FvH4_2g08690

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
7608602 .. 7613370
4769 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g08690.t4

Sequence Viewer

Length: 1095 bp
ATGGCATCTCTCACCTCACACCTCCCCATCTTCCTCTTCCTCACCGCTCTCATTTCCTCAGAATCGCAGTCGTTCATCGGCGTCAACTACGGCCAGGTCGCCGACAACCTCCCTCCGCCGTCCTCCACCGCGAAGCTTCTCCAATCAACCTCCATCATGCAAGTCCGCCTCTACGGATCCGACCCCGACGTCATCAAGGCCCTCGCCAACACCGGCATAGGCATCGTCATCGGGATCGCCAACGGTGACATTCCCTCCCTCGCCGCCGACCCCAACGCCGCCGCACAGTGGATCAACTCCCACGTCGTCCCCTTCTACCCTTCCAGCAAGATCACCCTCATCAACGTCGGCAATGAAGTCCTTCTCTCAAACGACCAGGGCCTCATCTCGCAGCTCCTCCCCGCCATGCGAAATGTCCAGTCTGCCCTCTCCGCCGCGTCCCTCGGGGGGAAGGTCAGGGTCTCCACGGTCCACGCCATGACTGTGCTGTCGCAGTCCGACCCGCCCTCCTCGGGTCGGTTCAACCCGGGGATGCTTGACGTCCTCAAGGGCCTGCTGGCCTTCCAGAGGGACAATGCCTCCCCCTTCGCCGTAAACCCGTACCCGTTTTTTGCGTACCAGAGCGACCCGAGACCCGAAACGCTCGCGTTTTGCCTCTTCCAGCCCAACGCCGGACGGGTCGACTCGGGATCCGGGATCAAGTACATGAACATGTTCGATGCTCAGGTTGATGCTGTGAAGTCTGCCCTGAATGCAATTGGATTCAATGACATTGATATTTTGGTGGCTGAGACGGGATGGCCATACCACGGAGATAGCAATGAAGTTGGACCAAGTGTTGAGAATGCAAAGGCATACAATGGCAATTTAATTCAGCACCTAAGATCCATGGTTGGGACTCCATTGATTCCTGGAAAACCTGTGGAGACATATATCTTTGCACTCTATGATGAGGACTTGAAACCTGGTCCAGCCTCTGAGCGATCGTTTGGGCTGTTCAAGCCTGATTTATCTCCCACGTATGATGCTGGTCTCTCAAAGAGTAGCCAGTTGTTGGTTCTCTCTATTCTCAGACTCCCTCAACACCATCAGTGA

Protein Analysis

365

Amino Acids

38.9

Weight (kDa)

