Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8132210.1

Orthogroup ID

OG0011886

Physical Location & Seq

Genomic Coordinates Reverse (-)

62 .. 631

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8132210.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atgtcctctaatttttgctcaaagcctgtggacgtttcgaaattcgggatcatctacgccggggcacagaagaatgtggggccatctggggtgaccattgtgatcatcaggaaggatctgattggaaatgctcaggaagtcacaccagtaatgctggattacaagatccatgacgataacaattcgctgtataatactcctccctgctatgggatttacatgtgtgggcttgtgtttgaggatttgctagagcagggcggcctggccgggattgagaagaagaacaagaagaaggcggagctgttgtacaatgccattgatgggagcaatgggttttacaggtgcccggtggagaagtcggtgaggtcattgatgaatgtgccgtttacgcttgagaaatcggagttggaagccgagtttatcaaggaggcggctaaggagaagatggtgcagctcaaggggcatagatcagtgggaggaatgagggcctctatatataatgctatgcctttggctggggtggagaagttggttgctttcatgaaggactttcaggcaaagcatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004647 GO:0004648 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006563 GO:0006564 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009534 GO:0009536 GO:0009555 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0016053 GO:0016311 GO:0016740 GO:0016769 GO:0016787 GO:0016788 GO:0016791 GO:0019752 GO:0022414 GO:0022622 GO:0031976 GO:0031984 GO:0032501 GO:0032502 GO:0042221 GO:0042578 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046686 GO:0046872 GO:0048229 GO:0048316 GO:0048364 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0099402 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00680 ko00750 ko01100 ko01120 ko01130 ko01200 ko01230 ko03018 map00260 map00680 map00750 map01100 map01120 map01130 map01200 map01230 map03018

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

189

Amino Acids

20.83

Weight (kDa)

