Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011886

Physical Location & Seq

Genomic Coordinates Forward (+)

16904059 .. 16905722

Gene Structure 1664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G35630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGCGGCTACGACGAACTCTTTCCTTGTCGGAAGCAACAACACTCAGATTCCTGCTTTGAAACCCAAATCATCATCTCAATCCTTTCTTCACCTCAGCAAACCAAACACCGTCAACTTCGTCAGCAAAACCAAGCCCGTCGCTGTTAGATGCGTCGCTTCAACGACTCAAGTTCAAGATGGAGTTAGATCCGGCTCCGTCGGATCCCAAGAACGTGTCTTCAACTTCGCGGCGGGTCCAGCCACTTTGCCTGAGAACGTTCTCCTAAAAGCTCAGGCGGATCTATACAACTGGCGTGGATCTGGCATGAGTGTGATGGAGATGAGTCACAGAGGCAAAGAGTTTCTCTCGATTATACAAAAAGCTGAATCGGATCTTCGTCAGCTTCTCGAGATTCCTCAGGAATATTCCGTTTTGTTCTTACAAGGTGGTGCCACTACTCAATTCGCTGCTTTACCTCTCAATCTCTGCAAATCGGATGATACAGTCGATTTCGTTGTTACTGGTTCGTGGGGTGATAAAGCTGTCAAGGAAGCGAAGAAGTATTGCAAGACTAATGTGATTTGGTCTGGGAAATCTGAGAAATACACAAAGGTTCCATCTTTTGAGGAGTTGGAGCAAACTCCGGACGCTAAGTATTTGCATATATGCGCCAATGAGACTATTCATGGAGTTGAGTTTAAAGATTACCCTGTTCCTAAAAATGGGTTCTTGGTTGCTGATATGTCTTCTAACTTCTGTTCGAAACCTGTTGATGTATCTAAGTTTGGTGTGATTTACGGTGGTGCACAGAAGAACGTTGGTCCATCTGGTGTCACAATTGTGATCATTCGTAAAGATTTGATTGGGAATGCTCAAGATATTACTCCTGTGATGCTTGATTACAAGATTCATGATGAGAATAGTTCGTTGTACAACACGCCTCCTTGCTTTGGGATTTACATGTGTGGTCTTGTGTTTGAAGATCTGTTGGAGCAAGGTGGATTGAAAGAAGTGGAGAAGAAGAACCAGAGGAAAGCTGATTTGCTTTACAATGCTATTGAAGAAAGCAATGGCTTTTTCAGATGTCCTGTTGAGAAATCAGTGAGGTCGTTGATGAATGTGCCTTTCACATTGGAGAAGTCTGAATTGGAAGCTGAGTTTATCAAGGAAGCTGCTAAAGAGAAGATGGTGCAGCTCAAAGGACATAGATCAGTGGGAGGTATGAGAGCTTCTATTTACAATGCAATGCCTTTGGCTGGTGTTGAAAAGCTTGTTGCTTTCATGAAAGATTTCCAGGCTAAGCATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0004648 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009555 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016053 GO:0016311 GO:0016740 GO:0016769 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0042221 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko00750 ko01100 ko01120 ko01130 ko01200 ko01230 ko03018 map00260 map00680 map00750 map01100 map01120 map01130 map01200 map01230 map03018

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

430

Amino Acids

47.36

Weight (kDa)