5.45

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 26 - 342 4.8e-79 Glycosyl hydrolases family 17
X8 PF07983 381 - 453 2e-20 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 188, 487
AatII GACGTC 2 cut(s) 192, 543
AccB7I CCANNNNNTGG 1 cut(s) 1054
AccBSI CCGCTC 1 cut(s) 47
AccI GTMKAC 1 cut(s) 681
AccII CGCG 3 cut(s) 131, 437, 647
AclWI GGATC 8 cut(s) 171, 184, 242, 299, 684, 697, 704, 879
AcoI YGGCCR 2 cut(s) 91, 800
AcyI GRCGYC 3 cut(s) 81, 189, 540
AfaI GTAC 3 cut(s) 602, 617, 704
AfiI CCNNNNNNNGG 9 cut(s) 288, 447, 512, 516, 567, 671, 809, 894, 1054
AflIII ACRYGT 1 cut(s) 711
AgsI TTSAA 4 cut(s) 523, 766, 961, 1000
AjiI CACGTC 1 cut(s) 304
AjnI CCWGG 4 cut(s) 93, 375, 910, 964
AluBI AGCT 2 cut(s) 136, 394
AluI AGCT 2 cut(s) 136, 394
Alw26I GTCTC 5 cut(s) 466, 625, 785, 920, 1037
AlwI GGATC 8 cut(s) 171, 184, 242, 299, 684, 697, 704, 879
AlwNI CAGNNNCTG 1 cut(s) 977
Ama87I CYCGRG 5 cut(s) 443, 511, 526, 628, 685
AoxI GGCC 6 cut(s) 91, 198, 379, 550, 558, 800
ApeKI GCWGC 1 cut(s) 391
Asp700I GAANNNNTTC 2 cut(s) 360, 713
AspS9I GGNCC 6 cut(s) 199, 379, 469, 550, 830, 968
AsuC2I CCSGG 3 cut(s) 527, 528, 694
AsuHPI GGTGA 4 cut(s) 4, 34, 257, 325
AvaI CYCGRG 5 cut(s) 443, 511, 526, 628, 685
AvaII GGWCC 3 cut(s) 469, 830, 968
BalI TGGCCA 1 cut(s) 802
BamHI GGATCC 2 cut(s) 176, 689
BbvI GCAGC 1 cut(s) 403
BccI CCATC 3 cut(s) 35, 161, 792
BceAI ACGGC 3 cut(s) 103, 106, 575
BcgI CGANNNNNNTGC 4 cut(s) 205, 211, 239, 245
BciT130I CCWGG 4 cut(s) 95, 377, 912, 966
BcnI CCSGG 3 cut(s) 527, 528, 694
BcoDI GTCTC 5 cut(s) 466, 625, 785, 920, 1037
BisI GCNGC 5 cut(s) 264, 279, 282, 392, 435
BlsI GCNGC 5 cut(s) 265, 280, 283, 393, 436
Bme1390I CCNGG 7 cut(s) 95, 377, 527, 528, 694, 912, 966
Bme18I GGWCC 3 cut(s) 469, 830, 968
BmeT110I CYCGRG 5 cut(s) 443, 511, 526, 628, 685
BmgBI CACGTC 1 cut(s) 304
BmgT120I GGNCC 6 cut(s) 199, 379, 469, 550, 830, 968
BmiI GGNNCC 2 cut(s) 178, 691
BmrFI CCNGG 7 cut(s) 95, 377, 527, 528, 694, 912, 966
BmsI GCATC 6 cut(s) 14, 231, 522, 709, 721, 1015
Bpu10I CCTNAGC 1 cut(s) 723
BpuEI CTTGAG 1 cut(s) 530
BpuMI CCSGG 3 cut(s) 527, 528, 694
BsaAI YACGTR 1 cut(s) 1020
BsaHI GRCGYC 3 cut(s) 81, 189, 540
BsaI GGTCTC 3 cut(s) 466, 625, 1037
BsaJI CCNNGG 8 cut(s) 376, 442, 465, 510, 526, 527, 808, 888
BsaXI ACNNNNNCTCC 6 cut(s) 239, 269, 491, 521, 563, 593
Bsc4I CCNNNNNNNGG 9 cut(s) 288, 447, 512, 516, 567, 671, 809, 894, 1054
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 418, 1048
Bse3DI GCAATG 2 cut(s) 358, 826
BseBI CCWGG 4 cut(s) 95, 377, 912, 966
BseDI CCNNGG 8 cut(s) 376, 442, 465, 510, 526, 527, 808, 888
BseGI GGATG 2 cut(s) 537, 803
BseLI CCNNNNNNNGG 9 cut(s) 288, 447, 512, 516, 567, 671, 809, 894, 1054
BseMI GCAATG 2 cut(s) 358, 826
BseMII CTCAG 5 cut(s) 72, 737, 780, 969, 1084
BseNI ACTGG 2 cut(s) 418, 1048
BseRI GAGGAG 2 cut(s) 386, 499
