Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011886

Physical Location & Seq

Genomic Coordinates Forward (+)

7666548 .. 7668065

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G17630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCGGCGTCAACGAACTCATTCCTCATCGGAAACCAAACCCAAATCCCTTCTTTGAAACCCAAATCAATATCCCAATCCTTTATCCACTTCACTAAACCCAACACCATCAACCTCACCACCCGAACCAAATCCGTTTCAATCCGATGCGCTTCCGCTTCAACCACCGTCGGATCCGAGCAGCGAGTCATCAATTTCGCCGCAGGTCCAGCCGCATTACCGGAAAACGTCCTCCTCAAAGCTCAATCAGATCTCTATAACTGGCGTGGATCTGGTATGAGTGTTATGGAGATGAGTCATCGCGGTAAAGAGTTTCTCTCAATCATTCAAAAAGCTGAATCTGATCTCCGTCAGCTTCTCGAGATTCCATCGGAATATTCCGTTTTGTTCTTACAAGGTGGTGCCACTACTCAATTCGCTGCTTTACCTCTCAATCTCTGTAAATCTGATGATTCCGTTGATTACATTGTTACTGGATCTTGGGGAGATAAAGCTTTTAAGGAAGCTAAGAAATATTGTAACCCTAAAGTGATTTGGTCTGGTAAATCTGAGAAATATACTAAAGTTCCAACCTTTGATGGATTGGAGCAGAGTTCGGACGCCAAGTATTTGCATATATGCGCCAATGAGACTATTCATGGTGTTGAATTTAAAGATTATCCTCTTGTTGAAAACCCTGATGGTGTTCTTATTGCTGATATGTCTTCGAATTTCTGTTCTAAGCCGGTGGATGTATCGAAGTTCGGTGTGATTTACGCTGGTGCTCAGAAGAATGTTGGTCCTTCTGGTGTCACCATTGTGATCATTCGAAAGGATTTGATTGGGAATGCTAGAGATATAACTCCGGTGATGCTTGATTACAAGATTCATGATGAGAACAGCTCGTTGTATAACACGCCACCGTGTTTCGGGATTTATATGTGTGGTCTTGTGTTTGATGATTTGTTGGAGCAAGGTGGTTTGAAGGAAGTGGAGAAGAAGAACCAGAGGAAAGCTGAGTTGTTGTACAATGCGATTGATGAGAGTAGAGGGTTTTTCAGGTGTCCTGTTGAGAAGTCTGTGAGGTCTTTGATGAATGTTCCTTTTACGTTGGAGAAATCGGAGTTGGAAGCTGAGTTTATTAAAGAAGCTGCTAAGGAGAAGATGGTGCAGCTTAAGGGACATAGATCAGTGGGAGGTATGAGAGCTTCTATTTACAATGCGATGCCATTGGCTGGTGTCGAAAAGCTTGTTGCTTTCATGAAAGATTTTCAGGCAAGGCATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0004648 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009555 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016053 GO:0016311 GO:0016740 GO:0016769 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0042221 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko00750 ko01100 ko01120 ko01130 ko01200 ko01230 ko03018 map00260 map00680 map00750 map01100 map01120 map01130 map01200 map01230 map03018

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

422

Amino Acids

46.63

Weight (kDa)

