Rroxscaffold_2G00144690

Phosphoserine aminotransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
82612582 .. 82614566
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144690.1

Sequence Viewer

Length: 987 bp
ATGAGCGTCATGGAAATGAGCCACCGCGGCAAGGAATTCTCCTCCATAATCCAGAAGGCCGAGTCCGACCTCCGAACCCTCTTGAATATTCCCCAAGAATACTCCGTCCTCTTCCTCCAAGGCGGCGCCACCACCCAGTTCGCCGCGATCCCACTCAATCTGTGCAAGCCCGATGATAAAGTGGATTACTTGGTCACCGGGTCGTGGGGTGACAAGGCCTTCAAGGAGGCCCAGAAGTACAGCAAGCCCAAGGTGATCTGGTCCGGTAAGTCGGAAAAGTATACAAAGATTCCGGCGTTTGATGCTCTAGAGCAGACCCCAGATGCCAAGTACTTGCATATATGTGCTAATGAGACCATTCATGGGGTTGAGTTCAAAACCTACCCAACCCCCAAAAATGGGCTCTTGATTGCTGATATGTCCTCCAATTTTTGCTCCAAGCCTGTGGACGTTTCGAAATTCGGGATCATCTACGCCGGAGCCCAGAAGAATGTGGGGCCATCTGGGGTGACCATTGTGATCATCAGGAAGGATCTGATTGGAAATGCTCAGGAAGTCACACCAGTAATGCTGGATTACAAGATTCATGATGATAACAATTCGTTGTATAATACTCCTCCCTGCTATGGGATTTACATGTGTGGGCTTGTGTTTGAGGATTTGCTAGAGCAGGGCGGCTTGGCCGGGATTGAGAAGAAGAACAAGAAGAAGGCGGAGCTGTTGTACAATGCCATTGATGGGAGCAATGGGTTTTACAGGTGCCCGGTGGAGAAGTCGGTGAGGTCATTGATGAATGTGCCGTTTACGCTTGAGAAGTCGGAGTTGGAAGCCGAGTTTATCAAGGAGGCGGCTAAGGAGAAGATGGTGCAGCTCAAGGGGCATAGGTCAGTGGGGGGAATGAGGGCCTCTATATATAATGCTATGCCTTTGGCTGGGGTGGAGAAGTTGGTTGCTTTCATGAAGGACTTTCAGGCAAAGCATGCTTGA

Protein Analysis

328

Amino Acids

36.39

Weight (kDa)

8.33

Isoelectric Point (pI)