8.25

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	73 - 418	7.2e-48	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17630 AT4G35630
fragaria_vesca	FvH4_1g10530
malus_domestica	MD02G1119200.v1.1 MD15G1233200.v1.1
prunus_persica	Prupe.7G180700_v2.0.a1
pyrus_communis	pycom02g09290 pycom15g20770
rosa_chinensis	RchiOBHm_Chr2g0097441
rosa_laevigata	RLG00000016725
rosa_multiflora	Rmu_co8132210.1_g000001 Rmu_sc0004220.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144690
rosa_rugosa	Rorug02G0067000
rosa_samantha	Rh2AG113400 Rh2BG116500 Rh2CG118500 Rh2DG117500
rosa_wichuraiana	Rw2G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccII	CGCG	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	625
AciI	CCGC	4 cut(s)	5, 230, 233, 278
AclI	AACGTT	2 cut(s)	258, 798
AclWI	GGATC	6 cut(s)	183, 198, 211, 288, 307, 381
AfaI	GTAC	1 cut(s)	914
AfiI	CCNNNNNNNGG	3 cut(s)	704, 932, 1238
AflIII	ACRYGT	2 cut(s)	214, 942
AgsI	TTSAA	8 cut(s)	61, 162, 176, 223, 962, 988, 1043, 1247
AjnI	CCWGG	1 cut(s)	1275
AjuI	GAANNNNNNNTTGG	2 cut(s)	1112, 1144
AleI	CACNNNNGTG	1 cut(s)	821
Alw21I	GWGCWC	1 cut(s)	790
Alw26I	GTCTC	1 cut(s)	653
Alw44I	GTGCAC	1 cut(s)	786
AlwI	GGATC	6 cut(s)	183, 198, 211, 288, 307, 381
Ama87I	CYCGRG	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	625
ApaLI	GTGCAC	1 cut(s)	786
ApeKI	GCWGC	3 cut(s)	449, 1154, 1174
Asp700I	GAANNNNTTC	2 cut(s)	20, 1271
AspLEI	GCGC	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	236, 803
AsuHPI	GGTGA	2 cut(s)	83, 527
AsuII	TTCGAA	1 cut(s)	743
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	2 cut(s)	236, 803
AxyI	CCTNAGG	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	790
BamHI	GGATCC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	431
BarI	GAAGNNNNNNTAC	2 cut(s)	1195, 1227
BbsI	GAAGAC	2 cut(s)	211, 720
Bbv12I	GWGCWC	1 cut(s)	790
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	436, 1141, 1186
BccI	CCATC	5 cut(s)	173, 310, 607, 814, 1162
BciT130I	CCWGG	1 cut(s)	1277
BclI	TGATCA	1 cut(s)	825
BcoDI	GTCTC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	964
BisI	GCNGC	5 cut(s)	6, 231, 450, 1155, 1175
BlpI	GCTNAGC	1 cut(s)	1281
BlsI	GCNGC	5 cut(s)	7, 232, 451, 1156, 1176
Bme1390I	CCNGG	1 cut(s)	1277
Bme18I	GGWCC	2 cut(s)	236, 803
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	236, 803
BmiI	GGNNCC	5 cut(s)	196, 205, 237, 433, 597
BmrFI	CCNGG	1 cut(s)	1277
BmsI	GCATC	2 cut(s)	140, 864
BpiI	GAAGAC	2 cut(s)	211, 720
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
Bpu10I	CCTNAGC	2 cut(s)	95, 273