BseXI GCAGC 1 cut(s) 403
Bsh1236I CGCG 3 cut(s) 131, 437, 647
Bsh1285I CGRYCG 1 cut(s) 986
BshFI GGCC 6 cut(s) 93, 200, 381, 552, 560, 802
BsiEI CGRYCG 1 cut(s) 986
BsiHKCI CYCGRG 5 cut(s) 443, 511, 526, 628, 685
BsiSI CCGG 4 cut(s) 213, 527, 672, 693
BslFI GGGAC 4 cut(s) 293, 424, 584, 910
BslI CCNNNNNNNGG 9 cut(s) 288, 447, 512, 516, 567, 671, 809, 894, 1054
BsmAI GTCTC 5 cut(s) 466, 625, 785, 920, 1037
BsmBI CGTCTC 1 cut(s) 785
BsmFI GGGAC 4 cut(s) 293, 424, 584, 910
BsmI GAATGC 2 cut(s) 757, 850
BsnI GGCC 6 cut(s) 93, 200, 381, 552, 560, 802
Bso31I GGTCTC 3 cut(s) 466, 625, 1037
BsoBI CYCGRG 5 cut(s) 443, 511, 526, 628, 685
Bsp143I GATC 8 cut(s) 176, 234, 291, 330, 689, 696, 884, 983
Bsp19I CCATGG 1 cut(s) 888
BspANI GGCC 6 cut(s) 93, 200, 381, 552, 560, 802
BspCNI CTCAG 5 cut(s) 71, 736, 781, 970, 1083
BspFNI CGCG 3 cut(s) 131, 437, 647
BspLI GGNNCC 2 cut(s) 178, 691
BspPI GGATC 8 cut(s) 171, 184, 242, 299, 684, 697, 704, 879
BspTNI GGTCTC 3 cut(s) 466, 625, 1037
BsrBI CCGCTC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 358, 826
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 2 cut(s) 418, 1048
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 8 cut(s) 376, 442, 465, 510, 526, 527, 808, 888
BssMI GATC 8 cut(s) 176, 234, 291, 330, 689, 696, 884, 983
BssNI GRCGYC 3 cut(s) 81, 189, 540
BssT1I CCWWGG 1 cut(s) 888
Bst2UI CCWGG 4 cut(s) 95, 377, 912, 966
Bst4CI ACNGT 4 cut(s) 245, 288, 469, 484
Bst6I CTCTTC 2 cut(s) 41, 662
BstACI GRCGYC 3 cut(s) 81, 189, 540
BstBAI YACGTR 1 cut(s) 1020
BstC8I GCNNGC 3 cut(s) 554, 558, 645
BstDEI CTNAG 6 cut(s) 58, 723, 789, 881, 978, 1070
BstDSI CCRYGG 3 cut(s) 465, 808, 888
BstENI CCTNNNNNAGG 1 cut(s) 565
BstF5I GGATG 2 cut(s) 537, 803
BstFNI CGCG 3 cut(s) 131, 437, 647
BstKTI GATC 8 cut(s) 179, 237, 294, 333, 692, 699, 887, 986
BstMAI GTCTC 5 cut(s) 466, 625, 785, 920, 1037
BstMBI GATC 8 cut(s) 176, 234, 291, 330, 689, 696, 884, 983
BstMCI CGRYCG 1 cut(s) 986
BstMWI GCNNNNNNNGC 3 cut(s) 431, 752, 1000
BstNI CCWGG 4 cut(s) 95, 377, 912, 966
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 7 cut(s) 93, 375, 525, 526, 692, 910, 964
BstUI CGCG 3 cut(s) 131, 437, 647
BstV1I GCAGC 1 cut(s) 403
BstX2I RGATCY 3 cut(s) 176, 689, 884
BstYI RGATCY 3 cut(s) 176, 689, 884
BsuRI GGCC 6 cut(s) 93, 200, 381, 552, 560, 802
BtgI CCRYGG 3 cut(s) 465, 808, 888
BtrI CACGTC 1 cut(s) 304
BtsCI GGATG 2 cut(s) 537, 803
BtsIMutI CAGTG 1 cut(s) 293
Cac8I GCNNGC 3 cut(s) 554, 558, 645
CaiI CAGNNNCTG 1 cut(s) 977
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 6 cut(s) 199, 379, 469, 550, 830, 968
Cfr9I CCCGGG 1 cut(s) 526
CseI GACGC 2 cut(s) 70, 426
CsiI ACCWGGT 1 cut(s) 964
Csp6I GTAC 3 cut(s) 601, 616, 703
CviAII CATG 6 cut(s) 157, 406, 478, 706, 712, 889
CviQI GTAC 3 cut(s) 601, 616, 703
DdeI CTNAG 6 cut(s) 58, 723, 789, 881, 978, 1070