8.26

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	64 - 410	3e-48	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17630 AT4G35630
fragaria_vesca	FvH4_1g10530
malus_domestica	MD02G1119200.v1.1 MD15G1233200.v1.1
prunus_persica	Prupe.7G180700_v2.0.a1
pyrus_communis	pycom02g09290 pycom15g20770
rosa_chinensis	RchiOBHm_Chr2g0097441
rosa_laevigata	RLG00000016725
rosa_multiflora	Rmu_co8132210.1_g000001 Rmu_sc0004220.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144690
rosa_rugosa	Rorug02G0067000
rosa_samantha	Rh2AG113400 Rh2BG116500 Rh2CG118500 Rh2DG117500
rosa_wichuraiana	Rw2G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	1214
AccII	CGCG	1 cut(s)	303
AciI	CCGC	5 cut(s)	5, 156, 201, 213, 303
AclWI	GGATC	4 cut(s)	168, 181, 277, 484
AcsI	RAATTY	2 cut(s)	647, 709
AcyI	GRCGYC	2 cut(s)	8, 600
AfaI	GTAC	1 cut(s)	1007
AfiI	CCNNNNNNNGG	2 cut(s)	908, 1214
AflII	CTTAAG	1 cut(s)	1154
AgsI	TTSAA	7 cut(s)	58, 141, 162, 329, 647, 671, 964
AjuI	GAANNNNNNNTTGG	2 cut(s)	1088, 1120
AleI	CACNNNNGTG	1 cut(s)	797
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	1 cut(s)	623
AlwI	GGATC	4 cut(s)	168, 181, 277, 484
Ama87I	CYCGRG	1 cut(s)	359
ApeKI	GCWGC	4 cut(s)	181, 419, 1130, 1150
ApoI	RAATTY	2 cut(s)	647, 709
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	152, 623
AspS9I	GGNCC	2 cut(s)	206, 779
AsuHPI	GGTGA	3 cut(s)	109, 784, 859
AsuII	TTCGAA	2 cut(s)	707, 808
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	2 cut(s)	206, 779
BamHI	GGATCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	401
BarI	GAAGNNNNNNTAC	2 cut(s)	1171, 1203
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	4 cut(s)	193, 406, 1117, 1162
BccI	CCATC	5 cut(s)	116, 376, 572, 674, 1138
BclI	TGATCA	1 cut(s)	801
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	1 cut(s)	831
BfrI	CTTAAG	1 cut(s)	1154
BfuAI	ACCTGC	1 cut(s)	194
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	7 cut(s)	6, 182, 201, 213, 420, 1131, 1151
BlsI	GCNGC	7 cut(s)	7, 183, 202, 214, 421, 1132, 1152
Bme18I	GGWCC	2 cut(s)	206, 779
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	2 cut(s)	206, 779
BmiI	GGNNCC	2 cut(s)	175, 403
BmsI	GCATC	3 cut(s)	137, 840, 1194
BpiI	GAAGAC	1 cut(s)	696
BplI	GAGNNNNNCTC	4 cut(s)	302, 334, 866, 898
Bpu10I	CCTNAGC	1 cut(s)	1134
Bpu14I	TTCGAA	2 cut(s)	707, 808
BsaHI	GRCGYC	2 cut(s)	8, 600
BsaWI	WCCGGW	2 cut(s)	220, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	908, 1214
Bse118I	RCCGGY	1 cut(s)	724
Bse1I	ACTGG	2 cut(s)	266, 478
BseGI	GGATG	1 cut(s)	736
BseLI	CCNNNNNNNGG	2 cut(s)	908, 1214
BseMII	CTCAG	4 cut(s)	540, 779, 987, 1104
BseNI	ACTGG	2 cut(s)	266, 478
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	4 cut(s)	193, 406, 1117, 1162
BsgI	GTGCAG	1 cut(s)	1169
Bsh1236I	CGCG	1 cut(s)	303
BshNI	GGYRCC	1 cut(s)	401
BsiHKAI	GWGCWC	1 cut(s)	766
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	3 cut(s)	221, 725, 845
BslFI	GGGAC	1 cut(s)	1173
BslI	CCNNNNNNNGG	2 cut(s)	908, 1214
BsmAI	GTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	1173
BsmI	GAATGC	1 cut(s)	832
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	2 cut(s)	707, 808
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp1407I	TGTACA	1 cut(s)	1005