Bpu1102I	GCTNAGC	1 cut(s)	1281
Bpu14I	TTCGAA	1 cut(s)	743
BpuEI	CTTGAG	2 cut(s)	153, 840
BsaWI	WCCGGW	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	3 cut(s)	704, 932, 1238
Bse1I	ACTGG	2 cut(s)	296, 508
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	2 cut(s)	1057, 1233
BseAI	TCCGGA	1 cut(s)	625
BseBI	CCWGG	1 cut(s)	1277
BseGI	GGATG	1 cut(s)	484
BseLI	CCNNNNNNNGG	3 cut(s)	704, 932, 1238
BseMI	GCAATG	2 cut(s)	1057, 1233
BseMII	CTCAG	7 cut(s)	59, 109, 243, 287, 413, 570, 1128
BseNI	ACTGG	2 cut(s)	296, 508
BseRI	GAGGAG	1 cut(s)	623
BseSI	GKGCMC	1 cut(s)	790
BseXI	GCAGC	3 cut(s)	436, 1141, 1186
BsgI	GTGCAG	1 cut(s)	1193
Bsh1236I	CGCG	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	431
BsiHKAI	GWGCWC	1 cut(s)	790
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	192, 626
BslI	CCNNNNNNNGG	3 cut(s)	704, 932, 1238
BsmAI	GTCTC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	856
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	743
Bsp1286I	GDGCHC	1 cut(s)	790
Bsp13I	TCCGGA	1 cut(s)	625
Bsp1407I	TGTACA	1 cut(s)	912
Bsp143I	GATC	8 cut(s)	188, 203, 280, 299, 373, 825, 964, 1190
Bsp1720I	GCTNAGC	1 cut(s)	1281
BspACI	CCGC	4 cut(s)	5, 230, 233, 278
BspCNI	CTCAG	7 cut(s)	58, 108, 244, 286, 412, 571, 1129
BspEI	TCCGGA	1 cut(s)	625
BspFNI	CGCG	1 cut(s)	230
BspHI	TCATGA	2 cut(s)	892, 1263
BspLI	GGNNCC	5 cut(s)	196, 205, 237, 433, 597
BspPI	GGATC	6 cut(s)	183, 198, 211, 288, 307, 381
BspT104I	TTCGAA	1 cut(s)	743
BspT107I	GGYRCC	1 cut(s)	431
BsrDI	GCAATG	2 cut(s)	1057, 1233
BsrGI	TGTACA	1 cut(s)	912
BsrI	ACTGG	2 cut(s)	296, 508
BssMI	GATC	8 cut(s)	188, 203, 280, 299, 373, 825, 964, 1190
Bst2UI	CCWGG	1 cut(s)	1277
Bst4CI	ACNGT	3 cut(s)	112, 487, 782
BstAUI	TGTACA	1 cut(s)	912
BstBI	TTCGAA	1 cut(s)	743
BstC8I	GCNNGC	1 cut(s)	1287
BstF5I	GGATG	1 cut(s)	484
BstFNI	CGCG	1 cut(s)	230
BstHHI	GCGC	1 cut(s)	653
BstKTI	GATC	8 cut(s)	191, 206, 283, 302, 376, 828, 967, 1193
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	8 cut(s)	188, 203, 280, 299, 373, 825, 964, 1190
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 1286
BstNI	CCWGG	1 cut(s)	1277
BstNSI	RCATGY	2 cut(s)	946, 1289
BstSCI	CCNGG	1 cut(s)	1275
BstSLI	GKGCMC	1 cut(s)	790
BstUI	CGCG	1 cut(s)	230
BstV1I	GCAGC	3 cut(s)	436, 1141, 1186
BstV2I	GAAGAC	2 cut(s)	211, 720
BstX2I	RGATCY	6 cut(s)	188, 203, 280, 299, 373, 964
BstYI	RGATCY	6 cut(s)	188, 203, 280, 299, 373, 964
Bsu36I	CCTNAGG	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	484
BtsIMutI	CAGTG	2 cut(s)	1089, 1200
Cac8I	GCNNGC	1 cut(s)	1287
