AT2G16230

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
7035378 .. 7038395
3018 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G16230.1

Sequence Viewer

Length: 1512 bp
ATGGCTCTCTCCATCCTCTTCCTTCTCCTCTTCATTCTCTTCTCTATTTCGCCGTCAAATGCACAGTCGTTTATCGGAGTAAACTACGGCTTACTATCCGACAACCTCCCGCCACCTTCTCAAACGGCCAAACTCCTCCAATCTACCTCCATCCAGAAAGTGAGGCTATACAATGCGGATTCCTCCATCATCACATCCTTGGTTGGAACCGGTATTGGTATTGTTATCGGAGTAGCAAATGGCGATCTCCCGTCTATCGCCTCGGATCTCAACATTGCCTCTCAGTGGATAAATTCCAACGTACTTCCTTTCTATCCTGCCTCCAACATCATTCTCATCAATGTCGGCAACGAGGTGTTGTTGTCAAATGATCTGAATCTTGTAAACCAACTTCTCCCGGCTATGCAAAATGTTCAAAAGGCTCTCGAGGCGGTTTCACTAGGTGGAAAAATCAAGGTGTCTACTGTCCATGCAATGACAGTACTAGGCAACTCCGAACCGCCATCAGCTGGTTCGTTTGCTCCTAGTTATCAGGCCGGTTTAAAGGGCATTCTACAGTTTCTTAGCGATACCGGGTCGCCTTTTGCCATCAACCCGTACCCGTTCTTTGCATATCAGAGCGACCCGAGACCCGAAACGCTGGCGTTTTGTCTTTTCCAGCCTAACCCTGGACGGGTAGACTCAAACACTGGAATCAAGTACATGAACATGTTTGATGCTCAGGTTGATGCAGTGCACTCAGCTTTGAAATCGATAGGATTCGAGAAAGTGGAAGTGTTGGTGGCCGAAACTGGTTGGCCATCAACCGGTGACAGCAACGAGGTAGGTCCGAGTGTTGAGAATGCTAAAGCTTACAACGGAAATCTCATTGCTCACTTAAGGTCCATGGTTGGGACTCCGCTCATGCCCGGAAAATCCATCGACACTTACATTTTCGCTCTCTTTGACGAGAATCTCAAGCCTGGTCCTTCTTTTGAGCAATCTTTTGGCCTTTTCAAGCCTGATCTTTCCATGGCCTACGACATTGGACTCACTAAAACTACTAGTAGCCAGACGTCACAATCTCCACAGTTGGGAAAAGTAACATCAATGGGATGGTGTGTGCCAAAGGAGGATGCAACTCAAGAGCAGTTGCAAGATAGTCTAGATTGGGTTTGTGGGCAGGGAATTGATTGTGGCCCAATAATGCCAGGAGGAGTTTGTTTCGAGCCTAACAATGTCGCCTCTCATACAGCCTATGCCATGAATCTTTATTTCCAAAAATCTCCTGAAAACCCTACGGATTGCGATTTCTCTAAAACCGCCAGGATCACTTCTGAGAACCCTAGTTATAGCAGTTGTGTCTACCCTAGAGCAGGAGATGGAAGCATAACAGGAGAGGTGACTAAATATGTGACTTCAGACAAAGCAACGGAGAAGAATGGATCAGAATGCTTCTCTTCTCTGTATTTGGCTCGCTTTATCATCTCTATTTATTTCTTCTGTCTTTTCCCCTCTTTGCGAATTATGTAG

Protein Analysis

503

Amino Acids

54.15

Weight (kDa)

4.81

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 25 - 342 1.6e-81 Glycosyl hydrolases family 17
X8 PF07983 366 - 435 2.7e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1058
AccB7I CCANNNNNTGG 1 cut(s) 509
AccBSI CCGCTC 1 cut(s) 901
AccI GTMKAC 3 cut(s) 461, 678, 1344
AciI CCGC 6 cut(s) 110, 176, 431, 500, 899, 1302
AclWI GGATC 3 cut(s) 273, 1316, 1432
AcoI YGGCCR 3 cut(s) 126, 783, 797