DpnI GATC 8 cut(s) 178, 236, 293, 332, 691, 698, 886, 985
DpnII GATC 8 cut(s) 176, 234, 291, 330, 689, 696, 884, 983
DrdI GACNNNNNNGTC 2 cut(s) 188, 487
DseDI GACNNNNNNGTC 2 cut(s) 188, 487
EaeI YGGCCR 2 cut(s) 91, 800
Eam1104I CTCTTC 2 cut(s) 41, 662
EarI CTCTTC 2 cut(s) 41, 662
EciI GGCGGA 3 cut(s) 105, 155, 421
Eco130I CCWWGG 1 cut(s) 888
Eco31I GGTCTC 3 cut(s) 466, 625, 1037
Eco47I GGWCC 3 cut(s) 469, 830, 968
Eco88I CYCGRG 5 cut(s) 443, 511, 526, 628, 685
EcoNI CCTNNNNNAGG 1 cut(s) 565
EcoO109I RGGNCCY 3 cut(s) 199, 379, 550
EcoRII CCWGG 4 cut(s) 93, 375, 910, 964
EcoT14I CCWWGG 1 cut(s) 888
ErhI CCWWGG 1 cut(s) 888
Esp3I CGTCTC 1 cut(s) 785
FaeI CATG 6 cut(s) 160, 409, 481, 709, 715, 892
FaqI GGGAC 4 cut(s) 293, 424, 584, 910
FatI CATG 6 cut(s) 156, 405, 477, 705, 711, 888
FauI CCCGC 2 cut(s) 409, 510
FblI GTMKAC 1 cut(s) 681
Fnu4HI GCNGC 5 cut(s) 264, 279, 282, 392, 435
FokI GGATG 2 cut(s) 544, 810
Fsp4HI GCNGC 5 cut(s) 264, 279, 282, 392, 435
GluI GCNGC 5 cut(s) 264, 279, 282, 392, 435
HaeIII GGCC 6 cut(s) 93, 200, 381, 552, 560, 802
HapII CCGG 4 cut(s) 213, 527, 672, 693
HgaI GACGC 2 cut(s) 70, 426
Hin1I GRCGYC 3 cut(s) 81, 189, 540
Hin1II CATG 6 cut(s) 160, 409, 481, 709, 715, 892
HincII GTYRAC 2 cut(s) 85, 682
HindII GTYRAC 2 cut(s) 85, 682
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 6 cut(s) 62, 683, 762, 898, 907, 1074
HpaII CCGG 4 cut(s) 213, 527, 672, 693
HphI GGTGA 4 cut(s) 4, 34, 257, 325
Hpy166II GTNNAC 4 cut(s) 85, 472, 595, 682
Hpy188I TCNGA 5 cut(s) 61, 181, 499, 979, 1073
Hpy188III TCNNGA 3 cut(s) 232, 565, 687
Hpy8I GTNNAC 4 cut(s) 85, 472, 595, 682
Hpy99I CGWCG 3 cut(s) 191, 308, 350
HpyAV CCTTC 6 cut(s) 322, 330, 371, 445, 571, 595
HpyCH4III ACNGT 4 cut(s) 245, 288, 469, 484
HpyCH4IV ACGT 5 cut(s) 189, 303, 345, 540, 1019
HpyCH4V TGCA 4 cut(s) 160, 755, 848, 941
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 752, 1000
HpyF3I CTNAG 6 cut(s) 58, 723, 789, 881, 978, 1070
HpySE526I ACGT 5 cut(s) 189, 303, 345, 540, 1019
Hsp92I GRCGYC 3 cut(s) 81, 189, 540
Hsp92II CATG 6 cut(s) 160, 409, 481, 709, 715, 892
Kzo9I GATC 8 cut(s) 176, 234, 291, 330, 689, 696, 884, 983
LmnI GCTCC 1 cut(s) 399
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 6 cut(s) 14, 231, 522, 709, 721, 1015
MabI ACCWGGT 1 cut(s) 964
MaeII ACGT 5 cut(s) 189, 303, 345, 540, 1019
MaeIII GTNAC 1 cut(s) 245
MalI GATC 8 cut(s) 178, 236, 293, 332, 691, 698, 886, 985
MbiI CCGCTC 1 cut(s) 47
MboI GATC 8 cut(s) 176, 234, 291, 330, 689, 696, 884, 983
MboII GAAGA 3 cut(s) 22, 28, 649
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 3 cut(s) 176, 689, 884
MlsI TGGCCA 1 cut(s) 802
MluCI AATT 3 cut(s) 756, 865, 870
MluNI TGGCCA 1 cut(s) 802
MlyI GAGTC 3 cut(s) 677, 892, 1068
MmeI TCCRAC 3 cut(s) 204, 522, 808
Mox20I TGGCCA 1 cut(s) 802
MroXI GAANNNNTTC 2 cut(s) 360, 713