CciI	TCATGA	2 cut(s)	892, 1263
CfoI	GCGC	1 cut(s)	653
Cfr13I	GGNCC	2 cut(s)	236, 803
CseI	GACGC	2 cut(s)	142, 638
Csp6I	GTAC	1 cut(s)	913
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviAII	CATG	6 cut(s)	307, 668, 893, 943, 1264, 1286
CviQI	GTAC	1 cut(s)	913
DpnI	GATC	8 cut(s)	190, 205, 282, 301, 375, 827, 966, 1192
DpnII	GATC	8 cut(s)	188, 203, 280, 299, 373, 825, 964, 1190
DraI	TTTAAA	1 cut(s)	682
EciI	GGCGGA	1 cut(s)	293
Eco47I	GGWCC	2 cut(s)	236, 803
Eco81I	CCTNAGG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	1275
FaeI	CATG	6 cut(s)	310, 671, 896, 946, 1267, 1289
FatI	CATG	6 cut(s)	306, 667, 892, 942, 1263, 1285
FauI	CCCGC	1 cut(s)	226
FbaI	TGATCA	1 cut(s)	825
Fnu4HI	GCNGC	5 cut(s)	6, 231, 450, 1155, 1175
FokI	GGATG	1 cut(s)	491
Fsp4HI	GCNGC	5 cut(s)	6, 231, 450, 1155, 1175
GlaI	GCGC	1 cut(s)	652
GluI	GCNGC	5 cut(s)	6, 231, 450, 1155, 1175
HapII	CCGG	2 cut(s)	192, 626
HgaI	GACGC	2 cut(s)	142, 638
HhaI	GCGC	1 cut(s)	653
Hin1II	CATG	6 cut(s)	310, 671, 896, 946, 1267, 1289
Hin6I	GCGC	1 cut(s)	651
HinP1I	GCGC	1 cut(s)	651
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	1250
HinfI	GANTC	6 cut(s)	49, 166, 325, 368, 394, 889
HpaII	CCGG	2 cut(s)	192, 626
HphI	GGTGA	2 cut(s)	83, 527
Hpy166II	GTNNAC	2 cut(s)	115, 788
Hpy188I	TCNGA	8 cut(s)	32, 48, 203, 373, 478, 580, 1064, 1126
Hpy188III	TCNNGA	9 cut(s)	176, 349, 389, 391, 401, 626, 857, 893, 1264
Hpy8I	GTNNAC	2 cut(s)	115, 788
Hpy99I	CGWCG	4 cut(s)	16, 143, 158, 203
HpyCH4III	ACNGT	3 cut(s)	112, 487, 782
HpyCH4IV	ACGT	3 cut(s)	214, 258, 798
HpyCH4V	TGCA	6 cut(s)	471, 549, 643, 788, 1174, 1226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 1286
HpySE526I	ACGT	3 cut(s)	214, 258, 798
Hsp92II	CATG	6 cut(s)	310, 671, 896, 946, 1267, 1289
HspAI	GCGC	1 cut(s)	651
Kpn2I	TCCGGA	1 cut(s)	625
Ksp22I	TGATCA	1 cut(s)	825
Kzo9I	GATC	8 cut(s)	188, 203, 280, 299, 373, 825, 964, 1190
LmnI	GCTCC	3 cut(s)	200, 616, 973
Lsp1109I	GCAGC	3 cut(s)	436, 1141, 1186
LweI	GCATC	2 cut(s)	140, 864
MaeII	ACGT	3 cut(s)	214, 258, 798
MaeIII	GTNAC	3 cut(s)	326, 499, 814
MalI	GATC	8 cut(s)	190, 205, 282, 301, 375, 827, 966, 1192
MboI	GATC	8 cut(s)	188, 203, 280, 299, 373, 825, 964, 1190
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	6 cut(s)	188, 203, 280, 299, 373, 964
MhlI	GDGCHC	1 cut(s)	790
MluCI	AATT	3 cut(s)	443, 819, 1127
MlyI	GAGTC	2 cut(s)	160, 334
MmeI	TCCRAC	4 cut(s)	10, 181, 594, 951
MnlI	CCTC	9 cut(s)	104, 326, 408, 468, 601, 933, 1005, 1080, 1193
MroI	TCCGGA	1 cut(s)	625
MroXI	GAANNNNTTC	2 cut(s)	20, 1271
MseI	TTAA	1 cut(s)	681
