FvH4_2g29390

synthase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0018756
Physical Location & Seq
Reverse (-)
22806644 .. 22807497
854 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29390.t1

Sequence Viewer

Length: 294 bp
ATGGCACCTACAGCAGCAATGCTCCTTCTCTCTGATCACCCTCACTCTCATCACCACCTCAAACCATCTTTTGATTCTGATCTTCCTCCATTGCCACCACCTGTAACTAGCTTTCTGGGTGTTCAAGTCTCGCCGCTGAAGTGGGTTTCCAGACTGAGAACCGGTATCGTCTGCAAAGCAAGAGCAGATTCTGATTACCATGGCCGGGATGGGAGGTGCATGGTTAATGATGAAACGTCTGAGGCATTGATGGAAAAGAGGTTTGAAGAAGCGCTTCGACTCAGCTGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

98

Amino Acids

10.89

Weight (kDa)

6.57

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018756)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14247 AT4G33666
fragaria_vesca FvH4_2g29390
rosa_chinensis RchiOBHm_Chr6g0298191
rosa_roxburghii Rroxscaffold_7G00169880
rosa_samantha Rh6AG389600 Rh6BG398000 Rh6CG403900 Rh6DG390500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 134
AcoI YGGCCR 1 cut(s) 202
AcuI CTGAAG 1 cut(s) 158
AfeI AGCGCT 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 205
AgeI ACCGGT 1 cut(s) 161
AgsI TTSAA 2 cut(s) 125, 266
AluBI AGCT 2 cut(s) 111, 285
AluI AGCT 2 cut(s) 111, 285
Alw26I GTCTC 1 cut(s) 133
AlwNI CAGNNNCTG 1 cut(s) 191
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 14
AsiGI ACCGGT 1 cut(s) 161
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 274
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 29, 44
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 26
BccI CCATC 3 cut(s) 73, 203, 244
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 108
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 275
BisI GCNGC 2 cut(s) 15, 134
BlsI GCNGC 2 cut(s) 16, 135
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 161
Bse3DI GCAATG 2 cut(s) 24, 89
Bse8I GATNNNNATC 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 1 cut(s) 214
BseJI GATNNNNATC 1 cut(s) 78
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMI GCAATG 2 cut(s) 24, 89
BseMII CTCAG 2 cut(s) 146, 231
BseXI GCAGC 1 cut(s) 26
BshFI GGCC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 161
BsiSI CCGG 2 cut(s) 162, 205
BslI CCNNNNNNNGG 1 cut(s) 205
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 204
Bsp143I GATC 2 cut(s) 34, 79
Bsp19I CCATGG 1 cut(s) 199
BspACI CCGC 1 cut(s) 134
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 3 cut(s) 147, 232, 294
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 2 cut(s) 24, 89
BsrFI RCCGGY 1 cut(s) 161
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 2 cut(s) 34, 79
BssT1I CCWWGG 1 cut(s) 199
BstDEI CTNAG 3 cut(s) 155, 240, 281
BstDSI CCRYGG 1 cut(s) 199
BstF5I GGATG 1 cut(s) 214
BstH2I RGCGCY 1 cut(s) 275
BstHHI GCGC 1 cut(s) 274
BstKTI GATC 2 cut(s) 37, 82
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 34, 79
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 204
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 26
BsuRI GGCC 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 199
BtsCI GGATG 1 cut(s) 214
CaiI CAGNNNCTG 1 cut(s) 191
CfoI GCGC 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 161
CspAI ACCGGT 1 cut(s) 161
CviAII CATG 2 cut(s) 200, 220
CviJI RGCY 3 cut(s) 111, 204, 285
CviKI_1 RGCY 3 cut(s) 111, 204, 285
DdeI CTNAG 3 cut(s) 155, 240, 281
DpnI GATC 2 cut(s) 36, 81
DpnII GATC 2 cut(s) 34, 79
EaeI YGGCCR 1 cut(s) 202
Eco130I CCWWGG 1 cut(s) 199
Eco47III AGCGCT 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 2 cut(s) 203, 223
FaiI YATR 2 cut(s) 201, 221
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FatI CATG 2 cut(s) 199, 219
FbaI TGATCA 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 15, 134
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 15, 134
FspBI CTAG 1 cut(s) 108
GlaI GCGC 1 cut(s) 273
GluI GCNGC 2 cut(s) 15, 134
HaeII RGCGCY 1 cut(s) 275
HaeIII GGCC 1 cut(s) 204
HapII CCGG 2 cut(s) 162, 205
HhaI GCGC 1 cut(s) 274
Hin1II CATG 2 cut(s) 203, 223
Hin6I GCGC 1 cut(s) 272
HinP1I GCGC 1 cut(s) 272
HinfI GANTC 3 cut(s) 74, 188, 279
HpaII CCGG 2 cut(s) 162, 205
HphI GGTGA 2 cut(s) 29, 44
Hpy188I TCNGA 4 cut(s) 34, 79, 193, 241
Hpy188III TCNNGA 1 cut(s) 150
HpyAV CCTTC 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 236
HpyCH4V TGCA 2 cut(s) 174, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 3 cut(s) 155, 240, 281
HpySE526I ACGT 1 cut(s) 236
Hsp92II CATG 2 cut(s) 203, 223
HspAI GCGC 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 34, 79
LmnI GCTCC 1 cut(s) 27
LpnPI CCDG 5 cut(s) 101, 114, 163, 175, 218
Lsp1109I GCAGC 1 cut(s) 26
MaeI CTAG 1 cut(s) 108
MaeII ACGT 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 36, 81
MboI GATC 2 cut(s) 34, 79
MboII GAAGA 2 cut(s) 74, 278
MlyI GAGTC 1 cut(s) 273
MnlI CCTC 6 cut(s) 51, 68, 96, 207, 235, 252
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 1 cut(s) 225
MspA1I CMGCKG 2 cut(s) 136, 285
MspI CCGG 2 cut(s) 162, 205
MspR9I CCNGG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 206
NcoI CCATGG 1 cut(s) 199
NdeII GATC 2 cut(s) 34, 79
NlaIII CATG 2 cut(s) 203, 223
NlaIV GGNNCC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 2 cut(s) 74, 188
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 2 cut(s) 16, 135
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 285
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 15, 134
Sau3AI GATC 2 cut(s) 34, 79
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 206
SetI ASST 8 cut(s) 10, 60, 103, 113, 218, 239, 263, 287
SfcI CTRYAG 1 cut(s) 9
SsiI CCGC 1 cut(s) 134
SspMI CTAG 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 204
StyI CCWWGG 1 cut(s) 199
TaiI ACGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 277
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 2 cut(s) 74, 188
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 1 cut(s) 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.