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 1383
AcyI GRCGYC 1 cut(s) 1055
AdeI CACNNNGTG 1 cut(s) 443
AfaI GTAC 4 cut(s) 303, 483, 599, 701
AfiI CCNNNNNNNGG 8 cut(s) 285, 509, 668, 673, 806, 891, 1073, 1355
AflII CTTAAG 1 cut(s) 877
AflIII ACRYGT 1 cut(s) 708
AgeI ACCGGT 2 cut(s) 209, 806
AgsI TTSAA 3 cut(s) 416, 748, 997
AhlI ACTAGT 1 cut(s) 1043
AjnI CCWGG 4 cut(s) 667, 961, 1189, 1304
AluBI AGCT 3 cut(s) 509, 743, 851
AluI AGCT 3 cut(s) 509, 743, 851
Alw21I GWGCWC 1 cut(s) 738
Alw26I GTCTC 1 cut(s) 622
Alw44I GTGCAC 1 cut(s) 734
AlwI GGATC 3 cut(s) 273, 1316, 1432
Ama87I CYCGRG 2 cut(s) 425, 625
AoxI GGCC 7 cut(s) 126, 534, 783, 797, 988, 1014, 1177
ApaLI GTGCAC 1 cut(s) 734
ApoI RAATTY 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 50, 82
AsiGI ACCGGT 2 cut(s) 209, 806
AspS9I GGNCC 4 cut(s) 827, 882, 965, 1178
AsuC2I CCSGG 3 cut(s) 398, 574, 909
AsuHPI GGTGA 2 cut(s) 821, 1393
AvaI CYCGRG 2 cut(s) 425, 625
AvaII GGWCC 3 cut(s) 827, 882, 965
BaeGI GKGCMC 1 cut(s) 738
BalI TGGCCA 1 cut(s) 799
BarI GAAGNNNNNNTAC 2 cut(s) 375, 407
Bbv12I GWGCWC 1 cut(s) 738
BccI CCATC 9 cut(s) 20, 158, 194, 511, 596, 808, 926, 1089, 1355
BceAI ACGGC 3 cut(s) 37, 103, 141
BciT130I CCWGG 4 cut(s) 669, 963, 1191, 1306
BcnI CCSGG 3 cut(s) 398, 574, 909
BcoDI GTCTC 1 cut(s) 622
BcuI ACTAGT 1 cut(s) 1043
BfaI CTAG 7 cut(s) 440, 485, 525, 1044, 1145, 1326, 1350
BfmI CTRYAG 1 cut(s) 554
BfrI CTTAAG 1 cut(s) 877
BmcAI AGTACT 1 cut(s) 483
Bme1390I CCNGG 7 cut(s) 398, 574, 669, 909, 963, 1191, 1306
Bme18I GGWCC 3 cut(s) 827, 882, 965
BmeT110I CYCGRG 2 cut(s) 425, 625
BmgT120I GGNCC 4 cut(s) 827, 882, 965, 1178
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 7 cut(s) 398, 574, 669, 909, 963, 1191, 1306
BmsI GCATC 3 cut(s) 706, 718, 1105
Bpu10I CCTNAGC 1 cut(s) 720
BpuEI CTTGAG 2 cut(s) 941, 1107
BpuMI CCSGG 3 cut(s) 398, 574, 909
Bsa29I ATCGAT 1 cut(s) 752
BsaBI GATNNNNATC 1 cut(s) 375
BsaHI GRCGYC 1 cut(s) 1055
BsaI GGTCTC 1 cut(s) 622
BsaJI CCNNGG 5 cut(s) 198, 261, 667, 885, 1011
BsaWI WCCGGW 2 cut(s) 209, 806
Bsc4I CCNNNNNNNGG 8 cut(s) 285, 509, 668, 673, 806, 891, 1073, 1355
Bse118I RCCGGY 3 cut(s) 209, 536, 806
Bse1I ACTGG 2 cut(s) 694, 796
