FvH4_1g09960

Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
5404256 .. 5406497
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09960.t1

Sequence Viewer

Length: 1143 bp
ATGAGGTGCTGCCCAGGCCCAAACAAGTTGCTCAGTCTCCTGAAAAAAGCTCGAGACGCAGTTGGAGTCGCCGCCGCCGCTTCGTTCACCTCTCCTTATTCTTCTGCTTCTCTCGCCGCCGCTCCCAAGGTAGCTTCCGCCATGGACGAAATTCAAGCCCTCAAAACCAAGGTCTGCATCATCGGCAGCGGCCCGGCCGCGCACACGGCGGCGATATACGCCGCCCGCGCCGAGCTGAAGCCAATTCTCTTCGAAGGTTGGATGGCCAACGACATCGCCCCCGGCGGCCAGCTCACCACCACCTCCGACGTCGAGAATTTCCCGGGGTTTCCGGACGGGATCCTCGGCATGGAGCTCATGGACCGCTGCCGGAGCCAGTCGGTCCGGTTCGGGACTCAGATCTTCACCGAGACGGTTTCGAAAGTCGACTTCTCGACGACGCCGTTTAAGATCTACACCGACGCGAAAACCGTCGAGGCCGACACCGTCGTCGTCGCCACCGGCGCGGTGGCGAAGCGGCTCGTGTTCCCTGGCTCCGGCGACGGCAAGGGAGGCTTCTGGAACCGCGGGATTTCCGCCTGCGCCGTGTGCGACGGAGCTGCTCCGATTTTCAGGAACAAACCCTTGGCGGTGATCGGAGGCGGCGACTCGGCTATGGAGGAGGCGACGTTTCTGACCAAGTACGGCTCGGAAGTGAACATTATCCACAGGAGGGACACTTTCAGAGCTTCGAAGATTATGCAGAACAGGGCTCTGAATAACCCTAAGATCAAAGTGCTGTGGAATTCTGAGGTGGTGGAGGCTTACGGGGATGGAGAGAAGGGTCCTCTTGCCGGGTTGAAGGTGAAGAATGTTGTGACTGGAGAAGTGTCTGACTTGAAGGTTTCGGGGCTATTCTTTGCCATTGGTCACGAGCCTGCGACTAAGTTTTTGGATGGGCAATTGGAGCTTCATCCTGATGGTTATGTTAAGACCAAGCCGGGCACGACGGAGACCAGTGTTCGTGGGGTTTTTGCTGCCGGAGATGTGCAGGACAAGAAGTATAGGCAGGCTGTTACTGCTGCCGGAACCGGGTGCATGGCAGCTCTGGAAGCAGAACATTACTTGCAAGAGATCGGATCCCAGGAGGGTAAGAGTGATTGA

Protein Analysis

381

Amino Acids

40.14

Weight (kDa)

