Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010901

Physical Location & Seq

Genomic Coordinates Forward (+)

7564240 .. 7566601

Gene Structure 2362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGTGTTGGATCTCAATGAGCCAGTCAAGATTCATTATAAAGTCTTTATTTAGCACAGCAGGAGGTTTCTTACTTGGATCTGCTCTCTCAAATCCGCCGTCTCTAGCCACCGCGTTTTCTTCTTCTTCCTCGTCCTCCTCCGCCGCCGCCGCCGTCGACATGGAAACTCACAAAACCAAGGTTTGCATCGTCGGAAGTGGACCAGCAGCACACACGGCGGCGATCTATGCATCGAGAGCGGAGCTTAAGCCTCTTCTCTTCGAAGGATGGATGGCTAACGACATCGCTCCCGGCGGTCAATTAACTACAACAACCGACGTCGAAAACTTCCCTGGGTTCCCTGAAGGTATTCTCGGTATTGATATCGTTGAGAAATTCAGAAAACAATCGGAGAGATTTGGAACTACGATCTTCACGGAAACTGTTAACAAAGTTGATTTCTCATCGAAACCGTTTAAGCTATTCACTGATTCGAGAACTGTTCTCGCTGATTCTGTAATCATTTCTACTGGAGCTGTTGCTAAACGTCTTAGCTTCACTGGATCTGGTGAAGGTAATGGTGGTTTTTGGAATCGTGGTATCTCCGCTTGTGCTGTTTGCGACGGAGCTGCTCCGATTTTTAGGAATAAGCCTCTTGTGGTTATTGGTGGTGGTGATTCAGCTATGGAGGAAGCGAATTTTCTGACTAAGTATGGATCTAAGGTTTATATTATTCATAGGAGGGATACGTTTAGGGCGTCTAAGATTATGCAGCAGAGAGCTTTGTCTAACCCTAAGATTGAAGTGATTTGGAACTCTGCCGTGGTTGAGGCGTATGGTGATGAAAATGGACGTGTTCTTGGAGGATTGAAGGTGAAGAATGTTGTTACTGGGGATGTTTCAGATCTGAAGGTGTCTGGATTGTTCTTTGCTATTGGTCATGAGCCAGCTACGAAGTTTTTGGATGGGCAGCTTGAGCTTGATGAAGATGGTTATGTTGTGACCAAGCCAGGTACTACTAAGACGAGCGTGGTTGGTGTATTTGCTGCTGGAGATGTTCAAGACAAGAAGTATAGACAGGCCATCACTGCTGCAGGAACTGGGTGCATGGCGGCATTGGATGCAGAGCATTACTTACAAGAGATTGGATCTCAGGAGGGTAAGAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009941 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0055114 GO:0065007 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

383

Amino Acids

40.63

Weight (kDa)