28.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aminotran_5 PF00266 5 - 316 2.5e-43 Aminotransferase class-V
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011886)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 125, 759
AccI GTMKAC 1 cut(s) 281
AccII CGCG 2 cut(s) 27, 146
AciI CCGC 7 cut(s) 25, 27, 123, 144, 675, 713, 848
AclWI GGATC 3 cut(s) 142, 473, 540
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 2 cut(s) 35, 458
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 3 cut(s) 239, 332, 725
AfiI CCNNNNNNNGG 9 cut(s) 31, 204, 363, 398, 399, 626, 627, 738, 932
AflIII ACRYGT 1 cut(s) 636
AgsI TTSAA 3 cut(s) 85, 223, 376
AjuI GAANNNNNNNTTGG 2 cut(s) 806, 838
AluBI AGCT 2 cut(s) 718, 871
AluI AGCT 2 cut(s) 718, 871
Alw26I GTCTC 1 cut(s) 347
AlwI GGATC 3 cut(s) 142, 473, 540
AoxI GGCC 6 cut(s) 57, 216, 228, 497, 681, 903
ApeKI GCWGC 1 cut(s) 868
ApoI RAATTY 2 cut(s) 35, 458
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 4 cut(s) 229, 261, 497, 903
AsuC2I CCSGG 3 cut(s) 199, 685, 764
AsuHPI GGTGA 5 cut(s) 187, 221, 265, 520, 790
AsuII TTCGAA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 764
BanI GGYRCC 2 cut(s) 125, 759
BanII GRGCYC 2 cut(s) 405, 484
BbvI GCAGC 1 cut(s) 880
BccI CCATC 3 cut(s) 508, 731, 856
BceAI ACGGC 1 cut(s) 784
BclI TGATCA 1 cut(s) 519
BcnI CCSGG 3 cut(s) 199, 685, 764
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 2 cut(s) 308, 665
BfoI RGCGCY 1 cut(s) 129
BglI GCCNNNNNGGC 1 cut(s) 27
BisI GCNGC 6 cut(s) 28, 124, 144, 676, 849, 869
BlsI GCNGC 6 cut(s) 29, 125, 145, 677, 850, 870
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 3 cut(s) 199, 685, 764
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 4 cut(s) 229, 261, 497, 903
BmiI GGNNCC 4 cut(s) 127, 481, 498, 761
BmrFI CCNGG 3 cut(s) 199, 685, 764
BmrI ACTGGG 1 cut(s) 130
BmsI GCATC 2 cut(s) 292, 313
BmuI ACTGGG 1 cut(s) 130
Bpu10I CCTNAGC 2 cut(s) 549, 852
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 2 cut(s) 830, 857
BpuMI CCSGG 3 cut(s) 199, 685, 764
BsaHI GRCGYC 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 25, 118, 249
BsaWI WCCGGW 1 cut(s) 263
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 9 cut(s) 31, 204, 363, 398, 399, 626, 627, 738, 932
Bse1I ACTGG 2 cut(s) 136, 563
Bse3DI GCAATG 1 cut(s) 751
BseDI CCNNGG 3 cut(s) 25, 118, 249
BseLI CCNNNNNNNGG 9 cut(s) 31, 204, 363, 398, 399, 626, 627, 738, 932
BseMI GCAATG 1 cut(s) 751
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 2 cut(s) 136, 563
BseRI GAGGAG 2 cut(s) 31, 606
BseSI GKGCMC 1 cut(s) 764
BseXI GCAGC 1 cut(s) 880
BseYI CCCAGC 1 cut(s) 932
BsgI GTGCAG 1 cut(s) 887
Bsh1236I CGCG 2 cut(s) 27, 146
BshFI GGCC 6 cut(s) 59, 218, 230, 499, 683, 905
BshNI GGYRCC 2 cut(s) 125, 759
BsiSI CCGG 6 cut(s) 198, 264, 293, 477, 684, 764
BslI CCNNNNNNNGG 9 cut(s) 31, 204, 363, 398, 399, 626, 627, 738, 932
BsmAI GTCTC 1 cut(s) 347
BsnI GGCC 6 cut(s) 59, 218, 230, 499, 683, 905
Bso31I GGTCTC 1 cut(s) 347
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 405, 484, 764
Bsp1407I TGTACA 1 cut(s) 723
Bsp143I GATC 5 cut(s) 147, 255, 465, 519, 532
BspACI CCGC 7 cut(s) 25, 27, 123, 144, 675, 713, 848
BspANI GGCC 6 cut(s) 59, 218, 230, 499, 683, 905
BspCNI CTCAG 1 cut(s) 562
BspFNI CGCG 2 cut(s) 27, 146
BspHI TCATGA 2 cut(s) 586, 957
BspLI GGNNCC 4 cut(s) 127, 481, 498, 761
BspPI GGATC 3 cut(s) 142, 473, 540
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 2 cut(s) 125, 759
