RLG00000000416

cytochrome c biosynthesis ccmC-like mitochondrial

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018323
Physical Location & Seq
Forward (+)
902892 .. 903551
660 bp
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UTR
Exon/CDS
Intron
RLM00000000416

Sequence Viewer

Length: 660 bp
ATGGCTATTCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCCGTATGTACATGTTCCTGCGGCTCGGATGAGTATTCTTGTTTATATCGCTACGGCTATAAGCACTTTCTTTTTTCTATTAACAAAACATCCCCTTTTTCTTCGCTCTTCCGGAACCGGTACAGAAATTGGTGCCTTTTTTACGTTGTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACCTATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTCCTTATTTACCTGGGTGCACTGCGTTTTCAAAAGCTTCCTGTCGAACCGGCTTCTATTTCAATCCGTGCTGGACCGATCGATATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGAGCATTAGCCGATCTGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCTAACTCCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCTTTTCCCGAATCTCCTTTAACGGAAGAAATAGAAGCTCGAGAAGGAATAGCAAAACCTAGTTCACTCGCTGAGTCTCTTTGCATCCATGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_C_asm

Protein Analysis

220

Amino Acids

24.13

Weight (kDa)

9.88

Isoelectric Point (pI)

51.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cytochrom_C_asm PF01578 11 - 142 8.9e-28 Cytochrome C assembly protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018323)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G07771 ATMG00900
prunus_persica Prupe.1G175300_v2.0.a1
pyrus_communis pycom12401g00140
rosa_chinensis RchiOBHm_MTg0498961
rosa_laevigata RLG00000000158 RLG00000000416 RLG00000000486
rosa_samantha Rh1BG018100 Rh1BG020500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 197, 257
AccIII TCCGGA 1 cut(s) 176
AciI CCGC 1 cut(s) 86
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 390
AfaI GTAC 3 cut(s) 75, 187, 460
AfiI CCNNNNNNNGG 1 cut(s) 254
AflIII ACRYGT 3 cut(s) 76, 469, 548
AgeI ACCGGT 1 cut(s) 182
AgsI TTSAA 3 cut(s) 44, 335, 366
AjiI CACGTC 1 cut(s) 551
AjnI CCWGG 2 cut(s) 315, 436
AluBI AGCT 2 cut(s) 340, 602
AluI AGCT 2 cut(s) 340, 602
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 1 cut(s) 645
Alw44I GTGCAC 1 cut(s) 321
Ama87I CYCGRG 1 cut(s) 603
Aor13HI TCCGGA 1 cut(s) 176
ApaLI GTGCAC 1 cut(s) 321
ApoI RAATTY 1 cut(s) 55
AsiGI ACCGGT 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 1 cut(s) 377
BaeGI GKGCMC 2 cut(s) 260, 325
BanI GGYRCC 2 cut(s) 197, 257
BbsI GAAGAC 4 cut(s) 11, 250, 396, 545
Bbv12I GWGCWC 1 cut(s) 325
BccI CCATC 1 cut(s) 571
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 317, 438
BcoDI GTCTC 1 cut(s) 645
BfaI CTAG 2 cut(s) 35, 624
BglII AGATCT 1 cut(s) 37
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 2 cut(s) 317, 438
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 1 cut(s) 603
BmgBI CACGTC 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 3 cut(s) 181, 199, 259
BmrFI CCNGG 2 cut(s) 317, 438
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 2 cut(s) 265, 439
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 4 cut(s) 11, 250, 396, 545
Bsa29I ATCGAT 1 cut(s) 384
BsaJI CCNNGG 3 cut(s) 316, 437, 652
BsaWI WCCGGW 2 cut(s) 176, 182