7.56

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyr_redox_2 PF07992 57 - 358 8.1e-49 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 136 - 341 1.8e-18 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox PF00070 209 - 274 1.5e-15 Pyridine nucleotide-disulphide oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010901)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 488
AatII GACGTC 1 cut(s) 312
AccBSI CCGCTC 1 cut(s) 122
AccI GTMKAC 1 cut(s) 426
AccII CGCG 5 cut(s) 200, 228, 464, 506, 567
AccIII TCCGGA 1 cut(s) 331
AclWI GGATC 4 cut(s) 334, 347, 1113, 1126
AcoI YGGCCR 3 cut(s) 195, 264, 286
AcsI RAATTY 3 cut(s) 150, 316, 784
AcuI CTGAAG 1 cut(s) 257
AcyI GRCGYC 2 cut(s) 309, 440
AfaI GTAC 1 cut(s) 683
AfiI CCNNNNNNNGG 5 cut(s) 349, 536, 712, 833, 1071
AgsI TTSAA 3 cut(s) 155, 841, 880
AjnI CCWGG 3 cut(s) 13, 529, 1122
AjuI GAANNNNNNNTTGG 2 cut(s) 608, 640
AluBI AGCT 9 cut(s) 50, 134, 235, 292, 355, 599, 728, 949, 1085
AluI AGCT 9 cut(s) 50, 134, 235, 292, 355, 599, 728, 949, 1085
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 4 cut(s) 41, 48, 404, 986
AlwI GGATC 4 cut(s) 334, 347, 1113, 1126
Ama87I CYCGRG 2 cut(s) 51, 322
Aor13HI TCCGGA 1 cut(s) 331
AoxI GGCC 6 cut(s) 16, 190, 195, 264, 286, 477
ApeKI GCWGC 7 cut(s) 9, 186, 366, 599, 1016, 1061, 1082
ApoI RAATTY 3 cut(s) 150, 316, 784
ArsI GACNNNNNNTTYG 4 cut(s) 156, 188, 913, 945
AspLEI GCGC 4 cut(s) 202, 230, 506, 584
AspS9I GGNCC 5 cut(s) 17, 191, 361, 382, 824
AsuC2I CCSGG 7 cut(s) 194, 282, 323, 324, 835, 981, 1072
AsuHPI GGTGA 5 cut(s) 79, 286, 397, 643, 856
AsuII TTCGAA 3 cut(s) 252, 419, 731
AvaI CYCGRG 2 cut(s) 51, 322
AvaII GGWCC 3 cut(s) 361, 382, 824
BaeGI GKGCMC 1 cut(s) 986
BalI TGGCCA 1 cut(s) 266
BamHI GGATCC 2 cut(s) 339, 1118
BanII GRGCYC 2 cut(s) 357, 754
BauI CACGAG 2 cut(s) 521, 911
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 6 cut(s) 198, 353, 586, 1003, 1048, 1094
BccI CCATC 4 cut(s) 256, 806, 929, 953
BceAI ACGGC 5 cut(s) 222, 427, 559, 569, 700
BcgI CGANNNNNNTGC 4 cut(s) 581, 615, 721, 755
BciT130I CCWGG 3 cut(s) 15, 531, 1124
BcnI CCSGG 7 cut(s) 194, 282, 323, 324, 835, 981, 1072
BcoDI GTCTC 4 cut(s) 41, 48, 404, 986
BglII AGATCT 2 cut(s) 399, 450
Bme18I GGWCC 3 cut(s) 361, 382, 824
BmeT110I CYCGRG 2 cut(s) 51, 322
BmgT120I GGNCC 5 cut(s) 17, 191, 361, 382, 824
BmiI GGNNCC 7 cut(s) 341, 374, 535, 563, 825, 1069, 1120
BmsI GCATC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 882
Bpu14I TTCGAA 3 cut(s) 252, 419, 731
BpuMI CCSGG 7 cut(s) 194, 282, 323, 324, 835, 981, 1072
BsaHI GRCGYC 2 cut(s) 309, 440
BsaI GGTCTC 1 cut(s) 986
BsaWI WCCGGW 2 cut(s) 331, 384
BsaXI ACNNNNNCTCC 2 cut(s) 653, 683
Bsc4I CCNNNNNNNGG 5 cut(s) 349, 536, 712, 833, 1071
Bse118I RCCGGY 1 cut(s) 500
Bse1I ACTGG 3 cut(s) 376, 865, 996
BseAI TCCGGA 1 cut(s) 331
BseBI CCWGG 3 cut(s) 15, 531, 1124
BseGI GGATG 4 cut(s) 267, 817, 940, 952
BseLI CCNNNNNNNGG 5 cut(s) 349, 536, 712, 833, 1071
