AT2G07771

cytochrome c biosynthesis ccmC-like mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0018323
Physical Location & Seq
Reverse (-)
3239693 .. 3240463
771 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07771.2

Sequence Viewer

Length: 771 bp
ATGTCCGTTTCGTTATTACAACCTTCTTTTTTGATGTCAAAGACCAGAAGCTACGCGCAAATTCTCATTGGGTCTTGGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTGGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCTCTATGTACATGTTCCTGCGGCTCGGATGAGTATTATTGTTTATATCGCCACGGCTATAAACACTTTCTTGTTCCTATTAACAAAACATCCCCTTTATCTTCGCTCTTCCGGAACCGGTATAGAAATGGGTGCTTTTTTTACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACCAATGTGGGGGACCTTTTGGGTGTGGGATGCTCGTTTGACCTCTGTATTCATCTCGTTTCTTATTTACCTGGGTGCACTGCGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATTCGTGCTGGACCGATCGATATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATTAGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCTAACTTCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCTTTTCTCGAATCTCCTATAACGGAAGAAATTGAAGCTCGAGAAGGAATACCAAAACCTAGTTCACTCGCTCTCTTTGCATCCATGGCTGAATGGTTAAAGCGCCCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_C_asm

Protein Analysis

256

Amino Acids

28.46

Weight (kDa)