BspTNI GGTCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 751
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 2 cut(s) 136, 563
BssECI CCNNGG 3 cut(s) 25, 118, 249
BssMI GATC 5 cut(s) 147, 255, 465, 519, 532
BssNAI GTATAC 1 cut(s) 282
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 2 cut(s) 118, 249
Bst1107I GTATAC 1 cut(s) 282
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 980
BstAUI TGTACA 1 cut(s) 723
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 167, 245, 981
BstDEI CTNAG 2 cut(s) 549, 852
BstDSI CCRYGG 1 cut(s) 25
BstEII GGTNACC 2 cut(s) 193, 508
BstFNI CGCG 2 cut(s) 27, 146
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 5 cut(s) 150, 258, 468, 522, 535
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 5 cut(s) 147, 255, 465, 519, 532
BstMWI GCNNNNNNNGC 5 cut(s) 27, 302, 805, 877, 980
BstNSI RCATGY 2 cut(s) 640, 983
BstPI GGTNACC 2 cut(s) 193, 508
BstSCI CCNGG 3 cut(s) 197, 683, 762
BstSLI GKGCMC 1 cut(s) 764
BstUI CGCG 2 cut(s) 27, 146
BstV1I GCAGC 1 cut(s) 880
BstX2I RGATCY 1 cut(s) 532
BstXI CCANNNNNNTGG 1 cut(s) 445
BstYI RGATCY 1 cut(s) 532
BstZ17I GTATAC 1 cut(s) 282
BsuRI GGCC 6 cut(s) 59, 218, 230, 499, 683, 905
BtgI CCRYGG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 894
Cac8I GCNNGC 3 cut(s) 167, 245, 981
CciI TCATGA 2 cut(s) 586, 957
CfoI GCGC 1 cut(s) 128
Cfr13I GGNCC 4 cut(s) 229, 261, 497, 903
Cfr42I CCGCGG 1 cut(s) 28
Csp6I GTAC 3 cut(s) 238, 331, 724
CviAII CATG 6 cut(s) 10, 362, 587, 637, 958, 980
CviQI GTAC 3 cut(s) 238, 331, 724
DdeI CTNAG 2 cut(s) 549, 852
DinI GGCGCC 1 cut(s) 127
DpnI GATC 5 cut(s) 149, 257, 467, 521, 534
DpnII GATC 5 cut(s) 147, 255, 465, 519, 532
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 728
Eco130I CCWWGG 2 cut(s) 118, 249
Eco147I AGGCCT 1 cut(s) 218
Eco24I GRGCYC 2 cut(s) 405, 484
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 193, 508
EcoO109I RGGNCCY 1 cut(s) 903
EcoO65I GGTNACC 2 cut(s) 193, 508
EcoRI GAATTC 1 cut(s) 35
EcoT14I CCWWGG 2 cut(s) 118, 249
EcoT38I GRGCYC 2 cut(s) 405, 484
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 2 cut(s) 118, 249
FaeI CATG 6 cut(s) 13, 365, 590, 640, 961, 983
FatI CATG 6 cut(s) 9, 361, 586, 636, 957, 979
FbaI TGATCA 1 cut(s) 519
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 6 cut(s) 28, 124, 144, 676, 849, 869
FriOI GRGCYC 2 cut(s) 405, 484
Fsp4HI GCNGC 6 cut(s) 28, 124, 144, 676, 849, 869
FspBI CTAG 2 cut(s) 308, 665
GlaI GCGC 1 cut(s) 127
GluI GCNGC 6 cut(s) 28, 124, 144, 676, 849, 869
GsaI CCCAGC 1 cut(s) 936
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 6 cut(s) 59, 218, 230, 499, 683, 905
HapII CCGG 6 cut(s) 198, 264, 293, 477, 684, 764
HhaI GCGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 6 cut(s) 13, 365, 590, 640, 961, 983
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HinfI GANTC 3 cut(s) 62, 289, 583
HpaII CCGG 6 cut(s) 198, 264, 293, 477, 684, 764
HphI GGTGA 5 cut(s) 187, 221, 265, 520, 790
Hpy166II GTNNAC 3 cut(s) 282, 448, 804
Hpy188I TCNGA 5 cut(s) 67, 74, 274, 537, 820
Hpy188III TCNNGA 9 cut(s) 52, 82, 308, 406, 463, 526, 551, 587, 958
Hpy8I GTNNAC 3 cut(s) 282, 448, 804
HpyAV CCTTC 5 cut(s) 49, 229, 523, 703, 955
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 165, 337, 868
HpyF10VI GCNNNNNNNGC 5 cut(s) 27, 302, 805, 877, 980
HpyF3I CTNAG 2 cut(s) 549, 852
HpySE526I ACGT 1 cut(s) 450
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 6 cut(s) 13, 365, 590, 640, 961, 983
