Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007673

Physical Location & Seq

Genomic Coordinates Forward (+)

1146859 .. 1151911

Gene Structure 5053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0007700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGATTTTAAAGCGCGCGCAACTCACCGCTCTCAAGGAGCCTCCAGTAGTGAACCAAGGTAGCACTGCGGTTCCACTACCCGATGGCACTGTTCGTTTTGGTTCACTACCTTCTCCACCGGTGGTCTCAGCTACTGAGGATACCTCATCCACTATGGCCAGATTTGAGGGTAATCCAACTCATACCTCAATTTTTGCTGAATTCAATTTTGCTACTGATGATGTGTTATTACAATTAACTAGTAATGTGCTTACTAGTTCTGTTGAGATCACCAATGAGTTAAAAGTTACTGGGAATGATGGTGAAAAAAGAGAGGAAGGTATGGCTGGAAATTTAGGGCTTAAACCTCTAGGTAGTGGTAGTACTATGGCTGTAGTGAGTTGTACAGTCAGTGGTTCATTAAGTGGAGCACCACCCCAATACTTCCAGCAAACCAATTTTGCCTCCCAATCATATCATACCTCTACTAGATCTAGCGGCATGGGGTTTAGTCATTCTCAACCACACGCATCTCATATGCATACACAGATCCCAAACGAACATACCCCTTTTGTGATGACATATGCTGGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

191

Amino Acids

20.21

Weight (kDa)