BseMII CTCAG 3 cut(s) 46, 410, 780
BseNI ACTGG 3 cut(s) 376, 865, 996
BseRI GAGGAG 1 cut(s) 674
BseSI GKGCMC 1 cut(s) 986
BseX3I CGGCCG 1 cut(s) 195
BseXI GCAGC 6 cut(s) 198, 353, 586, 1003, 1048, 1094
BsgI GTGCAG 1 cut(s) 1049
Bsh1236I CGCG 5 cut(s) 200, 228, 464, 506, 567
Bsh1285I CGRYCG 1 cut(s) 198
BshFI GGCC 6 cut(s) 18, 192, 197, 266, 288, 479
BsiEI CGRYCG 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 2 cut(s) 51, 322
BslFI GGGAC 2 cut(s) 406, 728
BslI CCNNNNNNNGG 5 cut(s) 349, 536, 712, 833, 1071
BsmAI GTCTC 4 cut(s) 41, 48, 404, 986
BsmBI CGTCTC 2 cut(s) 48, 404
BsmFI GGGAC 2 cut(s) 406, 728
BsnI GGCC 6 cut(s) 18, 192, 197, 266, 288, 479
Bso31I GGTCTC 1 cut(s) 986
BsoBI CYCGRG 2 cut(s) 51, 322
Bsp119I TTCGAA 3 cut(s) 252, 419, 731
Bsp1286I GDGCHC 3 cut(s) 357, 754, 986
Bsp13I TCCGGA 1 cut(s) 331
Bsp143I GATC 7 cut(s) 339, 399, 450, 633, 768, 1113, 1118
Bsp19I CCATGG 1 cut(s) 141
BspANI GGCC 6 cut(s) 18, 192, 197, 266, 288, 479
BspCNI CTCAG 3 cut(s) 45, 409, 781
BspEI TCCGGA 1 cut(s) 331
BspFNI CGCG 5 cut(s) 200, 228, 464, 506, 567
BspLI GGNNCC 7 cut(s) 341, 374, 535, 563, 825, 1069, 1120
BspPI GGATC 4 cut(s) 334, 347, 1113, 1126
BspT104I TTCGAA 3 cut(s) 252, 419, 731
BspTNI GGTCTC 1 cut(s) 986
BsrBI CCGCTC 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 500
BsrI ACTGG 3 cut(s) 376, 865, 996
BssAI RCCGGY 1 cut(s) 500
BssMI GATC 7 cut(s) 339, 399, 450, 633, 768, 1113, 1118
BssNI GRCGYC 2 cut(s) 309, 440
BssSI CACGAG 2 cut(s) 521, 911
BssT1I CCWWGG 4 cut(s) 126, 141, 168, 624
Bst2BI CACGAG 2 cut(s) 521, 911
Bst2UI CCWGG 3 cut(s) 15, 531, 1124
Bst4CI ACNGT 3 cut(s) 415, 472, 487
Bst6I CTCTTC 1 cut(s) 254
BstACI GRCGYC 2 cut(s) 309, 440
BstBI TTCGAA 3 cut(s) 252, 419, 731
BstC8I GCNNGC 5 cut(s) 226, 290, 580, 918, 1050
BstDEI CTNAG 5 cut(s) 32, 396, 765, 789, 924
BstDSI CCRYGG 2 cut(s) 141, 565
BstF5I GGATG 4 cut(s) 267, 817, 940, 952
BstFNI CGCG 5 cut(s) 200, 228, 464, 506, 567
BstHHI GCGC 4 cut(s) 202, 230, 506, 584
BstKTI GATC 7 cut(s) 342, 402, 453, 636, 771, 1116, 1121
BstMAI GTCTC 4 cut(s) 41, 48, 404, 986
BstMBI GATC 7 cut(s) 339, 399, 450, 633, 768, 1113, 1118
BstMCI CGRYCG 1 cut(s) 198
BstNI CCWGG 3 cut(s) 15, 531, 1124
BstSLI GKGCMC 1 cut(s) 986
BstUI CGCG 5 cut(s) 200, 228, 464, 506, 567
BstV1I GCAGC 6 cut(s) 198, 353, 586, 1003, 1048, 1094
BstX2I RGATCY 4 cut(s) 339, 399, 450, 1118
BstYI RGATCY 4 cut(s) 339, 399, 450, 1118
BstZI CGGCCG 1 cut(s) 195
BsuRI GGCC 6 cut(s) 18, 192, 197, 266, 288, 479
BtgI CCRYGG 2 cut(s) 141, 565
BtgZI GCGATG 1 cut(s) 259
BtsCI GGATG 4 cut(s) 267, 817, 940, 952
BtsIMutI CAGTG 1 cut(s) 1003
Cac8I GCNNGC 5 cut(s) 226, 290, 580, 918, 1050
CfoI GCGC 4 cut(s) 202, 230, 506, 584
Cfr10I RCCGGY 1 cut(s) 500
Cfr13I GGNCC 5 cut(s) 17, 191, 361, 382, 824
Cfr42I CCGCGG 1 cut(s) 568
Cfr9I CCCGGG 1 cut(s) 322
CpoI CGGWCCG 1 cut(s) 382
CseI GACGC 3 cut(s) 65, 448, 470
Csp6I GTAC 1 cut(s) 682
CspI CGGWCCG 1 cut(s) 382
