Prupe.1G175300_v2.0.a1

cytochrome c biosynthesis ccmC-like mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018323
Physical Location & Seq
Reverse (-)
14773587 .. 14774232
646 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G175300.1

Sequence Viewer

Length: 645 bp
ATGGTTATTCATTTAAGTCTTTGGGTAGCACCACTAGATCTTCAACAAGCTGGAAATTCTCGTATTCCATATGTACATGTTCCTGCGGCTCATATGAGTATTCTTGTTTATATCGCTACGGCTATAAACACTTTCCTTTTCCTATTAACAAAACACCCCTTATTTCTTCGCTCTTCCGGAACTGGTACAGAAATTGGTGCTTTTTTTACGTTGTTAACCTTATTATTTGGGGTTTCGAGGGGCACCTTTTGGGTATGGGATACTCGTTTAACCTCTGTATTCATCTCGTTCCTTATTTACCTGGGTGCACTGCATTTTCAAAAGCTTCCTGTCGAACCGGGTTCTATTTCAATCCGTGCTGGACCGATCGATATACCAATAATCAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATTAGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCTAACTCCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACATGTCGTCCTATTCCATATTTTCTCAAATCTCCTTTAACGGAAGAAATAAAAGCTCGAGAAGGAATACCAAAACCTAGTTTACCCATCGAGTCTTTGTACATCCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_C_asm

Protein Analysis

215

Amino Acids

23.78

Weight (kDa)