Bse3DI GCAATG 3 cut(s) 273, 480, 867
Bse8I GATNNNNATC 1 cut(s) 375
BseBI CCWGG 4 cut(s) 669, 963, 1191, 1306
BseCI ATCGAT 1 cut(s) 752
BseDI CCNNGG 5 cut(s) 198, 261, 667, 885, 1011
BseGI GGATG 5 cut(s) 12, 150, 194, 1100, 1120
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 8 cut(s) 285, 509, 668, 673, 806, 891, 1073, 1355
BseMI GCAATG 3 cut(s) 273, 480, 867
BseMII CTCAG 4 cut(s) 296, 734, 753, 1308
BseNI ACTGG 2 cut(s) 694, 796
BseRI GAGGAG 3 cut(s) 17, 125, 1209
BseSI GKGCMC 1 cut(s) 738
BshFI GGCC 7 cut(s) 128, 536, 785, 799, 990, 1016, 1179
BshTI ACCGGT 2 cut(s) 209, 806
BshVI ATCGAT 1 cut(s) 752
BsiHKAI GWGCWC 1 cut(s) 738
BsiHKCI CYCGRG 2 cut(s) 425, 625
BsiSI CCGG 6 cut(s) 210, 398, 537, 573, 807, 909
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 8 cut(s) 285, 509, 668, 673, 806, 891, 1073, 1355
BsmAI GTCTC 1 cut(s) 622
BsmFI GGGAC 1 cut(s) 907
BsmI GAATGC 3 cut(s) 549, 847, 1436
BsnI GGCC 7 cut(s) 128, 536, 785, 799, 990, 1016, 1179
Bso31I GGTCTC 1 cut(s) 622
BsoBI CYCGRG 2 cut(s) 425, 625
Bsp1286I GDGCHC 1 cut(s) 738
Bsp143I GATC 6 cut(s) 244, 265, 370, 1003, 1308, 1424
Bsp19I CCATGG 2 cut(s) 885, 1011
BspACI CCGC 6 cut(s) 110, 176, 431, 500, 899, 1302
BspANI GGCC 7 cut(s) 128, 536, 785, 799, 990, 1016, 1179
BspCNI CTCAG 4 cut(s) 295, 733, 752, 1309
BspDI ATCGAT 1 cut(s) 752
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 3 cut(s) 273, 1316, 1432
BspTI CTTAAG 1 cut(s) 877
BspTNI GGTCTC 1 cut(s) 622
BsrBI CCGCTC 1 cut(s) 901
BsrDI GCAATG 3 cut(s) 273, 480, 867
BsrFI RCCGGY 3 cut(s) 209, 536, 806
BsrI ACTGG 2 cut(s) 694, 796
BssAI RCCGGY 3 cut(s) 209, 536, 806
BssECI CCNNGG 5 cut(s) 198, 261, 667, 885, 1011
BssMI GATC 6 cut(s) 244, 265, 370, 1003, 1308, 1424
BssNI GRCGYC 1 cut(s) 1055
BssT1I CCWWGG 3 cut(s) 198, 885, 1011
Bst2UI CCWGG 4 cut(s) 669, 963, 1191, 1306
Bst4CI ACNGT 5 cut(s) 66, 466, 481, 558, 1071
Bst6I CTCTTC 4 cut(s) 23, 35, 44, 1444
BstACI GRCGYC 1 cut(s) 1055
BstAFI CTTAAG 1 cut(s) 877
BstC8I GCNNGC 2 cut(s) 642, 1456
BstDEI CTNAG 5 cut(s) 282, 563, 720, 739, 1317
BstDSI CCRYGG 2 cut(s) 885, 1011
BstENI CCTNNNNNAGG 1 cut(s) 1353
BstF5I GGATG 5 cut(s) 12, 150, 194, 1100, 1120
BstKTI GATC 6 cut(s) 247, 268, 373, 1006, 1311, 1427
