 cut(s) 47, 49, 315, 583, 769
MseI TTAA 3 cut(s) 41, 627, 881
MspI CCGG 1 cut(s) 156
MwoI GCNNNNNNNGC 3 cut(s) 602, 638, 653
NdeII GATC 4 cut(s) 4, 20, 333, 757
NlaIII CATG 6 cut(s) 20, 34, 434, 455, 476, 593
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 243, 308
NspI RCATGY 1 cut(s) 476
PaeI GCATGC 1 cut(s) 476
PagI TCATGA 1 cut(s) 30
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PfeI GAWTC 2 cut(s) 706, 821
PkrI GCNGC 4 cut(s) 112, 256, 376, 634
Ppu21I YACGTR 1 cut(s) 248
PshBI ATTAAT 1 cut(s) 881
PspFI CCCAGC 1 cut(s) 576
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 807
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 3 cut(s) 41, 627, 881
SatI GCNGC 4 cut(s) 111, 255, 375, 633
Sau3AI GATC 4 cut(s) 4, 20, 333, 757
Sau96I GGNCC 1 cut(s) 807
SfaNI GCATC 1 cut(s) 193
SinI GGWCC 1 cut(s) 807
SmlI CTYRAG 2 cut(s) 467, 869
SmoI CTYRAG 2 cut(s) 467, 869
SpeI ACTAGT 1 cut(s) 44
SphI GCATGC 1 cut(s) 476
Sse9I AATT 3 cut(s) 64, 812, 878
SspMI CTAG 2 cut(s) 45, 393
TaaI ACNGT 3 cut(s) 287, 535, 676
TaiI ACGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 760
TasI AATT 3 cut(s) 64, 812, 878
TfiI GAWTC 2 cut(s) 706, 821
Tru1I TTAA 3 cut(s) 41, 627, 881
Tru9I TTAA 3 cut(s) 41, 627, 881
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 2 cut(s) 243, 308
TseI GCWGC 4 cut(s) 110, 254, 374, 632
Tsp45I GTSAC 2 cut(s) 243, 308
TspDTI ATGAA 7 cut(s) 19, 47, 234, 354, 384, 447, 606
TspGWI ACGGA 2 cut(s) 69, 279
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 807
VspI ATTAAT 1 cut(s) 881
XceI RCATGY 1 cut(s) 476
XspI CTAG 2 cut(s) 45, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.