MslI	CAYNNNNRTG	2 cut(s)	311, 821
MspI	CCGG	2 cut(s)	192, 626
MspR9I	CCNGG	1 cut(s)	1277
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	1 cut(s)	1277
MvnI	CGCG	1 cut(s)	230
MwoI	GCNNNNNNNGC	2 cut(s)	239, 1286
NdeII	GATC	8 cut(s)	188, 203, 280, 299, 373, 825, 964, 1190
NlaIII	CATG	6 cut(s)	310, 671, 896, 946, 1267, 1289
NlaIV	GGNNCC	5 cut(s)	196, 205, 237, 433, 597
NmuCI	GTSAC	2 cut(s)	326, 814
NspI	RCATGY	2 cut(s)	946, 1289
NspV	TTCGAA	1 cut(s)	743
OliI	CACNNNNGTG	1 cut(s)	821
PaeI	GCATGC	1 cut(s)	1289
PaeR7I	CTCGAG	1 cut(s)	389
PagI	TCATGA	2 cut(s)	892, 1263
PciI	ACATGT	1 cut(s)	942
PctI	GAATGC	1 cut(s)	856
PdmI	GAANNNNTTC	2 cut(s)	20, 1271
PfeI	GAWTC	4 cut(s)	49, 368, 394, 889
PkrI	GCNGC	5 cut(s)	7, 232, 451, 1156, 1176
PleI	GAGTC	2 cut(s)	160, 333
PpsI	GAGTC	2 cut(s)	160, 333
PscI	ACATGT	1 cut(s)	942
Psp1406I	AACGTT	2 cut(s)	258, 798
Psp6I	CCWGG	1 cut(s)	1275
PspGI	CCWGG	1 cut(s)	1275
PspN4I	GGNNCC	5 cut(s)	196, 205, 237, 433, 597
PspPI	GGNCC	2 cut(s)	236, 803
PsuI	RGATCY	6 cut(s)	188, 203, 280, 299, 373, 964
RsaI	GTAC	1 cut(s)	914
RsaNI	GTAC	1 cut(s)	913
RseI	CAYNNNNRTG	2 cut(s)	311, 821
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	5 cut(s)	6, 231, 450, 1155, 1175
Sau3AI	GATC	8 cut(s)	188, 203, 280, 299, 373, 825, 964, 1190
Sau96I	GGNCC	2 cut(s)	236, 803
SchI	GAGTC	2 cut(s)	160, 334
ScrFI	CCNGG	1 cut(s)	1277
SduI	GDGCHC	1 cut(s)	790
SfaNI	GCATC	2 cut(s)	140, 864
Sfr274I	CTCGAG	1 cut(s)	389
SfuI	TTCGAA	1 cut(s)	743
SinI	GGWCC	2 cut(s)	236, 803
SlaI	CTCGAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	2 cut(s)	311, 821
SmlI	CTYRAG	3 cut(s)	168, 389, 855
SmoI	CTYRAG	3 cut(s)	168, 389, 855
SphI	GCATGC	1 cut(s)	1289
Sse9I	AATT	3 cut(s)	443, 819, 1127
SsiI	CCGC	4 cut(s)	5, 230, 233, 278
SspI	AATATT	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	1275
TaaI	ACNGT	3 cut(s)	112, 487, 782
TaiI	ACGT	3 cut(s)	217, 261, 801
TaqI	TCGA	4 cut(s)	350, 390, 489, 743
TasI	AATT	3 cut(s)	443, 819, 1127
TatI	WGTACW	1 cut(s)	912
TauI	GCSGC	2 cut(s)	8, 233
TfiI	GAWTC	4 cut(s)	49, 368, 394, 889
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	2 cut(s)	1089, 1200
TseFI	GTSAC	2 cut(s)	326, 814
TseI	GCWGC	3 cut(s)	449, 1154, 1174
Tsp45I	GTSAC	2 cut(s)	326, 814
TspDTI	ATGAA	5 cut(s)	656, 881, 1112, 1252, 1280
TspGWI	ACGGA	2 cut(s)	187, 400
TspRI	CASTG	2 cut(s)	1089, 1200
VneI	GTGCAC	1 cut(s)	786
VpaK11BI	GGWCC	2 cut(s)	236, 803
XceI	RCATGY	2 cut(s)	946, 1289
XhoI	CTCGAG	1 cut(s)	389
XmnI	GAANNNNTTC	2 cut(s)	20, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.