Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010901

Physical Location & Seq

Genomic Coordinates Forward (+)

16842174 .. 16844359

Gene Structure 2186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGAACTGTGTGAGTCGTTTAAAGTGTTTGATAAGCAAAGCACGAAGCTTTGCACGGCTTGGTGGTGAATCCACTCTCTCTCAACCGCCGTCTCTCGCCTCCGCCGCGTTTTCTTCATCCGCCGTCATGAATGGTCTCGAAACTCACAACACAAGGCTCTGTATCGTAGGAAGTGGCCCAGCGGCACACACGGCGGCGATTTACGCAGCTAGGGCTGAACTTAAACCTCTTCTCTTCGAAGGATGGATGGCTAACGACATCGCTCCCGGTGGTCAACTAACAACCACCACCGACGTCGAGAATTTCCCCGGATTTCCAGAAGGTATTCTCGGAGTAGAGCTCACTGACAAATTCCGTAAACAATCGGAGCGATTCGGTACTACGATATTTACAGAGACGGTGACGAAAGTCGATTTCTCTTCGAAACCGTTTAAGCTATTCACAGATTCAAAAGCCATTCTCGCTGACGCTGTGATTCTCGCTACTGGAGCTGTGGCTAAGCGGCTTAGCTTCGTTGGATCTGGTGAAGCTTCTGGAGGTTTCTGGAACCGTGGAATCTCCGCTTGTGCTGTTTGCGACGGAGCTGCTCCGATATTCCGTAACAAACCTCTTGCGGTGATCGGTGGAGGCGATTCAGCAATGGAAGAAGCAAACTTTCTTACAAAATATGGATCTAAAGTGTATATAATCCATAGGAGAGATGCTTTTAGAGCGTCTAAGATTATGCAGCAGCGAGCTTTGTCTAATCCTAAGATTGATGTGATTTGGAACTCGTCTGTTGTGGAAGCTTATGGAGATGGAGAAAGAGATGTGCTTGGAGGATTGAAAGTGAAGAATGTGGTTACCGGAGATGTTTCTGATTTAAAAGTTTCTGGATTGTTCTTTGCTATTGGTCATGAGCCAGCTACCAAGTTTTTGGATGGTGGTGTTGAGTTAGATTCGGATGGTTATGTTGTCACGAAGCCTGGTACTACACAGACTAGCGTTCCCGGAGTTTTCGCTGCGGGTGATGTTCAGGATAAGAAGTATAGGCAAGCCATCACTGCTGCAGGAACTGGGTGCATGGCAGCTTTGGATGCAGAGCATTACTTACAAGAGATTGGATCTCAGCAAGGTAAGAGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009536 GO:0009636 GO:0009941 GO:0009987 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051302 GO:0051716 GO:0051781 GO:0055114 GO:0065007 GO:0070887 GO:0097237 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00450 map00450

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

375

Amino Acids

39.63

Weight (kDa)