BstMAI GTCTC 1 cut(s) 622
BstMBI GATC 6 cut(s) 244, 265, 370, 1003, 1308, 1424
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 4 cut(s) 669, 963, 1191, 1306
BstNSI RCATGY 1 cut(s) 712
BstSCI CCNGG 7 cut(s) 396, 572, 667, 907, 961, 1189, 1304
BstSFI CTRYAG 1 cut(s) 554
BstSLI GKGCMC 1 cut(s) 738
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
Bsu15I ATCGAT 1 cut(s) 752
BsuRI GGCC 7 cut(s) 128, 536, 785, 799, 990, 1016, 1179
BsuTUI ATCGAT 1 cut(s) 752
BtgI CCRYGG 2 cut(s) 885, 1011
BtsCI GGATG 5 cut(s) 12, 150, 194, 1100, 1120
BtsI GCAGTG 1 cut(s) 738
BtsIMutI CAGTG 3 cut(s) 290, 687, 738
Cac8I GCNNGC 2 cut(s) 642, 1456
Cfr10I RCCGGY 3 cut(s) 209, 536, 806
Cfr13I GGNCC 4 cut(s) 827, 882, 965, 1178
ClaI ATCGAT 1 cut(s) 752
Csp6I GTAC 4 cut(s) 302, 482, 598, 700
CspAI ACCGGT 2 cut(s) 209, 806
CviAII CATG 7 cut(s) 470, 703, 709, 886, 904, 1012, 1243
CviQI GTAC 4 cut(s) 302, 482, 598, 700
DdeI CTNAG 5 cut(s) 282, 563, 720, 739, 1317
DpnI GATC 6 cut(s) 246, 267, 372, 1005, 1310, 1426
DpnII GATC 6 cut(s) 244, 265, 370, 1003, 1308, 1424
DraI TTTAAA 1 cut(s) 543
DraIII CACNNNGTG 1 cut(s) 443
EaeI YGGCCR 3 cut(s) 126, 783, 797
Eam1104I CTCTTC 4 cut(s) 23, 35, 44, 1444
EarI CTCTTC 4 cut(s) 23, 35, 44, 1444
Eco130I CCWWGG 3 cut(s) 198, 885, 1011
Eco31I GGTCTC 1 cut(s) 622
Eco47I GGWCC 3 cut(s) 827, 882, 965
Eco57I CTGAAG 1 cut(s) 1383
Eco88I CYCGRG 2 cut(s) 425, 625
EcoNI CCTNNNNNAGG 1 cut(s) 1353
EcoRII CCWGG 4 cut(s) 667, 961, 1189, 1304
EcoT14I CCWWGG 3 cut(s) 198, 885, 1011
ErhI CCWWGG 3 cut(s) 198, 885, 1011
FaeI CATG 7 cut(s) 473, 706, 712, 889, 907, 1015, 1246
FaqI GGGAC 1 cut(s) 907
FatI CATG 7 cut(s) 469, 702, 708, 885, 903, 1011, 1242
FauI CCCGC 1 cut(s) 117
FblI GTMKAC 3 cut(s) 461, 678, 1344
FokI GGATG 4 cut(s) 137, 181, 1107, 1127
FspBI CTAG 7 cut(s) 440, 485, 525, 1044, 1145, 1326, 1350
HaeIII GGCC 7 cut(s) 128, 536, 785, 799, 990, 1016, 1179
HapII CCGG 6 cut(s) 210, 398, 537, 573, 807, 909
Hin1I GRCGYC 1 cut(s) 1055
Hin1II CATG 7 cut(s) 473, 706, 712, 889, 907, 1015, 1246
HindIII AAGCTT 1 cut(s) 849
HinfI GANTC 9 cut(s) 179, 376, 680, 693, 759, 895, 952, 1029, 1246
HpaII CCGG 6 cut(s) 210, 398, 537, 573, 807, 909