MscI TGGCCA 1 cut(s) 802
MseI TTAA 1 cut(s) 869
MslI CAYNNNNRTG 2 cut(s) 482, 710
Msp20I TGGCCA 1 cut(s) 802
MspI CCGG 4 cut(s) 213, 527, 672, 693
MspR9I CCNGG 7 cut(s) 95, 377, 527, 528, 694, 912, 966
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 2 cut(s) 757, 850
MvaI CCWGG 4 cut(s) 95, 377, 912, 966
MvnI CGCG 3 cut(s) 131, 437, 647
MwoI GCNNNNNNNGC 3 cut(s) 431, 752, 1000
NciI CCSGG 3 cut(s) 527, 528, 694
NcoI CCATGG 1 cut(s) 888
NdeII GATC 8 cut(s) 176, 234, 291, 330, 689, 696, 884, 983
NlaIII CATG 6 cut(s) 160, 409, 481, 709, 715, 892
NlaIV GGNNCC 2 cut(s) 178, 691
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 715
PciI ACATGT 1 cut(s) 711
PctI GAATGC 2 cut(s) 757, 850
PdmI GAANNNNTTC 2 cut(s) 360, 713
PfeI GAWTC 3 cut(s) 62, 762, 907
PflMI CCANNNNNTGG 1 cut(s) 1054
PfoI TCCNGGA 2 cut(s) 692, 910
PkrI GCNGC 5 cut(s) 265, 280, 283, 393, 436
Ple19I CGATCG 1 cut(s) 986
PleI GAGTC 3 cut(s) 677, 892, 1068
PpsI GAGTC 3 cut(s) 677, 892, 1068
Ppu21I YACGTR 1 cut(s) 1020
PscI ACATGT 1 cut(s) 711
Psp6I CCWGG 4 cut(s) 93, 375, 910, 964
PspGI CCWGG 4 cut(s) 93, 375, 910, 964
PspN4I GGNNCC 2 cut(s) 178, 691
PspPI GGNCC 6 cut(s) 199, 379, 469, 550, 830, 968
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 3 cut(s) 176, 689, 884
PvuI CGATCG 1 cut(s) 986
RsaI GTAC 3 cut(s) 602, 617, 704
RsaNI GTAC 3 cut(s) 601, 616, 703
RseI CAYNNNNRTG 2 cut(s) 482, 710
SalI GTCGAC 1 cut(s) 680
SaqAI TTAA 1 cut(s) 869
SatI GCNGC 5 cut(s) 264, 279, 282, 392, 435
Sau3AI GATC 8 cut(s) 176, 234, 291, 330, 689, 696, 884, 983
Sau96I GGNCC 6 cut(s) 199, 379, 469, 550, 830, 968
SchI GAGTC 3 cut(s) 677, 892, 1068
ScrFI CCNGG 7 cut(s) 95, 377, 527, 528, 694, 912, 966
SexAI ACCWGGT 1 cut(s) 964
SfaNI GCATC 6 cut(s) 14, 231, 522, 709, 721, 1015
SinI GGWCC 3 cut(s) 469, 830, 968
SmaI CCCGGG 1 cut(s) 528
SmiMI CAYNNNNRTG 2 cut(s) 482, 710
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
Sse9I AATT 3 cut(s) 756, 865, 870
StyD4I CCNGG 7 cut(s) 93, 375, 525, 526, 692, 910, 964
StyI CCWWGG 1 cut(s) 888
TaaI ACNGT 4 cut(s) 245, 288, 469, 484
TaiI ACGT 5 cut(s) 192, 306, 348, 543, 1022
TaqI TCGA 2 cut(s) 681, 717
TasI AATT 3 cut(s) 756, 865, 870
TatI WGTACW 1 cut(s) 702
TauI GCSGC 4 cut(s) 266, 281, 284, 437
TfiI GAWTC 3 cut(s) 62, 762, 907
Tru1I TTAA 1 cut(s) 869
Tru9I TTAA 1 cut(s) 869
TscAI CASTG 1 cut(s) 293
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 4 cut(s) 64, 369, 722, 837
TspGWI ACGGA 2 cut(s) 189, 825
TspMI CCCGGG 1 cut(s) 526
TspRI CASTG 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 1054
VpaK11BI GGWCC 3 cut(s) 469, 830, 968
XagI CCTNNNNNAGG 1 cut(s) 565
XceI RCATGY 1 cut(s) 715
XmaI CCCGGG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 681
XmnI GAANNNNTTC 2 cut(s) 360, 713
ZraI GACGTC 2 cut(s) 190, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.