10.21

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_C_asm PF01578 5 - 173 1.7e-30 Cytochrome C assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07771 ATMG00900
prunus_persica Prupe.1G175300_v2.0.a1
pyrus_communis pycom12401g00140
rosa_chinensis RchiOBHm_MTg0498961
rosa_laevigata RLG00000000158 RLG00000000416 RLG00000000486
rosa_samantha Rh1BG018100 Rh1BG020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 1 cut(s) 179
AcsI RAATTY 2 cut(s) 60, 148
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 2 cut(s) 168, 553
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 3 cut(s) 169, 562, 641
AgeI ACCGGT 1 cut(s) 275
AgsI TTSAA 4 cut(s) 137, 428, 459, 692
AjiI CACGTC 1 cut(s) 644
AjnI CCWGG 2 cut(s) 408, 529
AjuI GAANNNNNNNTTGG 2 cut(s) 703, 735
AluBI AGCT 3 cut(s) 51, 433, 695
AluI AGCT 3 cut(s) 51, 433, 695
Alw21I GWGCWC 1 cut(s) 418
Alw44I GTGCAC 1 cut(s) 414
Ama87I CYCGRG 1 cut(s) 696
Aor13HI TCCGGA 1 cut(s) 269
ApaLI GTGCAC 1 cut(s) 414
ApoI RAATTY 2 cut(s) 60, 148
AsiGI ACCGGT 1 cut(s) 275
AspLEI GCGC 2 cut(s) 58, 762
AspS9I GGNCC 2 cut(s) 351, 470
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 2 cut(s) 351, 470
BaeGI GKGCMC 1 cut(s) 418
BbsI GAAGAC 3 cut(s) 343, 489, 638
Bbv12I GWGCWC 1 cut(s) 418
BccI CCATC 2 cut(s) 88, 664
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 2 cut(s) 410, 531
BfaI CTAG 2 cut(s) 128, 717
BfoI RGCGCY 1 cut(s) 763
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 410, 531
Bme18I GGWCC 2 cut(s) 351, 470
BmeT110I CYCGRG 1 cut(s) 696
BmgBI CACGTC 1 cut(s) 644
BmgT120I GGNCC 2 cut(s) 351, 470
BmiI GGNNCC 2 cut(s) 274, 352
BmrFI CCNGG 2 cut(s) 410, 531
BmrI ACTGGG 1 cut(s) 330
BmsI GCATC 3 cut(s) 358, 532, 746
BmuI ACTGGG 1 cut(s) 330
BpiI GAAGAC 3 cut(s) 343, 489, 638
Bsa29I ATCGAT 1 cut(s) 477
BsaJI CCNNGG 4 cut(s) 210, 409, 530, 741
BsaWI WCCGGW 2 cut(s) 269, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 2 cut(s) 275, 445
Bse1I ACTGG 2 cut(s) 325, 512
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 2 cut(s) 410, 531
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 4 cut(s) 210, 409, 530, 741
BseGI GGATG 4 cut(s) 192, 247, 373, 737
BseLI CCNNNNNNNGG 1 cut(s) 347
BseNI ACTGG 2 cut(s) 325, 512
BseSI GKGCMC 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 477
BshTI ACCGGT 1 cut(s) 275
BshVI ATCGAT 1 cut(s) 477
BsiEI CGRYCG 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 3 cut(s) 270, 276, 446
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 696
Bsp1286I GDGCHC 1 cut(s) 418
Bsp13I TCCGGA 1 cut(s) 269
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 3 cut(s) 130, 474, 545
Bsp19I CCATGG 1 cut(s) 741
BspACI CCGC 1 cut(s) 179
BspDI ATCGAT 1 cut(s) 477
BspEI TCCGGA 1 cut(s) 269
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 2 cut(s) 274, 352
BspQI GCTCTTC 1 cut(s) 271
BsrFI RCCGGY 2 cut(s) 275, 445
BsrGI TGTACA 1 cut(s) 166
BsrI ACTGG 2 cut(s) 325, 512
BssAI RCCGGY 2 cut(s) 275, 445
BssECI CCNNGG 4 cut(s) 210, 409, 530, 741
BssMI GATC 3 cut(s) 130, 474, 545
BssT1I CCWWGG 1 cut(s) 741
Bst2UI CCWGG 2 cut(s) 410, 531
Bst6I CTCTTC 1 cut(s) 271
BstAUI TGTACA 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 313
BstDSI CCRYGG 2 cut(s) 210, 741
BstF5I GGATG 4 cut(s) 192, 247, 373, 737
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 763
BstHHI GCGC 2 cut(s) 58, 762
BstKTI GATC 3 cut(s) 133, 477, 548
BstMBI GATC 3 cut(s) 130, 474, 545
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 2 cut(s) 734, 743
BstNI CCWGG 2 cut(s) 410, 531
BstNSI RCATGY 2 cut(s) 173, 566
BstSCI CCNGG 2 cut(s) 408, 529
BstSLI GKGCMC 1 cut(s) 418
BstUI CGCG 1 cut(s) 56
BstV2I GAAGAC 3 cut(s) 343, 489, 638
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 477
BsuTUI ATCGAT 1 cut(s) 477
BtgI CCRYGG 2 cut(s) 210, 741
BtgZI GCGATG 2 cut(s) 107, 504
BtrI CACGTC 1 cut(s) 644
BtsCI GGATG 4 cut(s) 192, 247, 373, 737
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 416
CfoI GCGC 2 cut(s) 58, 762
Cfr10I RCCGGY 2 cut(s) 275, 445
Cfr13I GGNCC 2 cut(s) 351, 470
ClaI ATCGAT 1 cut(s) 477
Csp6I GTAC 2 cut(s) 167, 552
CspAI ACCGGT 1 cut(s) 275
CviAII CATG 3 cut(s) 170, 563, 742