Bsp143I	GATC	7 cut(s)	173, 250, 269, 343, 476, 801, 1166
BspACI	CCGC	5 cut(s)	5, 156, 201, 213, 303
BspCNI	CTCAG	4 cut(s)	541, 778, 988, 1105
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	2 cut(s)	868, 1239
BspLI	GGNNCC	2 cut(s)	175, 403
BspMI	ACCTGC	1 cut(s)	194
BspPI	GGATC	4 cut(s)	168, 181, 277, 484
BspT104I	TTCGAA	2 cut(s)	707, 808
BspT107I	GGYRCC	1 cut(s)	401
BspTI	CTTAAG	1 cut(s)	1154
BsrFI	RCCGGY	1 cut(s)	724
BsrGI	TGTACA	1 cut(s)	1005
BsrI	ACTGG	2 cut(s)	266, 478
BssAI	RCCGGY	1 cut(s)	724
BssMI	GATC	7 cut(s)	173, 250, 269, 343, 476, 801, 1166
BssNI	GRCGYC	2 cut(s)	8, 600
Bst4CI	ACNGT	2 cut(s)	169, 903
BstACI	GRCGYC	2 cut(s)	8, 600
BstAFI	CTTAAG	1 cut(s)	1154
BstAPI	GCANNNNNTGC	1 cut(s)	1262
BstAUI	TGTACA	1 cut(s)	1005
BstBI	TTCGAA	2 cut(s)	707, 808
BstC8I	GCNNGC	1 cut(s)	1263
BstDEI	CTNAG	7 cut(s)	507, 549, 720, 765, 996, 1113, 1134
BstF5I	GGATG	1 cut(s)	736
BstFNI	CGCG	1 cut(s)	303
BstHHI	GCGC	2 cut(s)	152, 623
BstKTI	GATC	7 cut(s)	176, 253, 272, 346, 479, 804, 1169
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	7 cut(s)	173, 250, 269, 343, 476, 801, 1166
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 1262
BstNSI	RCATGY	1 cut(s)	1265
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	4 cut(s)	193, 406, 1117, 1162
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	4 cut(s)	173, 250, 269, 476
BstYI	RGATCY	4 cut(s)	173, 250, 269, 476
BtgZI	GCGATG	2 cut(s)	284, 1217
BtsCI	GGATG	1 cut(s)	736
BtsIMutI	CAGTG	1 cut(s)	1176
BveI	ACCTGC	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	1263
CciI	TCATGA	2 cut(s)	868, 1239
CfoI	GCGC	2 cut(s)	152, 623
Cfr10I	RCCGGY	1 cut(s)	724
Cfr13I	GGNCC	2 cut(s)	206, 779
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	1 cut(s)	1006
CviAII	CATG	4 cut(s)	638, 869, 1240, 1262
CviQI	GTAC	1 cut(s)	1006
DdeI	CTNAG	7 cut(s)	507, 549, 720, 765, 996, 1113, 1134
DpnI	GATC	7 cut(s)	175, 252, 271, 345, 478, 803, 1168
DpnII	GATC	7 cut(s)	173, 250, 269, 343, 476, 801, 1166
DraI	TTTAAA	1 cut(s)	652
Eco47I	GGWCC	2 cut(s)	206, 779
Eco88I	CYCGRG	1 cut(s)	359
FaeI	CATG	4 cut(s)	641, 872, 1243, 1265
FalI	AAGNNNNNCTT	1 cut(s)	1249
FaqI	GGGAC	1 cut(s)	1173
FatI	CATG	4 cut(s)	637, 868, 1239, 1261
FbaI	TGATCA	1 cut(s)	801
Fnu4HI	GCNGC	7 cut(s)	6, 182, 201, 213, 420, 1131, 1151
FokI	GGATG	1 cut(s)	743
Fsp4HI	GCNGC	7 cut(s)	6, 182, 201, 213, 420, 1131, 1151
FspBI	CTAG	1 cut(s)	831
GlaI	GCGC	2 cut(s)	151, 622
GluI	GCNGC	7 cut(s)	6, 182, 201, 213, 420, 1131, 1151
HapII	CCGG	3 cut(s)	221, 725, 845
HgaI	GACGC	1 cut(s)	608
HhaI	GCGC	2 cut(s)	152, 623
Hin1I	GRCGYC	2 cut(s)	8, 600
Hin1II	CATG	4 cut(s)	641, 872, 1243, 1265
Hin6I	GCGC	2 cut(s)	150, 621
HinP1I	GCGC	2 cut(s)	150, 621
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HindIII	AAGCTT	2 cut(s)	492, 1226
HinfI	GANTC	6 cut(s)	186, 295, 338, 364, 452, 865
HpaII	CCGG	3 cut(s)	221, 725, 845
HphI	GGTGA	3 cut(s)	109, 784, 859
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188III	TCNNGA	5 cut(s)	359, 361, 869, 910, 1240
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	60, 792, 958
HpyCH4III	ACNGT	2 cut(s)	169, 903
HpyCH4IV	ACGT	2 cut(s)	228, 1088
HpyCH4V	TGCA	2 cut(s)	613, 1150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 1262
HpyF3I	CTNAG	7 cut(s)	507, 549, 720, 765, 996, 1113, 1134
