RCHIOBHM_MTG0498961

cytochrome c biosynthesis ccmC-like mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
OG0018323
Physical Location & Seq
Forward (+)
213121 .. 213989
869 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15650

Sequence Viewer

Length: 753 bp
ATGTCCGTTTCGTTATTACGACCTTATTTTTTGATGTCAAAGACCAGAAGCTACGCGCAAATTATCATTGGATCTCGGTTGTTCTTAACAGCGATGGCTATTCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCCGTATGTACATGTTCCTGCGGCTCGGATGAGTATTCTTGTTTATATCGCTACGGCTATAAGCACTTTCTTTTTCCTATTAACAAAACATCCCCTTTTTCTTCGCTCTTCCGGAACCGGTACAGAAATTGGTGCCTTTTTTACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACCTATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTCCTTATTTACCTGGGTGCACTGCGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATCCGTGCTGGACCGATCGATATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATTAGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCTAACTCCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCTTTTCCCGAATCTCCTTTAACGGAAGAAATAGAAGCTCGAGAAGGAATAGCAAAACCTAGTTCACTCGCTGAGTCTCTTTGCATCCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_C_asm

Protein Analysis

250

Amino Acids

27.68

Weight (kDa)

10.31

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_C_asm PF01578 6 - 173 4.4e-29 Cytochrome C assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07771 ATMG00900
prunus_persica Prupe.1G175300_v2.0.a1
pyrus_communis pycom12401g00140
rosa_chinensis RchiOBHm_MTg0498961
rosa_laevigata RLG00000000158 RLG00000000416 RLG00000000486
rosa_samantha Rh1BG018100 Rh1BG020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 290, 350
AccII CGCG 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 269
AciI CCGC 1 cut(s) 179
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 483
AfaI GTAC 3 cut(s) 168, 280, 553
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 3 cut(s) 169, 562, 641
AgeI ACCGGT 1 cut(s) 275
AgsI TTSAA 3 cut(s) 137, 428, 459
AjiI CACGTC 1 cut(s) 644
AjnI CCWGG 2 cut(s) 408, 529
AluBI AGCT 3 cut(s) 51, 433, 695
AluI AGCT 3 cut(s) 51, 433, 695
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 738
Alw44I GTGCAC 1 cut(s) 414
AlwI GGATC 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 696
Aor13HI TCCGGA 1 cut(s) 269
ApaLI GTGCAC 1 cut(s) 414
ApoI RAATTY 1 cut(s) 148
AsiGI ACCGGT 1 cut(s) 275
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 470
AvaI CYCGRG 1 cut(s) 696
AvaII GGWCC 1 cut(s) 470
BaeGI GKGCMC 2 cut(s) 353, 418
BanI GGYRCC 2 cut(s) 290, 350
BbsI GAAGAC 4 cut(s) 104, 343, 489, 638
Bbv12I GWGCWC 1 cut(s) 418
BccI CCATC 2 cut(s) 88, 664
BceAI ACGGC 1 cut(s) 228
BciT130I CCWGG 2 cut(s) 410, 531
BcoDI GTCTC 1 cut(s) 738
BfaI CTAG 2 cut(s) 128, 717
BglII AGATCT 1 cut(s) 130
BisI GCNGC 1 cut(s) 180
BlsI GCNGC 1 cut(s) 181
Bme1390I CCNGG 2 cut(s) 410, 531
Bme18I GGWCC 1 cut(s) 470
BmeT110I CYCGRG 1 cut(s) 696
BmgBI CACGTC 1 cut(s) 644
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 3 cut(s) 274, 292, 352
BmrFI CCNGG 2 cut(s) 410, 531
BmrI ACTGGG 1 cut(s) 330
BmsI GCATC 2 cut(s) 358, 532
BmuI ACTGGG 1 cut(s) 330
BpiI GAAGAC 4 cut(s) 104, 343, 489, 638
Bsa29I ATCGAT 1 cut(s) 477
BsaJI CCNNGG 3 cut(s) 409, 530, 745
BsaWI WCCGGW 2 cut(s) 269, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse118I RCCGGY 2 cut(s) 275, 445