HphI GGTGA 2 cut(s) 821, 1393
Hpy166II GTNNAC 6 cut(s) 82, 385, 462, 679, 736, 1345
Hpy188III TCNNGA 6 cut(s) 154, 425, 763, 1124, 1145, 1268
Hpy8I GTNNAC 6 cut(s) 82, 385, 462, 679, 736, 1345
HpyAV CCTTC 3 cut(s) 32, 126, 978
HpyCH4III ACNGT 5 cut(s) 66, 466, 481, 558, 1071
HpyCH4IV ACGT 2 cut(s) 300, 1055
HpyCH4V TGCA 8 cut(s) 62, 406, 473, 611, 731, 736, 1118, 1135
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 5 cut(s) 282, 563, 720, 739, 1317
HpySE526I ACGT 2 cut(s) 300, 1055
Hsp92I GRCGYC 1 cut(s) 1055
Hsp92II CATG 7 cut(s) 473, 706, 712, 889, 907, 1015, 1246
Kzo9I GATC 6 cut(s) 244, 265, 370, 1003, 1308, 1424
LmnI GCTCC 1 cut(s) 526
LweI GCATC 3 cut(s) 706, 718, 1105
MaeI CTAG 7 cut(s) 440, 485, 525, 1044, 1145, 1326, 1350
MaeII ACGT 2 cut(s) 300, 1055
MaeIII GTNAC 5 cut(s) 809, 1056, 1081, 1381, 1393
MalI GATC 6 cut(s) 246, 267, 372, 1005, 1310, 1426
MbiI CCGCTC 1 cut(s) 901
MboI GATC 6 cut(s) 244, 265, 370, 1003, 1308, 1424
MboII GAAGA 6 cut(s) 10, 22, 31, 1429, 1431, 1471
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 738
MlsI TGGCCA 1 cut(s) 799
MluCI AATT 3 cut(s) 292, 1167, 1503
MluNI TGGCCA 1 cut(s) 799
MlyI GAGTC 3 cut(s) 674, 889, 1023
MmeI TCCRAC 4 cut(s) 123, 184, 321, 348
Mox20I TGGCCA 1 cut(s) 799
MscI TGGCCA 1 cut(s) 799
MseI TTAA 2 cut(s) 542, 878
MslI CAYNNNNRTG 1 cut(s) 707
Msp20I TGGCCA 1 cut(s) 799
MspA1I CMGCKG 1 cut(s) 509
MspCI CTTAAG 1 cut(s) 877
MspI CCGG 6 cut(s) 210, 398, 537, 573, 807, 909
MspR9I CCNGG 7 cut(s) 398, 574, 669, 909, 963, 1191, 1306
Mva1269I GAATGC 3 cut(s) 549, 847, 1436
MvaI CCWGG 4 cut(s) 669, 963, 1191, 1306
MwoI GCNNNNNNNGC 1 cut(s) 428
NciI CCSGG 3 cut(s) 398, 574, 909
NcoI CCATGG 2 cut(s) 885, 1011
NdeII GATC 6 cut(s) 244, 265, 370, 1003, 1308, 1424
NlaIII CATG 7 cut(s) 473, 706, 712, 889, 907, 1015, 1246
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 4 cut(s) 809, 1056, 1381, 1393
NspI RCATGY 1 cut(s) 712
PaeR7I CTCGAG 1 cut(s) 425
PciI ACATGT 1 cut(s) 708
PctI GAATGC 3 cut(s) 549, 847, 1436
PfeI GAWTC 6 cut(s) 179, 376, 693, 759, 952, 1246
PflMI CCANNNNNTGG 1 cut(s) 509
PinAI ACCGGT 2 cut(s) 209, 806
PleI GAGTC 3 cut(s) 674, 889, 1023
PpsI GAGTC 3 cut(s) 674, 889, 1023