6.26

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	60 - 361	3.8e-47	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3	PF13738	135 - 344	2.4e-17	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	212 - 279	1.1e-16	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17420 AT2G17420 AT4G35460
fragaria_vesca	FvH4_1g09960
malus_domestica	MD02G1108200.v1.1 MD15G1227600.v1.1
prunus_persica	Prupe.7G187600_v2.0.a1 Prupe.7G187600_v2.0.a1
pyrus_communis	pycom02g08690 pycom15g20260
rosa_chinensis	RchiOBHm_Chr2g0096751
rosa_laevigata	RLG00000016667
rosa_multiflora	Rmu_sc0004291.1_g000009 Rmu_ssc0000215.1_g000053
rosa_roxburghii	Rroxscaffold_2G00145350
rosa_rugosa	Rorug02G0060500
rosa_samantha	Rh2BG110100 Rh2CG112000 Rh2DG111400
rosa_wichuraiana	Rw2G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AatII	GACGTC	1 cut(s)	321
AccBSI	CCGCTC	1 cut(s)	239
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	113
AclWI	GGATC	5 cut(s)	17, 85, 550, 703, 1135
AcsI	RAATTY	2 cut(s)	374, 676
AcuI	CTGAAG	2 cut(s)	363, 908
AcyI	GRCGYC	2 cut(s)	318, 737
AfaI	GTAC	1 cut(s)	994
AflII	CTTAAG	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	832
AgsI	TTSAA	3 cut(s)	782, 850, 1040
AjiI	CACGTC	1 cut(s)	833
AjnI	CCWGG	2 cut(s)	331, 988
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	5 cut(s)	17, 85, 550, 703, 1135
AlwNI	CAGNNNCTG	1 cut(s)	1079
AoxI	GGCC	1 cut(s)	1059
ApeKI	GCWGC	6 cut(s)	206, 608, 751, 949, 1025, 1070
ApoI	RAATTY	2 cut(s)	374, 676
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
Asp700I	GAANNNNTTC	1 cut(s)	348
AspS9I	GGNCC	1 cut(s)	200
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	4 cut(s)	560, 665, 830, 865
AsuII	TTCGAA	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	200
BbvI	GCAGC	6 cut(s)	218, 595, 763, 961, 1012, 1057
BccI	CCATC	5 cut(s)	261, 265, 938, 962, 1070
BceAI	ACGGC	4 cut(s)	82, 137, 231, 785
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	2 cut(s)	333, 990
BciVI	GTATCC	1 cut(s)	718
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	1071
BfrI	CTTAAG	1 cut(s)	245
BfuI	GTATCC	1 cut(s)	718
BglII	AGATCT	1 cut(s)	883
Bme1390I	CCNGG	3 cut(s)	291, 333, 990
Bme18I	GGWCC	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	833
BmgT120I	GGNCC	1 cut(s)	200
BmiI	GGNNCC	1 cut(s)	338
BmrFI	CCNGG	3 cut(s)	291, 333, 990
BmrI	ACTGGG	2 cut(s)	879, 1089
BmsI	GCATC	3 cut(s)	195, 239, 1090
BmuI	ACTGGG	2 cut(s)	879, 1089
BpmI	CTGGAG	2 cut(s)	531, 1050
Bpu14I	TTCGAA	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	974
BpuMI	CCSGG	1 cut(s)	291
BsaHI	GRCGYC	2 cut(s)	318, 737
BsaJI	CCNNGG	4 cut(s)	177, 331, 332, 801
Bse1I	ACTGG	5 cut(s)	22, 514, 544, 874, 1084
BseBI	CCWGG	2 cut(s)	333, 990
BseDI	CCNNGG	4 cut(s)	177, 331, 332, 801
BseGI	GGATG	5 cut(s)	272, 276, 880, 949, 1105
BseMII	CTCAG	1 cut(s)	1145
BseNI	ACTGG	5 cut(s)	22, 514, 544, 874, 1084
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	6 cut(s)	218, 595, 763, 961, 1012, 1057
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	1061
BsiSI	CCGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	1061
Bsp119I	TTCGAA	1 cut(s)	261
Bsp143I	GATC	8 cut(s)	9, 77, 222, 408, 542, 695, 883, 1127
BspANI	GGCC	1 cut(s)	1061
BspCNI	CTCAG	1 cut(s)	1144
BspFNI	CGCG	1 cut(s)	113
BspHI	TCATGA	1 cut(s)	919
BspLI	GGNNCC	1 cut(s)	338
BspMAI	CTGCAG	1 cut(s)	1075