HpySE526I	ACGT	2 cut(s)	228, 1088
Hsp92I	GRCGYC	2 cut(s)	8, 600
Hsp92II	CATG	4 cut(s)	641, 872, 1243, 1265
HspAI	GCGC	2 cut(s)	150, 621
Ksp22I	TGATCA	1 cut(s)	801
Kzo9I	GATC	7 cut(s)	173, 250, 269, 343, 476, 801, 1166
LmnI	GCTCC	2 cut(s)	586, 949
Lsp1109I	GCAGC	4 cut(s)	193, 406, 1117, 1162
LweI	GCATC	3 cut(s)	137, 840, 1194
MaeI	CTAG	1 cut(s)	831
MaeII	ACGT	2 cut(s)	228, 1088
MaeIII	GTNAC	3 cut(s)	469, 518, 790
MalI	GATC	7 cut(s)	175, 252, 271, 345, 478, 803, 1168
MboI	GATC	7 cut(s)	173, 250, 269, 343, 476, 801, 1166
MboII	GAAGA	5 cut(s)	696, 781, 988, 991, 1153
MflI	RGATCY	4 cut(s)	173, 250, 269, 476
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	4 cut(s)	193, 413, 647, 709
MlyI	GAGTC	2 cut(s)	195, 304
MmeI	TCCRAC	5 cut(s)	151, 593, 927, 1071, 1086
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	4 cut(s)	498, 651, 1122, 1155
MslI	CAYNNNNRTG	1 cut(s)	797
MspCI	CTTAAG	1 cut(s)	1154
MspI	CCGG	3 cut(s)	221, 725, 845
Mva1269I	GAATGC	1 cut(s)	832
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	209, 1262
NdeII	GATC	7 cut(s)	173, 250, 269, 343, 476, 801, 1166
NlaIII	CATG	4 cut(s)	641, 872, 1243, 1265
NlaIV	GGNNCC	2 cut(s)	175, 403
NmuCI	GTSAC	1 cut(s)	790
NspI	RCATGY	1 cut(s)	1265
NspV	TTCGAA	2 cut(s)	707, 808
OliI	CACNNNNGTG	1 cut(s)	797
PaeI	GCATGC	1 cut(s)	1265
PaeR7I	CTCGAG	1 cut(s)	359
PagI	TCATGA	2 cut(s)	868, 1239
PctI	GAATGC	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	4 cut(s)	338, 364, 452, 865
PflMI	CCANNNNNTGG	1 cut(s)	1214
PkrI	GCNGC	7 cut(s)	7, 183, 202, 214, 421, 1132, 1152
PleI	GAGTC	2 cut(s)	194, 303
PpsI	GAGTC	2 cut(s)	194, 303
PspN4I	GGNNCC	2 cut(s)	175, 403
PspPI	GGNCC	2 cut(s)	206, 779
PsuI	RGATCY	4 cut(s)	173, 250, 269, 476
RsaI	GTAC	1 cut(s)	1007
RsaNI	GTAC	1 cut(s)	1006
RseI	CAYNNNNRTG	1 cut(s)	797
SaqAI	TTAA	4 cut(s)	498, 651, 1122, 1155
SatI	GCNGC	7 cut(s)	6, 182, 201, 213, 420, 1131, 1151
Sau3AI	GATC	7 cut(s)	173, 250, 269, 343, 476, 801, 1166
Sau96I	GGNCC	2 cut(s)	206, 779
SchI	GAGTC	2 cut(s)	195, 304
SduI	GDGCHC	1 cut(s)	766
SfaNI	GCATC	3 cut(s)	137, 840, 1194
Sfr274I	CTCGAG	1 cut(s)	359
SfuI	TTCGAA	2 cut(s)	707, 808
SinI	GGWCC	2 cut(s)	206, 779
SlaI	CTCGAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	797
SmlI	CTYRAG	2 cut(s)	359, 1154
SmoI	CTYRAG	2 cut(s)	359, 1154
SphI	GCATGC	1 cut(s)	1265
Sse9I	AATT	4 cut(s)	193, 413, 647, 709
SsiI	CCGC	5 cut(s)	5, 156, 201, 213, 303
SspI	AATATT	2 cut(s)	377, 515
SspMI	CTAG	1 cut(s)	831
TaaI	ACNGT	2 cut(s)	169, 903
TaiI	ACGT	2 cut(s)	231, 1091
TaqI	TCGA	5 cut(s)	360, 707, 737, 808, 1221
TasI	AATT	4 cut(s)	193, 413, 647, 709
TatI	WGTACW	1 cut(s)	1005
TauI	GCSGC	3 cut(s)	8, 203, 215
TfiI	GAWTC	4 cut(s)	338, 364, 452, 865
Tru1I	TTAA	4 cut(s)	498, 651, 1122, 1155
Tru9I	TTAA	4 cut(s)	498, 651, 1122, 1155
TscAI	CASTG	1 cut(s)	1176
TseFI	GTSAC	1 cut(s)	790
TseI	GCWGC	4 cut(s)	181, 419, 1130, 1150
Tsp45I	GTSAC	1 cut(s)	790
TspDTI	ATGAA	5 cut(s)	626, 857, 1088, 1228, 1256
TspGWI	ACGGA	4 cut(s)	124, 338, 370, 445
TspRI	CASTG	1 cut(s)	1176
Van91I	CCANNNNNTGG	1 cut(s)	1214
Vha464I	CTTAAG	1 cut(s)	1154
VpaK11BI	GGWCC	2 cut(s)	206, 779
XapI	RAATTY	2 cut(s)	647, 709
XceI	RCATGY	1 cut(s)	1265
XhoI	CTCGAG	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.