9.61

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07771 ATMG00900
prunus_persica Prupe.1G175300_v2.0.a1
pyrus_communis pycom12401g00140
rosa_chinensis RchiOBHm_MTg0498961
rosa_laevigata RLG00000000158 RLG00000000416 RLG00000000486
rosa_samantha Rh1BG018100 Rh1BG020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 4 cut(s) 75, 187, 445, 632
AflIII ACRYGT 3 cut(s) 76, 454, 533
AgsI TTSAA 3 cut(s) 44, 320, 351
AjnI CCWGG 2 cut(s) 300, 421
AluBI AGCT 3 cut(s) 50, 325, 587
AluI AGCT 3 cut(s) 50, 325, 587
Alw21I GWGCWC 1 cut(s) 310
Alw44I GTGCAC 1 cut(s) 306
Ama87I CYCGRG 1 cut(s) 588
Aor13HI TCCGGA 1 cut(s) 176
ApaLI GTGCAC 1 cut(s) 306
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 362
AsuC2I CCSGG 1 cut(s) 339
AvaI CYCGRG 1 cut(s) 588
AvaII GGWCC 1 cut(s) 362
BaeGI GKGCMC 2 cut(s) 245, 310
BanI GGYRCC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 310
BccI CCATC 1 cut(s) 626
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 302, 423
BciVI GTATCC 1 cut(s) 253
BcnI CCSGG 1 cut(s) 339
BfaI CTAG 2 cut(s) 35, 609
BfuI GTATCC 1 cut(s) 253
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 302, 339, 423
Bme18I GGWCC 1 cut(s) 362
BmeT110I CYCGRG 1 cut(s) 588
BmgT120I GGNCC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 3 cut(s) 302, 339, 423
BmsI GCATC 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 339
Bsa29I ATCGAT 1 cut(s) 369
BsaJI CCNNGG 3 cut(s) 301, 422, 637
BsaWI WCCGGW 1 cut(s) 176
Bse1I ACTGG 2 cut(s) 187, 404
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 2 cut(s) 302, 423
BseCI ATCGAT 1 cut(s) 369
BseDI CCNNGG 3 cut(s) 301, 422, 637
BseGI GGATG 1 cut(s) 633
BseNI ACTGG 2 cut(s) 187, 404
BseSI GKGCMC 2 cut(s) 245, 310
Bsh1285I CGRYCG 1 cut(s) 369
BshNI GGYRCC 1 cut(s) 242
BshVI ATCGAT 1 cut(s) 369
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 588
BsiSI CCGG 2 cut(s) 177, 338
BsoBI CYCGRG 1 cut(s) 588
Bsp1286I GDGCHC 2 cut(s) 245, 310
Bsp13I TCCGGA 1 cut(s) 176
Bsp1407I TGTACA 2 cut(s) 73, 630
Bsp143I GATC 3 cut(s) 37, 366, 437
Bsp19I CCATGG 1 cut(s) 637
BspACI CCGC 1 cut(s) 86
BspDI ATCGAT 1 cut(s) 369
BspEI TCCGGA 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 244
BspQI GCTCTTC 1 cut(s) 178
BspT107I GGYRCC 1 cut(s) 242
BsrGI TGTACA 2 cut(s) 73, 630
BsrI ACTGG 2 cut(s) 187, 404
BssECI CCNNGG 3 cut(s) 301, 422, 637
BssMI GATC 3 cut(s) 37, 366, 437
BssT1I CCWWGG 1 cut(s) 637
Bst2UI CCWGG 2 cut(s) 302, 423
Bst6I CTCTTC 1 cut(s) 178
BstAUI TGTACA 2 cut(s) 73, 630
BstDSI CCRYGG 1 cut(s) 637
BstF5I GGATG 1 cut(s) 633
BstKTI GATC 3 cut(s) 40, 369, 440
BstMBI GATC 3 cut(s) 37, 366, 437
BstMCI CGRYCG 1 cut(s) 369
BstNI CCWGG 2 cut(s) 302, 423
BstNSI RCATGY 3 cut(s) 80, 458, 537
BstSCI CCNGG 3 cut(s) 300, 337, 421
BstSLI GKGCMC 2 cut(s) 245, 310
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 369
BsuI GTATCC 1 cut(s) 253
BsuTUI ATCGAT 1 cut(s) 369
BtgI CCRYGG 1 cut(s) 637
BtgZI GCGATG 1 cut(s) 396
BtsCI GGATG 1 cut(s) 633
BtsI GCAGTG 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 362
ClaI ATCGAT 1 cut(s) 369
Csp6I GTAC 4 cut(s) 74, 186, 444, 631
CviAII CATG 4 cut(s) 77, 455, 534, 638
CviJI RGCY 7 cut(s) 50, 89, 122, 325, 435, 587, 642
CviKI_1 RGCY 7 cut(s) 50, 89, 122, 325, 435, 587, 642
CviQI GTAC 4 cut(s) 74, 186, 444, 631
DpnI GATC 3 cut(s) 39, 368, 439
DpnII GATC 3 cut(s) 37, 366, 437
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 362
Eco57I CTGAAG 1 cut(s) 375