CviAII CATG 4 cut(s) 142, 349, 358, 1078
CviQI GTAC 1 cut(s) 682
DdeI CTNAG 5 cut(s) 32, 396, 765, 789, 924
DpnI GATC 7 cut(s) 341, 401, 452, 635, 770, 1115, 1120
DpnII GATC 7 cut(s) 339, 399, 450, 633, 768, 1113, 1118
DrdI GACNNNNNNGTC 1 cut(s) 488
DseDI GACNNNNNNGTC 1 cut(s) 488
EaeI YGGCCR 3 cut(s) 195, 264, 286
EagI CGGCCG 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 254
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 2 cut(s) 127, 565
Ecl136II GAGCTC 1 cut(s) 355
EclXI CGGCCG 1 cut(s) 195
Eco130I CCWWGG 4 cut(s) 126, 141, 168, 624
Eco24I GRGCYC 2 cut(s) 357, 754
Eco31I GGTCTC 1 cut(s) 986
Eco47I GGWCC 3 cut(s) 361, 382, 824
Eco52I CGGCCG 1 cut(s) 195
Eco53kI GAGCTC 1 cut(s) 355
Eco57I CTGAAG 1 cut(s) 257
Eco88I CYCGRG 2 cut(s) 51, 322
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 1 cut(s) 824
EcoRI GAATTC 1 cut(s) 784
EcoRII CCWGG 3 cut(s) 13, 529, 1122
EcoT14I CCWWGG 4 cut(s) 126, 141, 168, 624
EcoT38I GRGCYC 2 cut(s) 357, 754
ErhI CCWWGG 4 cut(s) 126, 141, 168, 624
Esp3I CGTCTC 2 cut(s) 48, 404
FaeI CATG 4 cut(s) 145, 352, 361, 1081
FaiI YATR 9 cut(s) 143, 217, 350, 359, 656, 740, 966, 1044, 1079
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FaqI GGGAC 2 cut(s) 406, 728
FatI CATG 4 cut(s) 141, 348, 357, 1077
FauI CCCGC 2 cut(s) 233, 560
FblI GTMKAC 1 cut(s) 426
FokI GGATG 4 cut(s) 274, 824, 939, 947
FriOI GRGCYC 2 cut(s) 357, 754
GlaI GCGC 4 cut(s) 201, 229, 505, 583
GsuI CTGGAG 1 cut(s) 882
HaeIII GGCC 6 cut(s) 18, 192, 197, 266, 288, 479
HgaI GACGC 3 cut(s) 65, 448, 470
HhaI GCGC 4 cut(s) 202, 230, 506, 584
Hin1I GRCGYC 2 cut(s) 309, 440
Hin1II CATG 4 cut(s) 145, 352, 361, 1081
Hin6I GCGC 4 cut(s) 200, 228, 504, 582
HinP1I GCGC 4 cut(s) 200, 228, 504, 582
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 3 cut(s) 66, 394, 647
HphI GGTGA 5 cut(s) 79, 286, 397, 643, 856
Hpy166II GTNNAC 3 cut(s) 87, 427, 697
Hpy8I GTNNAC 3 cut(s) 87, 427, 697
HpyAV CCTTC 4 cut(s) 248, 814, 835, 874
HpyCH4III ACNGT 3 cut(s) 415, 472, 487
HpyCH4IV ACGT 2 cut(s) 309, 668
HpyCH4V TGCA 5 cut(s) 177, 742, 1030, 1077, 1108
HpyF3I CTNAG 5 cut(s) 32, 396, 765, 789, 924
HpySE526I ACGT 2 cut(s) 309, 668
Hsp92I GRCGYC 2 cut(s) 309, 440
Hsp92II CATG 4 cut(s) 145, 352, 361, 1081
HspAI GCGC 4 cut(s) 200, 228, 504, 582
Kpn2I TCCGGA 1 cut(s) 331
KspI CCGCGG 1 cut(s) 568
Kzo9I GATC 7 cut(s) 339, 399, 450, 633, 768, 1113, 1118
LmnI GCTCC 7 cut(s) 127, 352, 372, 539, 596, 607, 946
Lsp1109I GCAGC 6 cut(s) 198, 353, 586, 1003, 1048, 1094
LweI GCATC 1 cut(s) 186
MaeII ACGT 2 cut(s) 309, 668
MaeIII GTNAC 3 cut(s) 856, 908, 1054
MalI GATC 7 cut(s) 341, 401, 452, 635, 770, 1115, 1120
MbiI CCGCTC 1 cut(s) 122
MboI GATC 7 cut(s) 339, 399, 450, 633, 768, 1113, 1118
MboII GAAGA 5 cut(s) 93, 241, 394, 745, 859
MfeI CAATTG 1 cut(s) 941
MflI RGATCY 4 cut(s) 339, 399, 450, 1118
MhlI GDGCHC 3 cut(s) 357, 754, 986
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 5 cut(s) 150, 243, 316, 784, 941