BspPI	GGATC	5 cut(s)	17, 85, 550, 703, 1135
BspT104I	TTCGAA	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	245
BsrBI	CCGCTC	1 cut(s)	239
BsrI	ACTGG	5 cut(s)	22, 514, 544, 874, 1084
BssECI	CCNNGG	4 cut(s)	177, 331, 332, 801
BssMI	GATC	8 cut(s)	9, 77, 222, 408, 542, 695, 883, 1127
BssNI	GRCGYC	2 cut(s)	318, 737
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	2 cut(s)	333, 990
Bst4CI	ACNGT	3 cut(s)	424, 453, 481
Bst6I	CTCTTC	2 cut(s)	258, 263
BstACI	GRCGYC	2 cut(s)	318, 737
BstAFI	CTTAAG	1 cut(s)	245
BstAPI	GCANNNNNTGC	1 cut(s)	1100
BstBI	TTCGAA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	927
BstDEI	CTNAG	7 cut(s)	530, 687, 699, 741, 774, 999, 1131
BstDSI	CCRYGG	1 cut(s)	801
BstF5I	GGATG	5 cut(s)	272, 276, 880, 949, 1105
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	8 cut(s)	12, 80, 225, 411, 545, 698, 886, 1130
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	8 cut(s)	9, 77, 222, 408, 542, 695, 883, 1127
BstMWI	GCNNNNNNNGC	7 cut(s)	149, 215, 227, 236, 955, 1067, 1100
BstNI	CCWGG	2 cut(s)	333, 990
BstSCI	CCNGG	3 cut(s)	289, 331, 988
BstSFI	CTRYAG	1 cut(s)	1071
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	6 cut(s)	218, 595, 763, 961, 1012, 1057
BstX2I	RGATCY	6 cut(s)	9, 77, 542, 695, 883, 1127
BstYI	RGATCY	6 cut(s)	9, 77, 542, 695, 883, 1127
BsuI	GTATCC	1 cut(s)	718
BsuRI	GGCC	1 cut(s)	1061
BtgI	CCRYGG	1 cut(s)	801
BtgZI	GCGATG	1 cut(s)	268
BtrI	CACGTC	1 cut(s)	833
BtsCI	GGATG	5 cut(s)	272, 276, 880, 949, 1105
BtsI	GCAGTG	1 cut(s)	1065
BtsIMutI	CAGTG	3 cut(s)	465, 537, 1065
Cac8I	GCNNGC	1 cut(s)	927
CaiI	CAGNNNCTG	1 cut(s)	1079
CciI	TCATGA	1 cut(s)	919
Cfr13I	GGNCC	1 cut(s)	200
CseI	GACGC	1 cut(s)	726
Csp6I	GTAC	1 cut(s)	993
CviAII	CATG	3 cut(s)	160, 920, 1087
CviQI	GTAC	1 cut(s)	993
DdeI	CTNAG	7 cut(s)	530, 687, 699, 741, 774, 999, 1131
DpnI	GATC	8 cut(s)	11, 79, 224, 410, 544, 697, 885, 1129
DpnII	GATC	8 cut(s)	9, 77, 222, 408, 542, 695, 883, 1127
Eam1104I	CTCTTC	2 cut(s)	258, 263
EarI	CTCTTC	2 cut(s)	258, 263
EciI	GGCGGA	2 cut(s)	84, 130
Eco130I	CCWWGG	1 cut(s)	177
Eco32I	GATATC	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	200
Eco57I	CTGAAG	2 cut(s)	363, 908
EcoRII	CCWGG	2 cut(s)	331, 988
EcoRV	GATATC	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	177
EcoT22I	ATGCAT	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	177
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	3 cut(s)	163, 923, 1090
FatI	CATG	3 cut(s)	159, 919, 1086
FblI	GTMKAC	1 cut(s)	156
FokI	GGATG	5 cut(s)	279, 283, 887, 956, 1112
FspBI	CTAG	1 cut(s)	104
GsuI	CTGGAG	2 cut(s)	531, 1050
HaeIII	GGCC	1 cut(s)	1061
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	726
Hin1I	GRCGYC	2 cut(s)	318, 737
Hin1II	CATG	3 cut(s)	163, 923, 1090
HincII	GTYRAC	2 cut(s)	157, 427
HindII	GTYRAC	2 cut(s)	157, 427
HinfI	GANTC	5 cut(s)	30, 470, 491, 571, 656
HpaI	GTTAAC	1 cut(s)	427
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	4 cut(s)	560, 665, 830, 865
Hpy166II	GTNNAC	3 cut(s)	157, 200, 427
Hpy188I	TCNGA	7 cut(s)	194, 380, 391, 615, 684, 883, 888
Hpy188III	TCNNGA	7 cut(s)	27, 234, 474, 897, 920, 1040, 1133
Hpy8I	GTNNAC	3 cut(s)	157, 200, 427
Hpy99I	CGWCG	5 cut(s)	158, 194, 320, 323, 605
HpyAV	CCTTC	5 cut(s)	257, 338, 545, 844, 883
HpyCH4III	ACNGT	3 cut(s)	424, 453, 481
HpyCH4IV	ACGT	4 cut(s)	318, 526, 728, 832