PscI ACATGT 1 cut(s) 708
Psp6I CCWGG 4 cut(s) 667, 961, 1189, 1304
PspGI CCWGG 4 cut(s) 667, 961, 1189, 1304
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 4 cut(s) 827, 882, 965, 1178
PsuI RGATCY 1 cut(s) 265
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 4 cut(s) 303, 483, 599, 701
RsaNI GTAC 4 cut(s) 302, 482, 598, 700
RseI CAYNNNNRTG 1 cut(s) 707
SaqAI TTAA 2 cut(s) 542, 878
Sau3AI GATC 6 cut(s) 244, 265, 370, 1003, 1308, 1424
Sau96I GGNCC 4 cut(s) 827, 882, 965, 1178
ScaI AGTACT 1 cut(s) 483
SchI GAGTC 3 cut(s) 674, 889, 1023
ScrFI CCNGG 7 cut(s) 398, 574, 669, 909, 963, 1191, 1306
SduI GDGCHC 1 cut(s) 738
SfaNI GCATC 3 cut(s) 706, 718, 1105
SfcI CTRYAG 1 cut(s) 554
Sfr274I CTCGAG 1 cut(s) 425
SinI GGWCC 3 cut(s) 827, 882, 965
SlaI CTCGAG 1 cut(s) 425
SmiMI CAYNNNNRTG 1 cut(s) 707
SmlI CTYRAG 4 cut(s) 425, 877, 956, 1122
SmoI CTYRAG 4 cut(s) 425, 877, 956, 1122
SpeI ACTAGT 1 cut(s) 1043
Sse9I AATT 3 cut(s) 292, 1167, 1503
SsiI CCGC 6 cut(s) 110, 176, 431, 500, 899, 1302
SspMI CTAG 7 cut(s) 440, 485, 525, 1044, 1145, 1326, 1350
StyD4I CCNGG 7 cut(s) 396, 572, 667, 907, 961, 1189, 1304
StyI CCWWGG 3 cut(s) 198, 885, 1011
TaaI ACNGT 5 cut(s) 66, 466, 481, 558, 1071
TaiI ACGT 2 cut(s) 303, 1058
TaqI TCGA 5 cut(s) 426, 752, 762, 921, 1206
TasI AATT 3 cut(s) 292, 1167, 1503
TatI WGTACW 2 cut(s) 481, 699
TfiI GAWTC 6 cut(s) 179, 376, 693, 759, 952, 1246
Tru1I TTAA 2 cut(s) 542, 878
Tru9I TTAA 2 cut(s) 542, 878
TscAI CASTG 3 cut(s) 290, 694, 738
TseFI GTSAC 4 cut(s) 809, 1056, 1381, 1393
Tsp45I GTSAC 4 cut(s) 809, 1056, 1381, 1393
TspDTI ATGAA 3 cut(s) 22, 719, 1259
TspGWI ACGGA 3 cut(s) 873, 1295, 1427
TspRI CASTG 3 cut(s) 290, 694, 738
Van91I CCANNNNNTGG 1 cut(s) 509
Vha464I CTTAAG 1 cut(s) 877
VneI GTGCAC 1 cut(s) 734
VpaK11BI GGWCC 3 cut(s) 827, 882, 965
XagI CCTNNNNNAGG 1 cut(s) 1353
XapI RAATTY 1 cut(s) 292
XbaI TCTAGA 1 cut(s) 1144
XceI RCATGY 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 665
XhoI CTCGAG 1 cut(s) 425
XmiI GTMKAC 3 cut(s) 461, 678, 1344
XspI CTAG 7 cut(s) 440, 485, 525, 1044, 1145, 1326, 1350
ZraI GACGTC 1 cut(s) 1056
ZrmI AGTACT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.