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 3 cut(s) 75, 388, 641
MmeI TCCRAC 3 cut(s) 43, 239, 330
Mox20I TGGCCA 1 cut(s) 266
MroI TCCGGA 1 cut(s) 331
MscI TGGCCA 1 cut(s) 266
MseI TTAA 2 cut(s) 447, 969
MslI CAYNNNNRTG 1 cut(s) 957
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 3 cut(s) 189, 366, 567
MunI CAATTG 1 cut(s) 941
MvaI CCWGG 3 cut(s) 15, 531, 1124
MvnI CGCG 5 cut(s) 200, 228, 464, 506, 567
NciI CCSGG 7 cut(s) 194, 282, 323, 324, 835, 981, 1072
NcoI CCATGG 1 cut(s) 141
NdeII GATC 7 cut(s) 339, 399, 450, 633, 768, 1113, 1118
NlaIII CATG 4 cut(s) 145, 352, 361, 1081
NlaIV GGNNCC 7 cut(s) 341, 374, 535, 563, 825, 1069, 1120
NmeAIII GCCGAG 3 cut(s) 256, 324, 629
NmuCI GTSAC 2 cut(s) 856, 908
NspV TTCGAA 3 cut(s) 252, 419, 731
PaeR7I CTCGAG 1 cut(s) 51
PcsI WCGNNNNNNNCGW 3 cut(s) 440, 468, 642
PflFI GACNNNGTC 1 cut(s) 485
PleI GAGTC 3 cut(s) 74, 388, 641
PpsI GAGTC 3 cut(s) 74, 388, 641
PpuMI RGGWCCY 1 cut(s) 824
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 824
Psp6I CCWGG 3 cut(s) 13, 529, 1122
PspGI CCWGG 3 cut(s) 13, 529, 1122
PspN4I GGNNCC 7 cut(s) 341, 374, 535, 563, 825, 1069, 1120
PspPI GGNCC 5 cut(s) 17, 191, 361, 382, 824
PspPPI RGGWCCY 1 cut(s) 824
PsuI RGATCY 4 cut(s) 339, 399, 450, 1118
PsyI GACNNNGTC 1 cut(s) 485
RsaI GTAC 1 cut(s) 683
RsaNI GTAC 1 cut(s) 682
RseI CAYNNNNRTG 1 cut(s) 957
Rsr2I CGGWCCG 1 cut(s) 382
RsrII CGGWCCG 1 cut(s) 382
SacI GAGCTC 1 cut(s) 357
SacII CCGCGG 1 cut(s) 568
SalI GTCGAC 1 cut(s) 425
SaqAI TTAA 2 cut(s) 447, 969
Sau3AI GATC 7 cut(s) 339, 399, 450, 633, 768, 1113, 1118
Sau96I GGNCC 5 cut(s) 17, 191, 361, 382, 824
SchI GAGTC 3 cut(s) 75, 388, 641
SduI GDGCHC 3 cut(s) 357, 754, 986
SfaNI GCATC 1 cut(s) 186
Sfr274I CTCGAG 1 cut(s) 51
Sfr303I CCGCGG 1 cut(s) 568
SfuI TTCGAA 3 cut(s) 252, 419, 731
SgrAI CRCCGGYG 1 cut(s) 500
SgrBI CCGCGG 1 cut(s) 568
SinI GGWCC 3 cut(s) 361, 382, 824
SlaI CTCGAG 1 cut(s) 51
SmaI CCCGGG 1 cut(s) 324
SmiMI CAYNNNNRTG 1 cut(s) 957
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 5 cut(s) 150, 243, 316, 784, 941
SstI GAGCTC 1 cut(s) 357
StyI CCWWGG 4 cut(s) 126, 141, 168, 624
TaaI ACNGT 3 cut(s) 415, 472, 487
TaiI ACGT 2 cut(s) 312, 671
TaqI TCGA 8 cut(s) 52, 252, 312, 419, 426, 434, 474, 731
TaqII GACCGA 1 cut(s) 370
TasI AATT 5 cut(s) 150, 243, 316, 784, 941
Tru1I TTAA 2 cut(s) 447, 969
Tru9I TTAA 2 cut(s) 447, 969
TscAI CASTG 1 cut(s) 1003
TseFI GTSAC 2 cut(s) 856, 908
TseI GCWGC 7 cut(s) 9, 186, 366, 599, 1016, 1061, 1082
Tsp45I GTSAC 2 cut(s) 856, 908
TspDTI ATGAA 1 cut(s) 941
TspGWI ACGGA 2 cut(s) 609, 1004
TspMI CCCGGG 1 cut(s) 322
TspRI CASTG 1 cut(s) 1003
Tth111I GACNNNGTC 1 cut(s) 485
VpaK11BI GGWCC 3 cut(s) 361, 382, 824
XapI RAATTY 3 cut(s) 150, 316, 784
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XhoI CTCGAG 1 cut(s) 51
XmaI CCCGGG 1 cut(s) 322
XmiI GTMKAC 1 cut(s) 426
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.