HpyCH4V	TGCA	6 cut(s)	186, 230, 751, 1073, 1086, 1103
HpyF10VI	GCNNNNNNNGC	7 cut(s)	149, 215, 227, 236, 955, 1067, 1100
HpyF3I	CTNAG	7 cut(s)	530, 687, 699, 741, 774, 999, 1131
HpySE526I	ACGT	4 cut(s)	318, 526, 728, 832
Hsp92I	GRCGYC	2 cut(s)	318, 737
Hsp92II	CATG	3 cut(s)	163, 923, 1090
KspAI	GTTAAC	1 cut(s)	427
Kzo9I	GATC	8 cut(s)	9, 77, 222, 408, 542, 695, 883, 1127
LmnI	GCTCC	5 cut(s)	241, 292, 512, 605, 616
Lsp1109I	GCAGC	6 cut(s)	218, 595, 763, 961, 1012, 1057
LweI	GCATC	3 cut(s)	195, 239, 1090
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	4 cut(s)	318, 526, 728, 832
MaeIII	GTNAC	2 cut(s)	865, 979
MalI	GATC	8 cut(s)	11, 79, 224, 410, 544, 697, 885, 1129
MbiI	CCGCTC	1 cut(s)	239
MboI	GATC	8 cut(s)	9, 77, 222, 408, 542, 695, 883, 1127
MboII	GAAGA	8 cut(s)	111, 114, 117, 245, 250, 403, 868, 977
MflI	RGATCY	6 cut(s)	9, 77, 542, 695, 883, 1127
MluCI	AATT	3 cut(s)	299, 374, 676
MmeI	TCCRAC	1 cut(s)	172
Mph1103I	ATGCAT	1 cut(s)	232
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	4 cut(s)	246, 302, 426, 456
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	3 cut(s)	291, 333, 990
MvaI	CCWGG	2 cut(s)	333, 990
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	7 cut(s)	149, 215, 227, 236, 955, 1067, 1100
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	8 cut(s)	9, 77, 222, 408, 542, 695, 883, 1127
NlaIII	CATG	3 cut(s)	163, 923, 1090
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	979
NsiI	ATGCAT	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	261
PagI	TCATGA	1 cut(s)	919
PasI	CCCWGGG	1 cut(s)	332
PcsI	WCGNNNNNNNCGW	1 cut(s)	734
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	5 cut(s)	30, 470, 491, 571, 656
PsiI	TTATAA	1 cut(s)	38
Psp6I	CCWGG	2 cut(s)	331, 988
PspGI	CCWGG	2 cut(s)	331, 988
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	200
PstI	CTGCAG	1 cut(s)	1075
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	6 cut(s)	9, 77, 542, 695, 883, 1127
RsaI	GTAC	1 cut(s)	994
RsaNI	GTAC	1 cut(s)	993
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	4 cut(s)	246, 302, 426, 456
Sau3AI	GATC	8 cut(s)	9, 77, 222, 408, 542, 695, 883, 1127
Sau96I	GGNCC	1 cut(s)	200
ScrFI	CCNGG	3 cut(s)	291, 333, 990
SfaNI	GCATC	3 cut(s)	195, 239, 1090
SfcI	CTRYAG	1 cut(s)	1071
SfuI	TTCGAA	1 cut(s)	261
SinI	GGWCC	1 cut(s)	200
SmlI	CTYRAG	2 cut(s)	245, 953
SmoI	CTYRAG	2 cut(s)	245, 953
Sse9I	AATT	3 cut(s)	299, 374, 676
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	289, 331, 988
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	424, 453, 481
TaiI	ACGT	4 cut(s)	321, 529, 731, 835
TaqI	TCGA	6 cut(s)	156, 233, 261, 321, 446, 473
TasI	AATT	3 cut(s)	299, 374, 676
TauI	GCSGC	5 cut(s)	146, 149, 152, 221, 1094
TfiI	GAWTC	5 cut(s)	30, 470, 491, 571, 656
Tru1I	TTAA	4 cut(s)	246, 302, 426, 456
Tru9I	TTAA	4 cut(s)	246, 302, 426, 456
TscAI	CASTG	3 cut(s)	472, 544, 1072
TseFI	GTSAC	1 cut(s)	979
TseI	GCWGC	6 cut(s)	206, 608, 751, 949, 1025, 1070
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	4 cut(s)	22, 704, 837, 978
TspGWI	ACGGA	2 cut(s)	431, 618
TspRI	CASTG	3 cut(s)	472, 544, 1072
Vha464I	CTTAAG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	200
XapI	RAATTY	2 cut(s)	374, 676
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	319
Zsp2I	ATGCAT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.