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse118I RCCGGY 2 cut(s) 182, 352
Bse1I ACTGG 2 cut(s) 232, 419
BseAI TCCGGA 1 cut(s) 176
BseBI CCWGG 2 cut(s) 317, 438
BseCI ATCGAT 1 cut(s) 384
BseDI CCNNGG 3 cut(s) 316, 437, 652
BseGI GGATG 4 cut(s) 99, 154, 280, 648
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 2 cut(s) 232, 419
BseSI GKGCMC 2 cut(s) 260, 325
Bsh1285I CGRYCG 1 cut(s) 384
BshNI GGYRCC 2 cut(s) 197, 257
BshTI ACCGGT 1 cut(s) 182
BshVI ATCGAT 1 cut(s) 384
BsiEI CGRYCG 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 325
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 3 cut(s) 177, 183, 353
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 645
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 2 cut(s) 260, 325
Bsp13I TCCGGA 1 cut(s) 176
Bsp1407I TGTACA 1 cut(s) 73
Bsp143I GATC 3 cut(s) 37, 381, 452
Bsp19I CCATGG 1 cut(s) 652
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 628
BspDI ATCGAT 1 cut(s) 384
BspEI TCCGGA 1 cut(s) 176
BspLI GGNNCC 3 cut(s) 181, 199, 259
BspQI GCTCTTC 1 cut(s) 178
BspT107I GGYRCC 2 cut(s) 197, 257
BsrFI RCCGGY 2 cut(s) 182, 352
BsrGI TGTACA 1 cut(s) 73
BsrI ACTGG 2 cut(s) 232, 419
BssAI RCCGGY 2 cut(s) 182, 352
BssECI CCNNGG 3 cut(s) 316, 437, 652
BssMI GATC 3 cut(s) 37, 381, 452
BssT1I CCWWGG 1 cut(s) 652
Bst2UI CCWGG 2 cut(s) 317, 438
Bst6I CTCTTC 1 cut(s) 178
BstAUI TGTACA 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 220, 636
BstDSI CCRYGG 1 cut(s) 652
BstF5I GGATG 4 cut(s) 99, 154, 280, 648
BstKTI GATC 3 cut(s) 40, 384, 455
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 3 cut(s) 37, 381, 452
BstMCI CGRYCG 1 cut(s) 384
BstMWI GCNNNNNNNGC 1 cut(s) 654
BstNI CCWGG 2 cut(s) 317, 438
BstNSI RCATGY 2 cut(s) 80, 473
BstSCI CCNGG 2 cut(s) 315, 436
BstSLI GKGCMC 2 cut(s) 260, 325
BstV2I GAAGAC 4 cut(s) 11, 250, 396, 545
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
Bsu15I ATCGAT 1 cut(s) 384
BsuTUI ATCGAT 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 652
BtgZI GCGATG 1 cut(s) 411
BtrI CACGTC 1 cut(s) 551
BtsCI GGATG 4 cut(s) 99, 154, 280, 648
BtsI GCAGTG 1 cut(s) 323
BtsIMutI CAGTG 1 cut(s) 323
Cfr10I RCCGGY 2 cut(s) 182, 352
Cfr13I GGNCC 1 cut(s) 377
ClaI ATCGAT 1 cut(s) 384
Csp6I GTAC 3 cut(s) 74, 186, 459
CspAI ACCGGT 1 cut(s) 182
CviAII CATG 3 cut(s) 77, 470, 653
CviJI RGCY 8 cut(s) 5, 89, 122, 340, 356, 450, 602, 657
CviKI_1 RGCY 8 cut(s) 5, 89, 122, 340, 356, 450, 602, 657
CviQI GTAC 3 cut(s) 74, 186, 459
DdeI CTNAG 2 cut(s) 220, 636
DpnI GATC 3 cut(s) 39, 383, 454
DpnII GATC 3 cut(s) 37, 381, 452
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 652
Eco47I GGWCC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 603
EcoRII CCWGG 2 cut(s) 315, 436
EcoT14I CCWWGG 1 cut(s) 652
ErhI CCWWGG 1 cut(s) 652
FaeI CATG 3 cut(s) 80, 473, 656
FaiI YATR 9 cut(s) 72, 78, 111, 125, 251, 389, 471, 479, 654
FatI CATG 3 cut(s) 76, 469, 652
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 4 cut(s) 106, 141, 287, 635
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 2 cut(s) 35, 624
GluI GCNGC 1 cut(s) 87
HapII CCGG 3 cut(s) 177, 183, 353
