AT4G08270

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
5218105 .. 5218404
300 bp
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UTR
Exon/CDS
Intron
AT4G08270.1

Sequence Viewer

Length: 300 bp
ATGTCAAAAAGAAGGAAGTGTGACGAGGCTGCAGAATGTTCAAACCCCCAACCACTTTCTCATGGAATTGACGAAGCAATGCATCGTCCTATTGGTGTTTACCTGCAAAGACGAAAAAAGACTATAAGCAAGCCAACAACTACTGAAGACGAAGAGAAGGCTTCCCAGTCTATGTGGGAGATAAAGAAGAAGGATAACGAAATGAAAGAGGGGTTATCTAAGAACAAGATGCTGGACAGTCTCCTCTTGAAAACAGAGCCACTTTTTGATACGAATGTGCTCTCTATGACAAACAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

11.4

Weight (kDa)

8.91

Isoelectric Point (pI)

70.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019163)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 165
AgsI TTSAA 2 cut(s) 42, 250
Alw21I GWGCWC 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 29
BaeI ACNNNNGTAYC 2 cut(s) 261, 294
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 16
BcoDI GTCTC 1 cut(s) 245
BfmI CTRYAG 1 cut(s) 30
BfuAI ACCTGC 1 cut(s) 111
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmrI ACTGGG 1 cut(s) 160
BmsI GCATC 2 cut(s) 91, 219
BmuI ACTGGG 1 cut(s) 160
BpiI GAAGAC 1 cut(s) 153
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 233
BseXI GCAGC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 282
BspMAI CTGCAG 1 cut(s) 34
BspMI ACCTGC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 1 cut(s) 219
BstMAI GTCTC 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 16
BstV2I GAAGAC 1 cut(s) 153
BveI ACCTGC 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 131
CviAII CATG 1 cut(s) 62
CviJI RGCY 4 cut(s) 29, 133, 161, 259
CviKI_1 RGCY 4 cut(s) 29, 133, 161, 259
DdeI CTNAG 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 165
EcoT22I ATGCAT 1 cut(s) 84
FaeI CATG 1 cut(s) 65
FaiI YATR 4 cut(s) 63, 125, 173, 287
FatI CATG 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
Hin1II CATG 1 cut(s) 65
Hpy166II GTNNAC 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 6, 151, 184
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 3 cut(s) 32, 82, 106
HpyF3I CTNAG 1 cut(s) 219
Hsp92II CATG 1 cut(s) 65
LpnPI CCDG 3 cut(s) 116, 179, 218
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 2 cut(s) 91, 219
MaeIII GTNAC 1 cut(s) 20
MboII GAAGA 3 cut(s) 158, 164, 199
MhlI GDGCHC 1 cut(s) 282
MluCI AATT 1 cut(s) 66
MnlI CCTC 3 cut(s) 19, 202, 254
Mph1103I ATGCAT 1 cut(s) 84
NlaIII CATG 1 cut(s) 65
NmuCI GTSAC 1 cut(s) 20
NsiI ATGCAT 1 cut(s) 84
PkrI GCNGC 1 cut(s) 31
PstI CTGCAG 1 cut(s) 34
SatI GCNGC 1 cut(s) 30
SduI GDGCHC 1 cut(s) 282
SetI ASST 1 cut(s) 105
SfaNI GCATC 2 cut(s) 91, 219
SfcI CTRYAG 1 cut(s) 30
SgeI CNNG 8 cut(s) 37, 74, 115, 142, 178, 238, 245, 259
Sse9I AATT 1 cut(s) 66
TaaI ACNGT 1 cut(s) 239
TasI AATT 1 cut(s) 66
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.