6.96

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	52 - 353	8.1e-50	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3	PF13738	125 - 336	2.9e-17	Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox	PF00070	204 - 269	2e-15	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010901)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17420 AT2G17420 AT4G35460
fragaria_vesca	FvH4_1g09960
malus_domestica	MD02G1108200.v1.1 MD15G1227600.v1.1
prunus_persica	Prupe.7G187600_v2.0.a1 Prupe.7G187600_v2.0.a1
pyrus_communis	pycom02g08690 pycom15g20260
rosa_chinensis	RchiOBHm_Chr2g0096751
rosa_laevigata	RLG00000016667
rosa_multiflora	Rmu_sc0004291.1_g000009 Rmu_ssc0000215.1_g000053
rosa_roxburghii	Rroxscaffold_2G00145350
rosa_rugosa	Rorug02G0060500
rosa_samantha	Rh2BG110100 Rh2CG112000 Rh2DG111400
rosa_wichuraiana	Rw2G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	297
AccII	CGCG	1 cut(s)	107
AclWI	GGATC	3 cut(s)	526, 679, 1111
AcsI	RAATTY	2 cut(s)	301, 350
AcyI	GRCGYC	1 cut(s)	294
AfaI	GTAC	2 cut(s)	379, 970
AgsI	TTSAA	2 cut(s)	450, 826
AjnI	CCWGG	1 cut(s)	964
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	3 cut(s)	96, 140, 389
AlwI	GGATC	3 cut(s)	526, 679, 1111
AlwNI	CAGNNNCTG	1 cut(s)	1055
AoxI	GGCC	1 cut(s)	175
ApeKI	GCWGC	7 cut(s)	206, 584, 727, 730, 1001, 1046, 1067
ApoI	RAATTY	2 cut(s)	301, 350
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	3 cut(s)	267, 309, 990
AsuHPI	GGTGA	5 cut(s)	77, 412, 536, 628, 1019
AsuII	TTCGAA	2 cut(s)	237, 422
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	7 cut(s)	218, 571, 739, 742, 988, 1033, 1079
BccI	CCATC	6 cut(s)	237, 241, 791, 914, 938, 1046
BceAI	ACGGC	4 cut(s)	71, 73, 107, 207
BcgI	CGANNNNNNTGC	2 cut(s)	566, 600
BciT130I	CCWGG	1 cut(s)	966
BcnI	CCSGG	3 cut(s)	267, 309, 990
BcoDI	GTCTC	3 cut(s)	96, 140, 389
BfaI	CTAG	2 cut(s)	210, 981
BfmI	CTRYAG	1 cut(s)	1047
BlpI	GCTNAGC	2 cut(s)	498, 506
Bme1390I	CCNGG	4 cut(s)	267, 309, 966, 990
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	548
BmrFI	CCNGG	4 cut(s)	267, 309, 966, 990
BmrI	ACTGGG	1 cut(s)	1065
BmsI	GCATC	2 cut(s)	691, 1066
BmuI	ACTGGG	1 cut(s)	1065
BoxI	GACNNNNGTC	1 cut(s)	407
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpmI	CTGGAG	2 cut(s)	507, 555
Bpu1102I	GCTNAGC	2 cut(s)	498, 506
Bpu14I	TTCGAA	2 cut(s)	237, 422
BpuMI	CCSGG	3 cut(s)	267, 309, 990
BsaHI	GRCGYC	1 cut(s)	294
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	307, 550
BsaWI	WCCGGW	1 cut(s)	845
Bse1I	ACTGG	2 cut(s)	490, 1060
Bse3DI	GCAATG	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	966
BseDI	CCNNGG	2 cut(s)	307, 550
BseGI	GGATG	6 cut(s)	116, 248, 252, 925, 949, 1081
BseMI	GCAATG	1 cut(s)	645
BseMII	CTCAG	1 cut(s)	1121
BseNI	ACTGG	2 cut(s)	490, 1060
BseXI	GCAGC	7 cut(s)	218, 571, 739, 742, 988, 1033, 1079
BseYI	CCCAGC	1 cut(s)	178
Bsh1236I	CGCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	4 cut(s)	267, 309, 846, 990
BsmAI	GTCTC	3 cut(s)	96, 140, 389
BsmBI	CGTCTC	2 cut(s)	96, 389
BsnI	GGCC	1 cut(s)	177
Bso31I	GGTCTC	1 cut(s)	140
Bsp119I	TTCGAA	2 cut(s)	237, 422
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp143I	GATC	4 cut(s)	518, 618, 671, 1103
Bsp1720I	GCTNAGC	2 cut(s)	498, 506
BspANI	GGCC	1 cut(s)	177
BspCNI	CTCAG	1 cut(s)	1120