5.74

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G16230 AT4G34480 AT4G34480 AT4G34480
fragaria_vesca	FvH4_2g08690 FvH4_2g08690 FvH4_2g08690 FvH4_2g08690
malus_domestica	MD05G1067300.v1.1 MD10G1077100.v1.1
prunus_persica	Prupe.8G098000_v2.0.a1 Prupe.8G098000_v2.0.a1
pyrus_communis	pycom10g05920 pycom10g06020
rosa_chinensis	RchiOBHm_Chr6g0264131
rosa_laevigata	RLG00000014289
rosa_multiflora	Rmu_sc0009205.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431430 Rroxscaffold_7G00203580
rosa_rugosa	Rorug06G0007700
rosa_samantha	Rh6AG129300 Rh6BG125500 Rh6CG124300
rosa_wichuraiana	Rw6G011180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	29
AccII	CGCG	2 cut(s)	15, 17
AciI	CCGC	3 cut(s)	27, 68, 477
AclWI	GGATC	1 cut(s)	523
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	2 cut(s)	200, 331
AfaI	GTAC	2 cut(s)	364, 385
AgeI	ACCGGT	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	205
AhlI	ACTAGT	2 cut(s)	239, 254
AluBI	AGCT	1 cut(s)	131
AluI	AGCT	1 cut(s)	131
Alw21I	GWGCWC	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	523
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	200, 331
AsiGI	ACCGGT	1 cut(s)	118
AspLEI	GCGC	3 cut(s)	15, 17, 19
AspS9I	GGNCC	1 cut(s)	569
AsuHPI	GGTGA	3 cut(s)	16, 262, 314
AvaII	GGWCC	1 cut(s)	569
BalI	TGGCCA	1 cut(s)	158
Bbv12I	GWGCWC	1 cut(s)	412
BccI	CCATC	2 cut(s)	77, 293
BciVI	GTATCC	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	130
BcuI	ACTAGT	2 cut(s)	239, 254
BfaI	CTAG	5 cut(s)	240, 255, 350, 468, 474
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	470
BisI	GCNGC	1 cut(s)	478
BlsI	GCNGC	1 cut(s)	479
BmcAI	AGTACT	1 cut(s)	364
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	2 cut(s)	39, 72
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	518
BmuI	ACTGGG	1 cut(s)	300
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpmI	CTGGAG	1 cut(s)	27
BpuEI	CTTGAG	1 cut(s)	17
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	118
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	44, 295
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	126, 141
BseNI	ACTGG	2 cut(s)	44, 295
BsePI	GCGCGC	2 cut(s)	13, 15
Bsh1236I	CGCG	2 cut(s)	15, 17
BshFI	GGCC	1 cut(s)	158
BshTI	ACCGGT	1 cut(s)	118
BsiHKAI	GWGCWC	1 cut(s)	412
BsiSI	CCGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	130
BsnI	GGCC	1 cut(s)	158
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	412
Bsp1407I	TGTACA	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	267, 470, 528
BspACI	CCGC	3 cut(s)	27, 68, 477
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	2 cut(s)	127, 140
BspFNI	CGCG	2 cut(s)	15, 17
BspLI	GGNNCC	2 cut(s)	39, 72
BspPI	GGATC	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	118
BsrGI	TGTACA	1 cut(s)	383
BsrI	ACTGG	2 cut(s)	44, 295
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	55
BssHII	GCGCGC	2 cut(s)	13, 15
BssMI	GATC	3 cut(s)	267, 470, 528
BssT1I	CCWWGG	1 cut(s)	55
Bst4CI	ACNGT	2 cut(s)	91, 388
BstAUI	TGTACA	1 cut(s)	383
BstC8I	GCNNGC	2 cut(s)	15, 17
BstDEI	CTNAG	2 cut(s)	127, 135
BstF5I	GGATG	1 cut(s)	146
BstFNI	CGCG	2 cut(s)	15, 17
BstHHI	GCGC	3 cut(s)	15, 17, 19
BstKTI	GATC	3 cut(s)	270, 473, 531
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	3 cut(s)	267, 470, 528
BstSFI	CTRYAG	1 cut(s)	372
BstUI	CGCG	2 cut(s)	15, 17
BstX2I	RGATCY	2 cut(s)	470, 528
BstYI	RGATCY	2 cut(s)	470, 528
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	146
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	3 cut(s)	63, 87, 397
Cac8I	GCNNGC	2 cut(s)	15, 17
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	3 cut(s)	15, 17, 19
Cfr10I	RCCGGY	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	363, 384
CspAI	ACCGGT	1 cut(s)	118
CviAII	CATG	1 cut(s)	481
CviJI	RGCY	6 cut(s)	40, 131, 158, 326, 340, 371
CviKI_1	RGCY	6 cut(s)	40, 131, 158, 326, 340, 371
CviQI	GTAC	2 cut(s)	363, 384
DdeI	CTNAG	2 cut(s)	127, 135
DpnI	GATC	3 cut(s)	269, 472, 530
DpnII	GATC	3 cut(s)	267, 470, 528
DraI	TTTAAA	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	156
Eco130I	CCWWGG	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	569
EcoRI	GAATTC	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	522
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	1 cut(s)	484
FatI	CATG	1 cut(s)	480
FauNDI	CATATG	2 cut(s)	516, 562
Fnu4HI	GCNGC	1 cut(s)	478
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	1 cut(s)	478
FspBI	CTAG	5 cut(s)	240, 255, 350, 468, 474
GlaI	GCGC	3 cut(s)	14, 16, 18
GluI	GCNGC	1 cut(s)	478
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	1 cut(s)	119
HhaI	GCGC	3 cut(s)	15, 17, 19
Hin1II	CATG	1 cut(s)	484
Hin6I	GCGC	3 cut(s)	13, 15, 17
HinP1I	GCGC	3 cut(s)	13, 15, 17
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	3 cut(s)	16, 262, 314
Hpy166II	GTNNAC	2 cut(s)	52, 104
Hpy8I	GTNNAC	2 cut(s)	52, 104
HpyAV	CCTTC	2 cut(s)	120, 311
HpyCH4III	ACNGT	2 cut(s)	91, 388
HpyCH4V	TGCA	1 cut(s)	520
HpyF3I	CTNAG	2 cut(s)	127, 135
Hsp92II	CATG	1 cut(s)	484
HspAI	GCGC	3 cut(s)	13, 15, 17
Kzo9I	GATC	3 cut(s)	267, 470, 528
LmnI	GCTCC	2 cut(s)	37, 407
LpnPI	CCDG	7 cut(s)	57, 132, 172, 276, 312, 440, 552
LweI	GCATC	1 cut(s)	518
MaeI	CTAG	5 cut(s)	240, 255, 350, 468, 474
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	3 cut(s)	269, 472, 530
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	3 cut(s)	267, 470, 528
MflI	RGATCY	2 cut(s)	470, 528
MhlI	GDGCHC	1 cut(s)	412
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	6 cut(s)	189, 200, 205, 233, 331, 436
MluNI	TGGCCA	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	200
MnlI	CCTC	9 cut(s)	51, 130, 154, 160, 196, 307, 357, 454, 472
Mox20I	TGGCCA	1 cut(s)	158
Mph1103I	ATGCAT	1 cut(s)	522
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	6 cut(s)	8, 236, 281, 342, 401, 574
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	1 cut(s)	119
MvnI	CGCG	2 cut(s)	15, 17
NdeI	CATATG	2 cut(s)	516, 562
NdeII	GATC	3 cut(s)	267, 470, 528
NlaIII	CATG	1 cut(s)	484
NlaIV	GGNNCC	2 cut(s)	39, 72
NsiI	ATGCAT	1 cut(s)	522
PauI	GCGCGC	2 cut(s)	13, 15
PinAI	ACCGGT	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	39, 72
PspPI	GGNCC	1 cut(s)	569
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	470, 528
PteI	GCGCGC	2 cut(s)	13, 15
RsaI	GTAC	2 cut(s)	364, 385
RsaNI	GTAC	2 cut(s)	363, 384
SaqAI	TTAA	6 cut(s)	8, 236, 281, 342, 401, 574
SatI	GCNGC	1 cut(s)	478
Sau3AI	GATC	3 cut(s)	267, 470, 528
Sau96I	GGNCC	1 cut(s)	569
ScaI	AGTACT	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	412
SetI	ASST	9 cut(s)	61, 112, 133, 146, 188, 322, 349, 355, 464
SfaNI	GCATC	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	372
SgrAI	CRCCGGYG	1 cut(s)	118
SinI	GGWCC	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SpeI	ACTAGT	2 cut(s)	239, 254
Sse9I	AATT	6 cut(s)	189, 200, 205, 233, 331, 436
SsiI	CCGC	3 cut(s)	27, 68, 477
SspMI	CTAG	5 cut(s)	240, 255, 350, 468, 474
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	91, 388
TasI	AATT	6 cut(s)	189, 200, 205, 233, 331, 436
TatI	WGTACW	2 cut(s)	362, 383
TauI	GCSGC	1 cut(s)	480
Tru1I	TTAA	6 cut(s)	8, 236, 281, 342, 401, 574
Tru9I	TTAA	6 cut(s)	8, 236, 281, 342, 401, 574
TscAI	CASTG	3 cut(s)	70, 94, 397
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	3 cut(s)	70, 94, 397
VpaK11BI	GGWCC	1 cut(s)	569
XapI	RAATTY	2 cut(s)	200, 331
XspI	CTAG	5 cut(s)	240, 255, 350, 468, 474
ZrmI	AGTACT	1 cut(s)	364
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.