HspAI GCGC 1 cut(s) 126
KasI GGCGCC 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 519
KspI CCGCGG 1 cut(s) 28
Kzo9I GATC 5 cut(s) 147, 255, 465, 519, 532
LmnI GCTCC 4 cut(s) 440, 479, 715, 741
Lsp1109I GCAGC 1 cut(s) 880
LweI GCATC 2 cut(s) 292, 313
MaeI CTAG 2 cut(s) 308, 665
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 4 cut(s) 193, 209, 508, 556
MalI GATC 5 cut(s) 149, 257, 467, 521, 534
MboI GATC 5 cut(s) 147, 255, 465, 519, 532
MboII GAAGA 6 cut(s) 103, 499, 706, 709, 718, 871
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 3 cut(s) 405, 484, 764
MluCI AATT 4 cut(s) 35, 427, 458, 598
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 4 cut(s) 90, 252, 798, 804
MslI CAYNNNNRTG 2 cut(s) 14, 342
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 6 cut(s) 198, 264, 293, 477, 684, 764
MspR9I CCNGG 3 cut(s) 199, 685, 764
MvnI CGCG 2 cut(s) 27, 146
MwoI GCNNNNNNNGC 5 cut(s) 27, 302, 805, 877, 980
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 3 cut(s) 199, 685, 764
NdeII GATC 5 cut(s) 147, 255, 465, 519, 532
NlaIII CATG 6 cut(s) 13, 365, 590, 640, 961, 983
NlaIV GGNNCC 4 cut(s) 127, 481, 498, 761
NmeAIII GCCGAG 2 cut(s) 85, 856
NmuCI GTSAC 4 cut(s) 193, 209, 508, 556
NspI RCATGY 2 cut(s) 640, 983
NspV TTCGAA 1 cut(s) 455
PaeI GCATGC 1 cut(s) 983
PagI TCATGA 2 cut(s) 586, 957
PceI AGGCCT 1 cut(s) 218
PciI ACATGT 1 cut(s) 636
PfeI GAWTC 2 cut(s) 289, 583
PkrI GCNGC 6 cut(s) 29, 125, 145, 677, 850, 870
PleI GAGTC 1 cut(s) 70
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 70
PscI ACATGT 1 cut(s) 636
PspEI GGTNACC 2 cut(s) 193, 508
PspFI CCCAGC 1 cut(s) 932
PspN4I GGNNCC 4 cut(s) 127, 481, 498, 761
PspPI GGNCC 4 cut(s) 229, 261, 497, 903
PsuI RGATCY 1 cut(s) 532
RsaI GTAC 3 cut(s) 239, 332, 725
RsaNI GTAC 3 cut(s) 238, 331, 724
RseI CAYNNNNRTG 2 cut(s) 14, 342
SacII CCGCGG 1 cut(s) 28
SatI GCNGC 6 cut(s) 28, 124, 144, 676, 849, 869
Sau3AI GATC 5 cut(s) 147, 255, 465, 519, 532
Sau96I GGNCC 4 cut(s) 229, 261, 497, 903
ScaI AGTACT 1 cut(s) 332
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 3 cut(s) 199, 685, 764
SduI GDGCHC 3 cut(s) 405, 484, 764
SetI ASST 9 cut(s) 72, 255, 383, 453, 720, 761, 785, 873, 887
SfaNI GCATC 2 cut(s) 292, 313
SfoI GGCGCC 1 cut(s) 127
Sfr303I CCGCGG 1 cut(s) 28
SfuI TTCGAA 1 cut(s) 455
SgrBI CCGCGG 1 cut(s) 28
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 14, 342
SmlI CTYRAG 2 cut(s) 809, 872
SmoI CTYRAG 2 cut(s) 809, 872
SphI GCATGC 1 cut(s) 983
Sse9I AATT 4 cut(s) 35, 427, 458, 598
SseBI AGGCCT 1 cut(s) 218
SsiI CCGC 7 cut(s) 25, 27, 123, 144, 675, 713, 848
SspDI GGCGCC 1 cut(s) 125
SspI AATATT 1 cut(s) 88
SspMI CTAG 2 cut(s) 308, 665
StuI AGGCCT 1 cut(s) 218
StyD4I CCNGG 3 cut(s) 197, 683, 762
StyI CCWWGG 2 cut(s) 118, 249
TaiI ACGT 1 cut(s) 453
TaqI TCGA 1 cut(s) 455
TasI AATT 4 cut(s) 35, 427, 458, 598
TatI WGTACW 3 cut(s) 237, 330, 723
TauI GCSGC 5 cut(s) 30, 126, 146, 678, 851
TfiI GAWTC 2 cut(s) 289, 583
TscAI CASTG 1 cut(s) 894
TseFI GTSAC 4 cut(s) 193, 209, 508, 556
TseI GCWGC 1 cut(s) 868
Tsp45I GTSAC 4 cut(s) 193, 209, 508, 556
TspDTI ATGAA 5 cut(s) 350, 575, 806, 946, 974
TspGWI ACGGA 1 cut(s) 94
TspRI CASTG 1 cut(s) 894
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 2 cut(s) 35, 458
XbaI TCTAGA 1 cut(s) 307
XceI RCATGY 2 cut(s) 640, 983
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 2 cut(s) 308, 665
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.