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	2 cut(s)	126, 895
BspLI	GGNNCC	1 cut(s)	548
BspMAI	CTGCAG	1 cut(s)	1051
BspPI	GGATC	3 cut(s)	526, 679, 1111
BspT104I	TTCGAA	2 cut(s)	237, 422
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	645
BsrI	ACTGG	2 cut(s)	490, 1060
BssECI	CCNNGG	2 cut(s)	307, 550
BssMI	GATC	4 cut(s)	518, 618, 671, 1103
BssNI	GRCGYC	1 cut(s)	294
Bst2UI	CCWGG	1 cut(s)	966
Bst4CI	ACNGT	4 cut(s)	8, 400, 429, 551
Bst6I	CTCTTC	3 cut(s)	234, 239, 424
BstACI	GRCGYC	1 cut(s)	294
BstBI	TTCGAA	2 cut(s)	237, 422
BstC8I	GCNNGC	3 cut(s)	735, 903, 1035
BstDEI	CTNAG	5 cut(s)	498, 506, 717, 750, 1107
BstDSI	CCRYGG	1 cut(s)	550
BstEII	GGTNACC	1 cut(s)	841
BstF5I	GGATG	6 cut(s)	116, 248, 252, 925, 949, 1081
BstFNI	CGCG	1 cut(s)	107
BstKTI	GATC	4 cut(s)	521, 621, 674, 1106
BstMAI	GTCTC	3 cut(s)	96, 140, 389
BstMBI	GATC	4 cut(s)	518, 618, 671, 1103
BstMWI	GCNNNNNNNGC	9 cut(s)	104, 191, 203, 212, 461, 488, 710, 1043, 1076
BstNI	CCWGG	1 cut(s)	966
BstPAI	GACNNNNGTC	1 cut(s)	407
BstPI	GGTNACC	1 cut(s)	841
BstSCI	CCNGG	4 cut(s)	265, 307, 964, 988
BstSFI	CTRYAG	1 cut(s)	1047
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	7 cut(s)	218, 571, 739, 742, 988, 1033, 1079
BstX2I	RGATCY	3 cut(s)	518, 671, 1103
BstXI	CCANNNNNNTGG	1 cut(s)	916
BstYI	RGATCY	3 cut(s)	518, 671, 1103
BsuRI	GGCC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	550
BtgZI	GCGATG	1 cut(s)	244
BtsCI	GGATG	6 cut(s)	116, 248, 252, 925, 949, 1081
BtsI	GCAGTG	1 cut(s)	1041
BtsIMutI	CAGTG	2 cut(s)	342, 1041
Cac8I	GCNNGC	3 cut(s)	735, 903, 1035
CaiI	CAGNNNCTG	1 cut(s)	1055
CciI	TCATGA	2 cut(s)	126, 895
Cfr13I	GGNCC	1 cut(s)	176
CseI	GACGC	2 cut(s)	476, 702
Csp6I	GTAC	2 cut(s)	378, 969
CviAII	CATG	3 cut(s)	127, 896, 1063
CviQI	GTAC	2 cut(s)	378, 969
DdeI	CTNAG	5 cut(s)	498, 506, 717, 750, 1107
DpnI	GATC	4 cut(s)	520, 620, 673, 1105
DpnII	GATC	4 cut(s)	518, 618, 671, 1103
DraI	TTTAAA	2 cut(s)	21, 864
Eam1104I	CTCTTC	3 cut(s)	234, 239, 424
EarI	CTCTTC	3 cut(s)	234, 239, 424
EciI	GGCGGA	2 cut(s)	91, 109
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	140
Eco53kI	GAGCTC	1 cut(s)	340
Eco91I	GGTNACC	1 cut(s)	841
EcoICRI	GAGCTC	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	841
EcoRII	CCWGG	1 cut(s)	964
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	2 cut(s)	96, 389
FaeI	CATG	3 cut(s)	130, 899, 1066
FatI	CATG	3 cut(s)	126, 895, 1062
FauI	CCCGC	1 cut(s)	997
FokI	GGATG	6 cut(s)	103, 255, 259, 932, 956, 1088
FriOI	GRGCYC	1 cut(s)	342
FspBI	CTAG	2 cut(s)	210, 981
GsaI	CCCAGC	1 cut(s)	182
GsuI	CTGGAG	2 cut(s)	507, 555
HaeIII	GGCC	1 cut(s)	177
HapII	CCGG	4 cut(s)	267, 309, 846, 990
HgaI	GACGC	2 cut(s)	476, 702
Hin1I	GRCGYC	1 cut(s)	294
Hin1II	CATG	3 cut(s)	130, 899, 1066
HincII	GTYRAC	1 cut(s)	275
HindII	GTYRAC	1 cut(s)	275
HindIII	AAGCTT	3 cut(s)	46, 528, 786
HinfI	GANTC	8 cut(s)	13, 68, 372, 446, 475, 555, 632, 938
HpaII	CCGG	4 cut(s)	267, 309, 846, 990
HphI	GGTGA	5 cut(s)	77, 412, 536, 628, 1019
Hpy166II	GTNNAC	2 cut(s)	275, 359
Hpy188I	TCNGA	5 cut(s)	332, 367, 591, 859, 943
Hpy8I	GTNNAC	2 cut(s)	275, 359
Hpy99I	CGWCG	3 cut(s)	296, 299, 581
HpyAV	CCTTC	2 cut(s)	233, 314
HpyCH4III	ACNGT	4 cut(s)	8, 400, 429, 551
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	5 cut(s)	53, 727, 1049, 1062, 1079
