Rh6AG389600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018756
Physical Location & Seq
Reverse (-)
58835687 .. 58836285
599 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG389600.1

Sequence Viewer

Length: 273 bp
ATGGCACCTACAGCAGCAATGCTCCTTCTCTCTGATCACCCTCACTCTCACCACATCAAATCAAATTACCCACCACCATCTTTTGATTCTCATCTTGCTCCATTGCCACCACCTGTAACTAGCTTTCTGGGAACCAGTATCGTCTGCAAAGCAAGAGCAGATTCTGATCACCATGACCGGGATGAGAAGTGCTTGGTTAGTGGTGAAGCGTCTGAATCTGAGGCATTAATGGAAAAGAGGTTTGAAGAAGCGCTTCGACTCAGCTGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

9.95

Weight (kDa)

5.71

Isoelectric Point (pI)

59.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018756)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14247 AT4G33666
fragaria_vesca FvH4_2g29390
rosa_chinensis RchiOBHm_Chr6g0298191
rosa_roxburghii Rroxscaffold_7G00169880
rosa_samantha Rh6AG389600 Rh6BG398000 Rh6CG403900 Rh6DG390500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AfeI AGCGCT 1 cut(s) 252
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 2 cut(s) 123, 264
AluI AGCT 2 cut(s) 123, 264
AlwNI CAGNNNCTG 1 cut(s) 164
Aor51HI AGCGCT 1 cut(s) 252
ApeKI GCWGC 1 cut(s) 14
AseI ATTAAT 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 252
AspLEI GCGC 1 cut(s) 253
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 4 cut(s) 29, 41, 161, 215
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 85
BclI TGATCA 2 cut(s) 34, 166
BcnI CCSGG 1 cut(s) 179
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 254
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 179
BmiI GGNNCC 2 cut(s) 6, 133
BmrFI CCNGG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 179
BsaBI GATNNNNATC 2 cut(s) 90, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 135
Bse3DI GCAATG 2 cut(s) 24, 101
Bse8I GATNNNNATC 2 cut(s) 90, 165
BseGI GGATG 1 cut(s) 187
BseJI GATNNNNATC 2 cut(s) 90, 165
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMI GCAATG 2 cut(s) 24, 101
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 178
BslI CCNNNNNNNGG 1 cut(s) 178
Bsp143I GATC 2 cut(s) 34, 166
BspCNI CTCAG 2 cut(s) 211, 273
BspLI GGNNCC 2 cut(s) 6, 133
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 2 cut(s) 24, 101
BsrI ACTGG 1 cut(s) 135
BssMI GATC 2 cut(s) 34, 166
BstDEI CTNAG 2 cut(s) 219, 260
BstF5I GGATG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 2 cut(s) 37, 169
BstMBI GATC 2 cut(s) 34, 166
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 164
CfoI GCGC 1 cut(s) 253
CseI GACGC 1 cut(s) 198
CviAII CATG 1 cut(s) 173
CviJI RGCY 2 cut(s) 123, 264
CviKI_1 RGCY 2 cut(s) 123, 264
DdeI CTNAG 2 cut(s) 219, 260
DpnI GATC 2 cut(s) 36, 168
DpnII GATC 2 cut(s) 34, 166
Eco47III AGCGCT 1 cut(s) 252
FaeI CATG 1 cut(s) 176
FaiI YATR 1 cut(s) 174
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FatI CATG 1 cut(s) 172
FbaI TGATCA 2 cut(s) 34, 166
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 254
HapII CCGG 1 cut(s) 178
HgaI GACGC 1 cut(s) 198
HhaI GCGC 1 cut(s) 253
Hin1II CATG 1 cut(s) 176
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 4 cut(s) 86, 161, 215, 258
HpaII CCGG 1 cut(s) 178
HphI GGTGA 4 cut(s) 29, 41, 161, 215
Hpy188I TCNGA 4 cut(s) 34, 166, 214, 220
HpyAV CCTTC 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 219, 260
Hsp92II CATG 1 cut(s) 176
HspAI GCGC 1 cut(s) 251
Ksp22I TGATCA 2 cut(s) 34, 166
Kzo9I GATC 2 cut(s) 34, 166
LmnI GCTCC 2 cut(s) 27, 103
LpnPI CCDG 4 cut(s) 113, 126, 148, 191
Lsp1109I GCAGC 1 cut(s) 26
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 36, 168
MboI GATC 2 cut(s) 34, 166
MboII GAAGA 1 cut(s) 257
MluCI AATT 1 cut(s) 64
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 3 cut(s) 51, 214, 231
MroXI GAANNNNTTC 1 cut(s) 252
MseI TTAA 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 264
MspI CCGG 1 cut(s) 178
MspR9I CCNGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 179
NdeII GATC 2 cut(s) 34, 166
NlaIII CATG 1 cut(s) 176
NlaIV GGNNCC 2 cut(s) 6, 133
PdmI GAANNNNTTC 1 cut(s) 252
PfeI GAWTC 3 cut(s) 86, 161, 215
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PshBI ATTAAT 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 6, 133
PstNI CAGNNNCTG 1 cut(s) 164
PvuII CAGCTG 1 cut(s) 264
SaqAI TTAA 1 cut(s) 227
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 2 cut(s) 34, 166
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 1 cut(s) 179
SetI ASST 5 cut(s) 10, 115, 125, 242, 266
SfcI CTRYAG 1 cut(s) 9
Sse9I AATT 1 cut(s) 64
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 177
TaqI TCGA 1 cut(s) 256
TasI AATT 1 cut(s) 64
TfiI GAWTC 3 cut(s) 86, 161, 215
Tru1I TTAA 1 cut(s) 227
Tru9I TTAA 1 cut(s) 227
TseI GCWGC 1 cut(s) 14
VspI ATTAAT 1 cut(s) 227
XmnI GAANNNNTTC 1 cut(s) 252
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.