Bse1I ACTGG 2 cut(s) 325, 512
BseAI TCCGGA 1 cut(s) 269
BseBI CCWGG 2 cut(s) 410, 531
BseCI ATCGAT 1 cut(s) 477
BseDI CCNNGG 3 cut(s) 409, 530, 745
BseGI GGATG 4 cut(s) 192, 247, 373, 741
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMII CTCAG 1 cut(s) 720
BseNI ACTGG 2 cut(s) 325, 512
BseSI GKGCMC 2 cut(s) 353, 418
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 477
BshNI GGYRCC 2 cut(s) 290, 350
BshTI ACCGGT 1 cut(s) 275
BshVI ATCGAT 1 cut(s) 477
BsiEI CGRYCG 1 cut(s) 477
BsiHKAI GWGCWC 1 cut(s) 418
BsiHKCI CYCGRG 1 cut(s) 696
BsiSI CCGG 3 cut(s) 270, 276, 446
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 738
BsoBI CYCGRG 1 cut(s) 696
Bsp1286I GDGCHC 2 cut(s) 353, 418
Bsp13I TCCGGA 1 cut(s) 269
Bsp1407I TGTACA 1 cut(s) 166
Bsp143I GATC 4 cut(s) 71, 130, 474, 545
Bsp19I CCATGG 1 cut(s) 745
BspACI CCGC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 721
BspDI ATCGAT 1 cut(s) 477
BspEI TCCGGA 1 cut(s) 269
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 3 cut(s) 274, 292, 352
BspPI GGATC 1 cut(s) 79
BspQI GCTCTTC 1 cut(s) 271
BspT107I GGYRCC 2 cut(s) 290, 350
BsrFI RCCGGY 2 cut(s) 275, 445
BsrGI TGTACA 1 cut(s) 166
BsrI ACTGG 2 cut(s) 325, 512
BssAI RCCGGY 2 cut(s) 275, 445
BssECI CCNNGG 3 cut(s) 409, 530, 745
BssMI GATC 4 cut(s) 71, 130, 474, 545
BssT1I CCWWGG 1 cut(s) 745
Bst2UI CCWGG 2 cut(s) 410, 531
Bst6I CTCTTC 1 cut(s) 271
BstAUI TGTACA 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 313, 729
BstDSI CCRYGG 1 cut(s) 745
BstF5I GGATG 4 cut(s) 192, 247, 373, 741
BstFNI CGCG 1 cut(s) 56
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 4 cut(s) 74, 133, 477, 548
BstMAI GTCTC 1 cut(s) 738
BstMBI GATC 4 cut(s) 71, 130, 474, 545
BstMCI CGRYCG 1 cut(s) 477
BstMWI GCNNNNNNNGC 1 cut(s) 747
BstNI CCWGG 2 cut(s) 410, 531
BstNSI RCATGY 2 cut(s) 173, 566
BstSCI CCNGG 2 cut(s) 408, 529
BstSLI GKGCMC 2 cut(s) 353, 418
BstUI CGCG 1 cut(s) 56
BstV2I GAAGAC 4 cut(s) 104, 343, 489, 638
BstX2I RGATCY 2 cut(s) 71, 130
BstYI RGATCY 2 cut(s) 71, 130
Bsu15I ATCGAT 1 cut(s) 477
BsuTUI ATCGAT 1 cut(s) 477
BtgI CCRYGG 1 cut(s) 745
BtgZI GCGATG 2 cut(s) 107, 504
BtrI CACGTC 1 cut(s) 644
BtsCI GGATG 4 cut(s) 192, 247, 373, 741
BtsI GCAGTG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 416
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 2 cut(s) 275, 445
Cfr13I GGNCC 1 cut(s) 470
ClaI ATCGAT 1 cut(s) 477
Csp6I GTAC 3 cut(s) 167, 279, 552
CspAI ACCGGT 1 cut(s) 275
CviAII CATG 3 cut(s) 170, 563, 746
CviJI RGCY 9 cut(s) 51, 98, 182, 215, 433, 449, 543, 695, 750
CviKI_1 RGCY 9 cut(s) 51, 98, 182, 215, 433, 449, 543, 695, 750
CviQI GTAC 3 cut(s) 167, 279, 552
DdeI CTNAG 2 cut(s) 313, 729
DpnI GATC 4 cut(s) 73, 132, 476, 547
DpnII GATC 4 cut(s) 71, 130, 474, 545
Eam1104I CTCTTC 1 cut(s) 271
EarI CTCTTC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 696
EcoRII CCWGG 2 cut(s) 408, 529
EcoT14I CCWWGG 1 cut(s) 745
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 3 cut(s) 173, 566, 749
FaiI YATR 9 cut(s) 165, 171, 204, 218, 344, 482, 564, 572, 747
FatI CATG 3 cut(s) 169, 562, 745
Fnu4HI GCNGC 1 cut(s) 180
FokI GGATG 4 cut(s) 199, 234, 380, 728
Fsp4HI GCNGC 1 cut(s) 180
FspBI CTAG 2 cut(s) 128, 717