CviJI RGCY 9 cut(s) 51, 98, 182, 215, 433, 449, 543, 695, 746
CviKI_1 RGCY 9 cut(s) 51, 98, 182, 215, 433, 449, 543, 695, 746
CviQI GTAC 2 cut(s) 167, 552
DdeI CTNAG 1 cut(s) 313
DpnI GATC 3 cut(s) 132, 476, 547
DpnII GATC 3 cut(s) 130, 474, 545
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 741
Eco47I GGWCC 2 cut(s) 351, 470
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 696
EcoO109I RGGNCCY 1 cut(s) 351
EcoRII CCWGG 2 cut(s) 408, 529
EcoT14I CCWWGG 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 741
FaeI CATG 3 cut(s) 173, 566, 745
FaqI GGGAC 1 cut(s) 364
FatI CATG 3 cut(s) 169, 562, 741
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 4 cut(s) 199, 234, 380, 724
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 128, 717
GlaI GCGC 2 cut(s) 57, 761
GluI GCNGC 1 cut(s) 180
HaeII RGCGCY 1 cut(s) 763
HapII CCGG 3 cut(s) 270, 276, 446
HhaI GCGC 2 cut(s) 58, 762
Hin1II CATG 3 cut(s) 173, 566, 745
Hin6I GCGC 2 cut(s) 56, 760
HinP1I GCGC 2 cut(s) 56, 760
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 1 cut(s) 668
HpaII CCGG 3 cut(s) 270, 276, 446
Hpy166II GTNNAC 4 cut(s) 309, 416, 505, 722
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 4 cut(s) 270, 635, 665, 698
Hpy8I GTNNAC 4 cut(s) 309, 416, 505, 722
HpyAV CCTTC 3 cut(s) 33, 619, 695
HpyCH4IV ACGT 2 cut(s) 302, 643
HpyCH4V TGCA 2 cut(s) 416, 737
HpyF10VI GCNNNNNNNGC 2 cut(s) 734, 743
HpyF3I CTNAG 1 cut(s) 313
HpySE526I ACGT 2 cut(s) 302, 643
Hsp92II CATG 3 cut(s) 173, 566, 745
HspAI GCGC 2 cut(s) 56, 760
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 3 cut(s) 130, 474, 545
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 534
LweI GCATC 3 cut(s) 358, 532, 746
MaeI CTAG 2 cut(s) 128, 717
MaeII ACGT 2 cut(s) 302, 643
MaeIII GTNAC 1 cut(s) 316
MalI GATC 3 cut(s) 132, 476, 547
MboI GATC 3 cut(s) 130, 474, 545
MboII GAAGA 7 cut(s) 125, 251, 258, 348, 489, 638, 695
MflI RGATCY 1 cut(s) 130
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 4 cut(s) 60, 148, 459, 687
MnlI CCTC 1 cut(s) 391
MroI TCCGGA 1 cut(s) 269
MseI TTAA 4 cut(s) 86, 107, 239, 755
MspI CCGG 3 cut(s) 270, 276, 446
MspR9I CCNGG 2 cut(s) 410, 531
MvaI CCWGG 2 cut(s) 410, 531
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 734, 743
NcoI CCATGG 1 cut(s) 741
NdeII GATC 3 cut(s) 130, 474, 545
NlaIII CATG 3 cut(s) 173, 566, 745
NlaIV GGNNCC 2 cut(s) 274, 352
NspI RCATGY 2 cut(s) 173, 566
PaeR7I CTCGAG 1 cut(s) 696
PciI ACATGT 2 cut(s) 169, 562
PciSI GCTCTTC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 668
PinAI ACCGGT 1 cut(s) 275
PkrI GCNGC 1 cut(s) 181
Ple19I CGATCG 1 cut(s) 477
PpuMI RGGWCCY 1 cut(s) 351
PscI ACATGT 2 cut(s) 169, 562
Psp5II RGGWCCY 1 cut(s) 351
Psp6I CCWGG 2 cut(s) 408, 529
PspGI CCWGG 2 cut(s) 408, 529
PspN4I GGNNCC 2 cut(s) 274, 352
PspPI GGNCC 2 cut(s) 351, 470
PspPPI RGGWCCY 1 cut(s) 351
PsuI RGATCY 1 cut(s) 130
PvuI CGATCG 1 cut(s) 477
RsaI GTAC 2 cut(s) 168, 553
RsaNI GTAC 2 cut(s) 167, 552
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 4 cut(s) 86, 107, 239, 755
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 3 cut(s) 130, 474, 545
Sau96I GGNCC 2 cut(s) 351, 470
ScrFI CCNGG 2 cut(s) 410, 531
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 3 cut(s) 358, 532, 746
Sfr274I CTCGAG 1 cut(s) 696
SinI GGWCC 2 cut(s) 351, 470
SlaI CTCGAG 1 cut(s) 696
SmlI CTYRAG 1 cut(s) 696
SmoI CTYRAG 1 cut(s) 696
Sse9I AATT 4 cut(s) 60, 148, 459, 687
SsiI CCGC 1 cut(s) 179
SspMI CTAG 2 cut(s) 128, 717
StyD4I CCNGG 2 cut(s) 408, 529
StyI CCWWGG 1 cut(s) 741
TaiI ACGT 2 cut(s) 305, 646
TaqI TCGA 4 cut(s) 441, 477, 666, 697
TaqII GACCGA 1 cut(s) 487
TasI AATT 4 cut(s) 60, 148, 459, 687
TatI WGTACW 1 cut(s) 166
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 4 cut(s) 86, 107, 239, 755
Tru9I TTAA 4 cut(s) 86, 107, 239, 755
TscAI CASTG 1 cut(s) 423
TspDTI ATGAA 2 cut(s) 92, 379
TspGWI ACGGA 1 cut(s) 695
TspRI CASTG 1 cut(s) 423
VneI GTGCAC 1 cut(s) 414
VpaK11BI GGWCC 2 cut(s) 351, 470
XapI RAATTY 2 cut(s) 60, 148
XceI RCATGY 2 cut(s) 173, 566
XhoI CTCGAG 1 cut(s) 696
XspI CTAG 2 cut(s) 128, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.