Eco88I CYCGRG 1 cut(s) 588
EcoRII CCWGG 2 cut(s) 300, 421
EcoT14I CCWWGG 1 cut(s) 637
ErhI CCWWGG 1 cut(s) 637
FaeI CATG 4 cut(s) 80, 458, 537, 641
FatI CATG 4 cut(s) 76, 454, 533, 637
FauNDI CATATG 2 cut(s) 70, 93
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 620
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 35, 609
GluI GCNGC 1 cut(s) 87
HapII CCGG 2 cut(s) 177, 338
Hin1II CATG 4 cut(s) 80, 458, 537, 641
HincII GTYRAC 2 cut(s) 216, 397
HindII GTYRAC 2 cut(s) 216, 397
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 1 cut(s) 623
HpaI GTTAAC 1 cut(s) 216
HpaII CCGG 2 cut(s) 177, 338
Hpy166II GTNNAC 4 cut(s) 216, 308, 397, 614
Hpy188III TCNNGA 3 cut(s) 177, 527, 590
Hpy8I GTNNAC 4 cut(s) 216, 308, 397, 614
HpyAV CCTTC 2 cut(s) 511, 587
HpyCH4IV ACGT 1 cut(s) 209
HpyCH4V TGCA 2 cut(s) 308, 313
HpySE526I ACGT 1 cut(s) 209
Hsp92II CATG 4 cut(s) 80, 458, 537, 641
Kpn2I TCCGGA 1 cut(s) 176
KspAI GTTAAC 1 cut(s) 216
Kzo9I GATC 3 cut(s) 37, 366, 437
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 426
LweI GCATC 1 cut(s) 424
MaeI CTAG 2 cut(s) 35, 609
MaeII ACGT 1 cut(s) 209
MalI GATC 3 cut(s) 39, 368, 439
MboI GATC 3 cut(s) 37, 366, 437
MboII GAAGA 5 cut(s) 32, 158, 165, 381, 587
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 245, 310
MluCI AATT 2 cut(s) 55, 192
MlyI GAGTC 1 cut(s) 632
MnlI CCTC 2 cut(s) 231, 283
MroI TCCGGA 1 cut(s) 176
MseI TTAA 5 cut(s) 14, 146, 215, 269, 569
MspI CCGG 2 cut(s) 177, 338
MspR9I CCNGG 3 cut(s) 302, 339, 423
MvaI CCWGG 2 cut(s) 302, 423
NciI CCSGG 1 cut(s) 339
NcoI CCATGG 1 cut(s) 637
NdeI CATATG 2 cut(s) 70, 93
NdeII GATC 3 cut(s) 37, 366, 437
NlaIII CATG 4 cut(s) 80, 458, 537, 641
NlaIV GGNNCC 1 cut(s) 244
NspI RCATGY 3 cut(s) 80, 458, 537
PaeR7I CTCGAG 1 cut(s) 588
PciI ACATGT 3 cut(s) 76, 454, 533
PciSI GCTCTTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 88
Ple19I CGATCG 1 cut(s) 369
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
PscI ACATGT 3 cut(s) 76, 454, 533
Psp6I CCWGG 2 cut(s) 300, 421
PspGI CCWGG 2 cut(s) 300, 421
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 362
PsuI RGATCY 1 cut(s) 37
PvuI CGATCG 1 cut(s) 369
RsaI GTAC 4 cut(s) 75, 187, 445, 632
RsaNI GTAC 4 cut(s) 74, 186, 444, 631
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 5 cut(s) 14, 146, 215, 269, 569
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 3 cut(s) 37, 366, 437
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 632
ScrFI CCNGG 3 cut(s) 302, 339, 423
SduI GDGCHC 2 cut(s) 245, 310
SfaNI GCATC 1 cut(s) 424
Sfr274I CTCGAG 1 cut(s) 588
SinI GGWCC 1 cut(s) 362
SlaI CTCGAG 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 588
SmoI CTYRAG 1 cut(s) 588
Sse9I AATT 2 cut(s) 55, 192
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 35, 609
StyD4I CCNGG 3 cut(s) 300, 337, 421
StyI CCWWGG 1 cut(s) 637
TaiI ACGT 1 cut(s) 212
TaqI TCGA 5 cut(s) 236, 333, 369, 589, 621
TaqII GACCGA 1 cut(s) 379
TasI AATT 2 cut(s) 55, 192
TatI WGTACW 2 cut(s) 73, 630
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 5 cut(s) 14, 146, 215, 269, 569
Tru9I TTAA 5 cut(s) 14, 146, 215, 269, 569
TscAI CASTG 1 cut(s) 315
TspDTI ATGAA 1 cut(s) 271
TspGWI ACGGA 2 cut(s) 344, 587
TspRI CASTG 1 cut(s) 315
VneI GTGCAC 1 cut(s) 306
VpaK11BI GGWCC 1 cut(s) 362
XapI RAATTY 1 cut(s) 55
XceI RCATGY 3 cut(s) 80, 458, 537
XhoI CTCGAG 1 cut(s) 588
XspI CTAG 2 cut(s) 35, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.