Rroxscaffold_7G00169880

synthase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018756
Physical Location & Seq
Forward (+)
10376029 .. 10376334
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00169880.1

Sequence Viewer

Length: 306 bp
ATGGCACCTACAGCAGCAATGCTCCTTCTCTCTGATCACCCTCACTCTCACCACCTCAAACCAAATTACCCACCACCATCTTTTGATTCTCATCTTGCTCCATTGCCACCACCTGTAACTAGCTTTCTGGGCGTTCAAGTCTCGCCGCTGAAATGGGTTTCGGGACTGAGAACCAGTATCGTCTGCAAAGCAAGAGCAGATTCTGATCACCATGACCGGGATGAGAAGTGCTTGGTTAGTGGTGAAGCGTCTGAGGCATTATTGGAAAAGAGGTTTGAAGAAGCGCTTCGACTCAGCTGTTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NmrA

Protein Analysis

101

Amino Acids

11.18

Weight (kDa)

6.35

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018756)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14247 AT4G33666
fragaria_vesca FvH4_2g29390
rosa_chinensis RchiOBHm_Chr6g0298191
rosa_roxburghii Rroxscaffold_7G00169880
rosa_samantha Rh6AG389600 Rh6BG398000 Rh6CG403900 Rh6DG390500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AciI CCGC 1 cut(s) 146
AfeI AGCGCT 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 217
AgsI TTSAA 2 cut(s) 137, 278
AluBI AGCT 2 cut(s) 123, 297
AluI AGCT 2 cut(s) 123, 297
Alw26I GTCTC 1 cut(s) 145
AlwNI CAGNNNCTG 1 cut(s) 203
Aor51HI AGCGCT 1 cut(s) 285
ApeKI GCWGC 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 1 cut(s) 286
AsuC2I CCSGG 1 cut(s) 218
AsuHPI GGTGA 4 cut(s) 29, 41, 200, 254
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 1 cut(s) 26
BccI CCATC 1 cut(s) 85
BclI TGATCA 2 cut(s) 34, 205
BcnI CCSGG 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 1 cut(s) 287
BisI GCNGC 2 cut(s) 15, 146
BlsI GCNGC 2 cut(s) 16, 147
Bme1390I CCNGG 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 218
BsaBI GATNNNNATC 2 cut(s) 90, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 217
Bse1I ACTGG 1 cut(s) 174
Bse3DI GCAATG 2 cut(s) 24, 101
Bse8I GATNNNNATC 2 cut(s) 90, 204
BseGI GGATG 1 cut(s) 226
BseJI GATNNNNATC 2 cut(s) 90, 204
BseLI CCNNNNNNNGG 1 cut(s) 217
BseMI GCAATG 2 cut(s) 24, 101
BseMII CTCAG 2 cut(s) 158, 243
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 26
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 1 cut(s) 177
BslI CCNNNNNNNGG 1 cut(s) 217
BsmAI GTCTC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 177
Bsp143I GATC 2 cut(s) 34, 205
BspACI CCGC 1 cut(s) 146
BspCNI CTCAG 3 cut(s) 159, 244, 306
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 2 cut(s) 24, 101
BsrI ACTGG 1 cut(s) 174
BssMI GATC 2 cut(s) 34, 205
BstDEI CTNAG 3 cut(s) 167, 252, 293
BstF5I GGATG 1 cut(s) 226
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 2 cut(s) 37, 208
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 2 cut(s) 34, 205
BstMWI GCNNNNNNNGC 3 cut(s) 11, 129, 254
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 226
CaiI CAGNNNCTG 1 cut(s) 203
CfoI GCGC 1 cut(s) 286
CseI GACGC 1 cut(s) 237
CviAII CATG 1 cut(s) 212
CviJI RGCY 2 cut(s) 123, 297
CviKI_1 RGCY 2 cut(s) 123, 297
DdeI CTNAG 3 cut(s) 167, 252, 293
DpnI GATC 2 cut(s) 36, 207
DpnII GATC 2 cut(s) 34, 205
Eco47III AGCGCT 1 cut(s) 285
FaeI CATG 1 cut(s) 215
FaiI YATR 1 cut(s) 213
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FaqI GGGAC 1 cut(s) 177
FatI CATG 1 cut(s) 211
FbaI TGATCA 2 cut(s) 34, 205
Fnu4HI GCNGC 2 cut(s) 15, 146
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 15, 146
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 285
GluI GCNGC 2 cut(s) 15, 146
HaeII RGCGCY 1 cut(s) 287
HapII CCGG 1 cut(s) 217
HgaI GACGC 1 cut(s) 237
HhaI GCGC 1 cut(s) 286
Hin1II CATG 1 cut(s) 215
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 3 cut(s) 86, 200, 291
HpaII CCGG 1 cut(s) 217
HphI GGTGA 4 cut(s) 29, 41, 200, 254
Hpy188I TCNGA 3 cut(s) 34, 205, 253
Hpy188III TCNNGA 1 cut(s) 162
HpyAV CCTTC 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 129, 254
HpyF3I CTNAG 3 cut(s) 167, 252, 293
Hsp92II CATG 1 cut(s) 215
HspAI GCGC 1 cut(s) 284
Ksp22I TGATCA 2 cut(s) 34, 205
Kzo9I GATC 2 cut(s) 34, 205
LmnI GCTCC 2 cut(s) 27, 103
LpnPI CCDG 4 cut(s) 113, 126, 187, 230
Lsp1109I GCAGC 1 cut(s) 26
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 115
MalI GATC 2 cut(s) 36, 207
MboI GATC 2 cut(s) 34, 205
MboII GAAGA 1 cut(s) 290
MluCI AATT 1 cut(s) 64
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 4 cut(s) 51, 65, 247, 264
MroXI GAANNNNTTC 1 cut(s) 285
MspA1I CMGCKG 2 cut(s) 148, 297
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 218
MwoI GCNNNNNNNGC 3 cut(s) 11, 129, 254
NciI CCSGG 1 cut(s) 218
NdeII GATC 2 cut(s) 34, 205
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 285
PfeI GAWTC 2 cut(s) 86, 200
PkrI GCNGC 2 cut(s) 16, 147
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 297
SatI GCNGC 2 cut(s) 15, 146
Sau3AI GATC 2 cut(s) 34, 205
SchI GAGTC 1 cut(s) 285
ScrFI CCNGG 1 cut(s) 218
SetI ASST 6 cut(s) 10, 57, 115, 125, 275, 299
SfcI CTRYAG 1 cut(s) 9
Sse9I AATT 1 cut(s) 64
SsiI CCGC 1 cut(s) 146
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 216
TaqI TCGA 1 cut(s) 289
TasI AATT 1 cut(s) 64
TauI GCSGC 1 cut(s) 148
TfiI GAWTC 2 cut(s) 86, 200
TseI GCWGC 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.