HpyF10VI	GCNNNNNNNGC	9 cut(s)	104, 191, 203, 212, 461, 488, 710, 1043, 1076
HpyF3I	CTNAG	5 cut(s)	498, 506, 717, 750, 1107
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	294
Hsp92II	CATG	3 cut(s)	130, 899, 1066
Kzo9I	GATC	4 cut(s)	518, 618, 671, 1103
LmnI	GCTCC	5 cut(s)	268, 367, 488, 581, 592
Lsp1109I	GCAGC	7 cut(s)	218, 571, 739, 742, 988, 1033, 1079
LweI	GCATC	2 cut(s)	691, 1066
MaeI	CTAG	2 cut(s)	210, 981
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	4 cut(s)	400, 599, 841, 955
MalI	GATC	4 cut(s)	520, 620, 673, 1105
MboI	GATC	4 cut(s)	518, 618, 671, 1103
MboII	GAAGA	6 cut(s)	105, 221, 226, 411, 656, 844
MflI	RGATCY	3 cut(s)	518, 671, 1103
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	2 cut(s)	301, 350
MlyI	GAGTC	1 cut(s)	22
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	6 cut(s)	109, 237, 530, 618, 620, 812
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	4 cut(s)	20, 222, 432, 863
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	4 cut(s)	267, 309, 846, 990
MspR9I	CCNGG	4 cut(s)	267, 309, 966, 990
MvaI	CCWGG	1 cut(s)	966
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	9 cut(s)	104, 191, 203, 212, 461, 488, 710, 1043, 1076
NciI	CCSGG	3 cut(s)	267, 309, 990
NdeII	GATC	4 cut(s)	518, 618, 671, 1103
NlaIII	CATG	3 cut(s)	130, 899, 1066
NlaIV	GGNNCC	1 cut(s)	548
NmuCI	GTSAC	2 cut(s)	400, 955
NspV	TTCGAA	2 cut(s)	237, 422
PagI	TCATGA	2 cut(s)	126, 895
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	7 cut(s)	68, 372, 446, 475, 555, 632, 938
PfoI	TCCNGGA	1 cut(s)	988
PleI	GAGTC	1 cut(s)	21
PpsI	GAGTC	1 cut(s)	21
PshAI	GACNNNNGTC	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	964
PspEI	GGTNACC	1 cut(s)	841
PspFI	CCCAGC	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	964
PspN4I	GGNNCC	1 cut(s)	548
PspPI	GGNCC	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	1051
PstNI	CAGNNNCTG	1 cut(s)	1055
PsuI	RGATCY	3 cut(s)	518, 671, 1103
RsaI	GTAC	2 cut(s)	379, 970
RsaNI	GTAC	2 cut(s)	378, 969
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	4 cut(s)	20, 222, 432, 863
Sau3AI	GATC	4 cut(s)	518, 618, 671, 1103
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	22
ScrFI	CCNGG	4 cut(s)	267, 309, 966, 990
SduI	GDGCHC	1 cut(s)	342
SfaNI	GCATC	2 cut(s)	691, 1066
SfcI	CTRYAG	1 cut(s)	1047
SfuI	TTCGAA	2 cut(s)	237, 422
Sse9I	AATT	2 cut(s)	301, 350
SspMI	CTAG	2 cut(s)	210, 981
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	4 cut(s)	265, 307, 964, 988
TaaI	ACNGT	4 cut(s)	8, 400, 429, 551
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	5 cut(s)	138, 237, 297, 411, 422
TasI	AATT	2 cut(s)	301, 350
TauI	GCSGC	4 cut(s)	107, 185, 197, 505
TfiI	GAWTC	7 cut(s)	68, 372, 446, 475, 555, 632, 938
Tru1I	TTAA	4 cut(s)	20, 222, 432, 863
Tru9I	TTAA	4 cut(s)	20, 222, 432, 863
TscAI	CASTG	2 cut(s)	349, 1048
TseFI	GTSAC	2 cut(s)	400, 955
TseI	GCWGC	7 cut(s)	206, 584, 727, 730, 1001, 1046, 1067
Tsp45I	GTSAC	2 cut(s)	400, 955
TspDTI	ATGAA	3 cut(s)	17, 105, 143
TspGWI	ACGGA	3 cut(s)	344, 587, 594
TspRI	CASTG	2 cut(s)	349, 1048
XapI	RAATTY	2 cut(s)	301, 350
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	210, 981
ZraI	GACGTC	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.