AT2G14247

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0018756
Physical Location & Seq
Forward (+)
6034282 .. 6035375
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G14247.1

Sequence Viewer

Length: 237 bp
ATGGCACCATCCGCTGCAATGCTCATACTCTCACATCCTCTAGTTAGCCACAAAGCTAAGAATCAGTCTCTGTCATCGCCGTCGTCTGTTAAGTCGACACGTGTCTTCGGTTTTCTTTGGCCTTGGAAGGCATTAGACAATGAGGATCATTCCGCGGTTGTTCTCGGCCGGCTCTTTGGCGATCCGGCTACTATCGAGAAGCGCTTCCAAGAAGCTCTTGAACAAAGCTGTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.65

Weight (kDa)

7.96

Isoelectric Point (pI)

74.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018756)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14247 AT4G33666
fragaria_vesca FvH4_2g29390
rosa_chinensis RchiOBHm_Chr6g0298191
rosa_roxburghii Rroxscaffold_7G00169880
rosa_samantha Rh6AG389600 Rh6BG398000 Rh6CG403900 Rh6DG390500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 1 cut(s) 95
AccII CGCG 1 cut(s) 155
AciI CCGC 3 cut(s) 12, 153, 155
AclWI GGATC 2 cut(s) 153, 176
AcoI YGGCCR 1 cut(s) 166
AcvI CACGTG 1 cut(s) 101
AfeI AGCGCT 1 cut(s) 203
AflIII ACRYGT 2 cut(s) 98, 100
AgsI TTSAA 1 cut(s) 221
AluBI AGCT 3 cut(s) 56, 215, 228
AluI AGCT 3 cut(s) 56, 215, 228
Alw26I GTCTC 1 cut(s) 72
AlwI GGATC 2 cut(s) 153, 176
AlwNI CAGNNNCTG 1 cut(s) 70
Aor51HI AGCGCT 1 cut(s) 203
AoxI GGCC 2 cut(s) 119, 166
ApeKI GCWGC 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 204
BanI GGYRCC 1 cut(s) 4
BbrPI CACGTG 1 cut(s) 101
BbsI GAAGAC 1 cut(s) 97
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 205
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 6
BoxI GACNNNNGTC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 122, 153
Bse118I RCCGGY 1 cut(s) 168
Bse3DI GCAATG 1 cut(s) 24
BseDI CCNNGG 2 cut(s) 122, 153
BseGI GGATG 2 cut(s) 8, 34
BseMI GCAATG 1 cut(s) 24
BseX3I CGGCCG 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 155
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 2 cut(s) 121, 168
BshNI GGYRCC 1 cut(s) 4
BsiEI CGRYCG 1 cut(s) 169
BsiSI CCGG 2 cut(s) 169, 185
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 2 cut(s) 121, 168
Bsp143I GATC 2 cut(s) 145, 181
BspACI CCGC 3 cut(s) 12, 153, 155
BspANI GGCC 2 cut(s) 121, 168
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 153, 176
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 168
BssECI CCNNGG 2 cut(s) 122, 153
BssMI GATC 2 cut(s) 145, 181
BssT1I CCWWGG 1 cut(s) 122
BstBAI YACGTR 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 57
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 2 cut(s) 8, 34
BstFNI CGCG 1 cut(s) 155
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 2 cut(s) 148, 184
BstMAI GTCTC 1 cut(s) 72
BstMBI GATC 2 cut(s) 145, 181
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstPAI GACNNNNGTC 1 cut(s) 101
BstUI CGCG 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 97
BstZI CGGCCG 1 cut(s) 166
BsuRI GGCC 2 cut(s) 121, 168
BtgI CCRYGG 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 60
BtsCI GGATG 2 cut(s) 8, 34
Cac8I GCNNGC 1 cut(s) 170
CaiI CAGNNNCTG 1 cut(s) 70
CfoI GCGC 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 168
Cfr42I CCGCGG 1 cut(s) 156
CviJI RGCY 8 cut(s) 48, 56, 121, 168, 172, 188, 215, 228
CviKI_1 RGCY 8 cut(s) 48, 56, 121, 168, 172, 188, 215, 228
DdeI CTNAG 1 cut(s) 57
DpnI GATC 2 cut(s) 147, 183
DpnII GATC 2 cut(s) 145, 181
EaeI YGGCCR 1 cut(s) 166
EagI CGGCCG 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 166
Eco130I CCWWGG 1 cut(s) 122
Eco47III AGCGCT 1 cut(s) 203
Eco52I CGGCCG 1 cut(s) 166
Eco72I CACGTG 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 122
FaiI YATR 1 cut(s) 26
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FblI GTMKAC 1 cut(s) 95
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 203
GluI GCNGC 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 2 cut(s) 121, 168
HapII CCGG 2 cut(s) 169, 185
HhaI GCGC 1 cut(s) 204
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 1 cut(s) 61
HpaII CCGG 2 cut(s) 169, 185
Hpy166II GTNNAC 1 cut(s) 96
Hpy188III TCNNGA 2 cut(s) 196, 218
Hpy8I GTNNAC 1 cut(s) 96
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 100
HpyCH4V TGCA 1 cut(s) 17
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 57
HpySE526I ACGT 1 cut(s) 100
HspAI GCGC 1 cut(s) 202
KroI GCCGGC 1 cut(s) 168
KroNI GCCGGC 1 cut(s) 170
KspI CCGCGG 1 cut(s) 156
Kzo9I GATC 2 cut(s) 145, 181
LpnPI CCDG 2 cut(s) 182, 198
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 100
MalI GATC 2 cut(s) 147, 183
MboI GATC 2 cut(s) 145, 181
MboII GAAGA 1 cut(s) 97
MnlI CCTC 2 cut(s) 48, 136
MroNI GCCGGC 1 cut(s) 168
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 90
MspA1I CMGCKG 2 cut(s) 14, 155
MspI CCGG 2 cut(s) 169, 185
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 11
NaeI GCCGGC 1 cut(s) 170
NdeII GATC 2 cut(s) 145, 181
NgoMIV GCCGGC 1 cut(s) 168
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 16
PmaCI CACGTG 1 cut(s) 101
PmlI CACGTG 1 cut(s) 101
Ppu21I YACGTR 1 cut(s) 101
PshAI GACNNNNGTC 1 cut(s) 101
PspCI CACGTG 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 70
SacII CCGCGG 1 cut(s) 156
SalI GTCGAC 1 cut(s) 94
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 145, 181
SetI ASST 4 cut(s) 58, 103, 217, 230
Sfr303I CCGCGG 1 cut(s) 156
SgrBI CCGCGG 1 cut(s) 156
SsiI CCGC 3 cut(s) 12, 153, 155
SspMI CTAG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 122
TaiI ACGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 95, 195
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 95
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.