GlaI GCGC 1 cut(s) 57
GluI GCNGC 1 cut(s) 180
HapII CCGG 3 cut(s) 270, 276, 446
HhaI GCGC 1 cut(s) 58
Hin1II CATG 3 cut(s) 173, 566, 749
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 431
HinfI GANTC 2 cut(s) 668, 731
HpaII CCGG 3 cut(s) 270, 276, 446
Hpy166II GTNNAC 4 cut(s) 309, 416, 505, 722
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 4 cut(s) 270, 635, 665, 698
Hpy8I GTNNAC 4 cut(s) 309, 416, 505, 722
HpyAV CCTTC 2 cut(s) 619, 695
HpyCH4IV ACGT 2 cut(s) 302, 643
HpyCH4V TGCA 2 cut(s) 416, 741
HpyF10VI GCNNNNNNNGC 1 cut(s) 747
HpyF3I CTNAG 2 cut(s) 313, 729
HpySE526I ACGT 2 cut(s) 302, 643
Hsp92II CATG 3 cut(s) 173, 566, 749
HspAI GCGC 1 cut(s) 56
Kpn2I TCCGGA 1 cut(s) 269
Kzo9I GATC 4 cut(s) 71, 130, 474, 545
LguI GCTCTTC 1 cut(s) 271
LmnI GCTCC 1 cut(s) 534
LweI GCATC 2 cut(s) 358, 532
MaeI CTAG 2 cut(s) 128, 717
MaeII ACGT 2 cut(s) 302, 643
MaeIII GTNAC 1 cut(s) 316
MalI GATC 4 cut(s) 73, 132, 476, 547
MboI GATC 4 cut(s) 71, 130, 474, 545
MboII GAAGA 8 cut(s) 104, 125, 251, 258, 348, 489, 638, 695
MflI RGATCY 2 cut(s) 71, 130
MhlI GDGCHC 2 cut(s) 353, 418
MluCI AATT 3 cut(s) 60, 148, 285
MlyI GAGTC 1 cut(s) 740
MnlI CCTC 1 cut(s) 391
MroI TCCGGA 1 cut(s) 269
MseI TTAA 5 cut(s) 86, 107, 239, 377, 677
MspI CCGG 3 cut(s) 270, 276, 446
MspR9I CCNGG 2 cut(s) 410, 531
MvaI CCWGG 2 cut(s) 410, 531
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 747
NcoI CCATGG 1 cut(s) 745
NdeII GATC 4 cut(s) 71, 130, 474, 545
NlaIII CATG 3 cut(s) 173, 566, 749
NlaIV GGNNCC 3 cut(s) 274, 292, 352
NspI RCATGY 2 cut(s) 173, 566
PaeR7I CTCGAG 1 cut(s) 696
PciI ACATGT 2 cut(s) 169, 562
PciSI GCTCTTC 1 cut(s) 271
PfeI GAWTC 1 cut(s) 668
PinAI ACCGGT 1 cut(s) 275
PkrI GCNGC 1 cut(s) 181
Ple19I CGATCG 1 cut(s) 477
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
PscI ACATGT 2 cut(s) 169, 562
Psp6I CCWGG 2 cut(s) 408, 529
PspGI CCWGG 2 cut(s) 408, 529
PspN4I GGNNCC 3 cut(s) 274, 292, 352
PspPI GGNCC 1 cut(s) 470
PsuI RGATCY 2 cut(s) 71, 130
PvuI CGATCG 1 cut(s) 477
RsaI GTAC 3 cut(s) 168, 280, 553
RsaNI GTAC 3 cut(s) 167, 279, 552
SapI GCTCTTC 1 cut(s) 271
SaqAI TTAA 5 cut(s) 86, 107, 239, 377, 677
SatI GCNGC 1 cut(s) 180
Sau3AI GATC 4 cut(s) 71, 130, 474, 545
Sau96I GGNCC 1 cut(s) 470
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 2 cut(s) 410, 531
SduI GDGCHC 2 cut(s) 353, 418
SfaNI GCATC 2 cut(s) 358, 532
Sfr274I CTCGAG 1 cut(s) 696
SinI GGWCC 1 cut(s) 470
SlaI CTCGAG 1 cut(s) 696
SmlI CTYRAG 1 cut(s) 696
SmoI CTYRAG 1 cut(s) 696
Sse9I AATT 3 cut(s) 60, 148, 285
SsiI CCGC 1 cut(s) 179
SspMI CTAG 2 cut(s) 128, 717
StyD4I CCNGG 2 cut(s) 408, 529
StyI CCWWGG 1 cut(s) 745
TaiI ACGT 2 cut(s) 305, 646
TaqI TCGA 3 cut(s) 441, 477, 697
TaqII GACCGA 1 cut(s) 487
TasI AATT 3 cut(s) 60, 148, 285
TatI WGTACW 1 cut(s) 166
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 5 cut(s) 86, 107, 239, 377, 677
Tru9I TTAA 5 cut(s) 86, 107, 239, 377, 677
TscAI CASTG 1 cut(s) 423
TspDTI ATGAA 2 cut(s) 92, 379
TspGWI ACGGA 3 cut(s) 150, 452, 695
TspRI CASTG 1 cut(s) 423
VneI GTGCAC 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 148
XceI RCATGY 2 cut(s) 173, 566
XhoI CTCGAG 1 cut(s) 696
XspI CTAG 2 cut(s) 128, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.