Hin1II CATG 3 cut(s) 80, 473, 656
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 338
HinfI GANTC 2 cut(s) 575, 638
HpaII CCGG 3 cut(s) 177, 183, 353
Hpy166II GTNNAC 4 cut(s) 216, 323, 412, 629
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 4 cut(s) 177, 542, 572, 605
Hpy8I GTNNAC 4 cut(s) 216, 323, 412, 629
HpyAV CCTTC 2 cut(s) 526, 602
HpyCH4IV ACGT 2 cut(s) 209, 550
HpyCH4V TGCA 2 cut(s) 323, 648
HpyF10VI GCNNNNNNNGC 1 cut(s) 654
HpyF3I CTNAG 2 cut(s) 220, 636
HpySE526I ACGT 2 cut(s) 209, 550
Hsp92II CATG 3 cut(s) 80, 473, 656
Kpn2I TCCGGA 1 cut(s) 176
Kzo9I GATC 3 cut(s) 37, 381, 452
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 441
LweI GCATC 2 cut(s) 265, 439
MaeI CTAG 2 cut(s) 35, 624
MaeII ACGT 2 cut(s) 209, 550
MaeIII GTNAC 1 cut(s) 223
MalI GATC 3 cut(s) 39, 383, 454
MboI GATC 3 cut(s) 37, 381, 452
MboII GAAGA 8 cut(s) 11, 32, 158, 165, 255, 396, 545, 602
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 260, 325
MluCI AATT 2 cut(s) 55, 192
MlyI GAGTC 1 cut(s) 647
MnlI CCTC 1 cut(s) 298
MroI TCCGGA 1 cut(s) 176
MseI TTAA 4 cut(s) 14, 146, 284, 584
MspI CCGG 3 cut(s) 177, 183, 353
MspR9I CCNGG 2 cut(s) 317, 438
MvaI CCWGG 2 cut(s) 317, 438
MwoI GCNNNNNNNGC 1 cut(s) 654
NcoI CCATGG 1 cut(s) 652
NdeII GATC 3 cut(s) 37, 381, 452
NlaIII CATG 3 cut(s) 80, 473, 656
NlaIV GGNNCC 3 cut(s) 181, 199, 259
NspI RCATGY 2 cut(s) 80, 473
PaeR7I CTCGAG 1 cut(s) 603
PciI ACATGT 2 cut(s) 76, 469
PciSI GCTCTTC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 575
PinAI ACCGGT 1 cut(s) 182
PkrI GCNGC 1 cut(s) 88
Ple19I CGATCG 1 cut(s) 384
PleI GAGTC 1 cut(s) 646
PpsI GAGTC 1 cut(s) 646
PscI ACATGT 2 cut(s) 76, 469
Psp6I CCWGG 2 cut(s) 315, 436
PspGI CCWGG 2 cut(s) 315, 436
PspN4I GGNNCC 3 cut(s) 181, 199, 259
PspPI GGNCC 1 cut(s) 377
PsuI RGATCY 1 cut(s) 37
PvuI CGATCG 1 cut(s) 384
RsaI GTAC 3 cut(s) 75, 187, 460
RsaNI GTAC 3 cut(s) 74, 186, 459
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 4 cut(s) 14, 146, 284, 584
SatI GCNGC 1 cut(s) 87
Sau3AI GATC 3 cut(s) 37, 381, 452
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 1 cut(s) 647
ScrFI CCNGG 2 cut(s) 317, 438
SduI GDGCHC 2 cut(s) 260, 325
SfaNI GCATC 2 cut(s) 265, 439
Sfr274I CTCGAG 1 cut(s) 603
SinI GGWCC 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 603
SmlI CTYRAG 1 cut(s) 603
SmoI CTYRAG 1 cut(s) 603
Sse9I AATT 2 cut(s) 55, 192
SsiI CCGC 1 cut(s) 86
SspMI CTAG 2 cut(s) 35, 624
StyD4I CCNGG 2 cut(s) 315, 436
StyI CCWWGG 1 cut(s) 652
TaiI ACGT 2 cut(s) 212, 553
TaqI TCGA 3 cut(s) 348, 384, 604
TaqII GACCGA 1 cut(s) 394
TasI AATT 2 cut(s) 55, 192
TatI WGTACW 1 cut(s) 73
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 575
Tru1I TTAA 4 cut(s) 14, 146, 284, 584
Tru9I TTAA 4 cut(s) 14, 146, 284, 584
TscAI CASTG 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 286
TspGWI ACGGA 3 cut(s) 57, 359, 602
TspRI CASTG 1 cut(s) 330
VneI GTGCAC 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 1 cut(s) 55
XceI RCATGY 2 cut(s) 80, 473
XhoI CTCGAG 1 cut(s) 603
XspI CTAG 2 cut(s) 35, 624
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.