8.57

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011886)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17630 AT4G35630
fragaria_vesca	FvH4_1g10530
malus_domestica	MD02G1119200.v1.1 MD15G1233200.v1.1
prunus_persica	Prupe.7G180700_v2.0.a1
pyrus_communis	pycom02g09290 pycom15g20770
rosa_chinensis	RchiOBHm_Chr2g0097441
rosa_laevigata	RLG00000016725
rosa_multiflora	Rmu_co8132210.1_g000001 Rmu_sc0004220.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144690
rosa_rugosa	Rorug02G0067000
rosa_samantha	Rh2AG113400 Rh2BG116500 Rh2CG118500 Rh2DG117500
rosa_wichuraiana	Rw2G008890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	342
AciI	CCGC	3 cut(s)	258, 296, 431
AclWI	GGATC	3 cut(s)	56, 123, 160
AcoI	YGGCCR	1 cut(s)	264
AcsI	RAATTY	1 cut(s)	41
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	4 cut(s)	209, 210, 321, 515
AflIII	ACRYGT	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	261
AjuI	GAANNNNNNNTTGG	2 cut(s)	389, 421
AluBI	AGCT	2 cut(s)	301, 454
AluI	AGCT	2 cut(s)	301, 454
AlwI	GGATC	3 cut(s)	56, 123, 160
AoxI	GGCC	4 cut(s)	80, 259, 264, 486
ApeKI	GCWGC	1 cut(s)	451
ApoI	RAATTY	1 cut(s)	41
AspS9I	GGNCC	2 cut(s)	80, 486
AsuC2I	CCSGG	3 cut(s)	61, 268, 347
AsuHPI	GGTGA	2 cut(s)	103, 373
AsuII	TTCGAA	1 cut(s)	38
BaeGI	GKGCMC	2 cut(s)	67, 347
BanI	GGYRCC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	3 cut(s)	91, 314, 439
BceAI	ACGGC	1 cut(s)	367
BciT130I	CCWGG	1 cut(s)	263
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	3 cut(s)	61, 268, 347
BfaI	CTAG	1 cut(s)	248
BisI	GCNGC	3 cut(s)	259, 432, 452
BlsI	GCNGC	3 cut(s)	260, 433, 453
Bme1390I	CCNGG	4 cut(s)	61, 263, 268, 347
BmgT120I	GGNCC	2 cut(s)	80, 486
BmiI	GGNNCC	2 cut(s)	81, 344
BmrFI	CCNGG	4 cut(s)	61, 263, 268, 347
Bpu10I	CCTNAGC	2 cut(s)	132, 435
Bpu14I	TTCGAA	1 cut(s)	38
BpuEI	CTTGAG	2 cut(s)	413, 440
BpuMI	CCSGG	3 cut(s)	61, 268, 347
BsaJI	CCNNGG	1 cut(s)	60
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 210, 321, 515
Bse1I	ACTGG	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	4 cut(s)	209, 210, 321, 515
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	189
BseSI	GKGCMC	2 cut(s)	67, 347
BseXI	GCAGC	1 cut(s)	463
BseYI	CCCAGC	1 cut(s)	515
BsgI	GTGCAG	1 cut(s)	470
BshFI	GGCC	4 cut(s)	82, 261, 266, 488
BshNI	GGYRCC	1 cut(s)	342
BsiSI	CCGG	3 cut(s)	60, 267, 347
BslI	CCNNNNNNNGG	4 cut(s)	209, 210, 321, 515
BsnI	GGCC	4 cut(s)	82, 261, 266, 488
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	2 cut(s)	67, 347
Bsp1407I	TGTACA	1 cut(s)	306
Bsp143I	GATC	5 cut(s)	48, 102, 115, 165, 467
BspACI	CCGC	3 cut(s)	258, 296, 431
BspANI	GGCC	4 cut(s)	82, 261, 266, 488
BspCNI	CTCAG	1 cut(s)	145
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	2 cut(s)	81, 344
BspPI	GGATC	3 cut(s)	56, 123, 160
BspT104I	TTCGAA	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	342
BsrDI	GCAATG	1 cut(s)	334
BsrGI	TGTACA	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	5 cut(s)	48, 102, 115, 165, 467
Bst2UI	CCWGG	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	306
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	2 cut(s)	132, 435
BstEII	GGTNACC	1 cut(s)	91
BstKTI	GATC	5 cut(s)	51, 105, 118, 168, 470
BstMBI	GATC	5 cut(s)	48, 102, 115, 165, 467
BstMWI	GCNNNNNNNGC	3 cut(s)	388, 460, 563
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	2 cut(s)	223, 566
BstPI	GGTNACC	1 cut(s)	91
BstSCI	CCNGG	4 cut(s)	59, 261, 266, 345
BstSLI	GKGCMC	2 cut(s)	67, 347
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	2 cut(s)	115, 165
BstYI	RGATCY	2 cut(s)	115, 165
BsuRI	GGCC	4 cut(s)	82, 261, 266, 488
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	564
CciI	TCATGA	1 cut(s)	540
Cfr13I	GGNCC	2 cut(s)	80, 486
Csp6I	GTAC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	9, 44
CviAII	CATG	4 cut(s)	170, 220, 541, 563
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	2 cut(s)	132, 435
DpnI	GATC	5 cut(s)	50, 104, 117, 167, 469
DpnII	GATC	5 cut(s)	48, 102, 115, 165, 467
EaeI	YGGCCR	1 cut(s)	264
EciI	GGCGGA	1 cut(s)	311
Eco91I	GGTNACC	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	486
EcoO65I	GGTNACC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	261
FaeI	CATG	4 cut(s)	173, 223, 544, 566
FatI	CATG	4 cut(s)	169, 219, 540, 562
FbaI	TGATCA	1 cut(s)	102
Fnu4HI	GCNGC	3 cut(s)	259, 432, 452
Fsp4HI	GCNGC	3 cut(s)	259, 432, 452
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	3 cut(s)	259, 432, 452
GsaI	CCCAGC	1 cut(s)	519
HaeIII	GGCC	4 cut(s)	82, 261, 266, 488
HapII	CCGG	3 cut(s)	60, 267, 347
Hin1II	CATG	4 cut(s)	173, 223, 544, 566
HpaII	CCGG	3 cut(s)	60, 267, 347
HphI	GGTGA	2 cut(s)	103, 373
Hpy166II	GTNNAC	2 cut(s)	31, 387
Hpy188I	TCNGA	2 cut(s)	120, 403
Hpy188III	TCNNGA	4 cut(s)	46, 109, 134, 541
Hpy8I	GTNNAC	2 cut(s)	31, 387
HpyAV	CCTTC	3 cut(s)	106, 286, 538
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	1 cut(s)	451
HpyF10VI	GCNNNNNNNGC	3 cut(s)	388, 460, 563
HpyF3I	CTNAG	2 cut(s)	132, 435
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	4 cut(s)	173, 223, 544, 566
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	5 cut(s)	48, 102, 115, 165, 467
LmnI	GCTCC	2 cut(s)	298, 324
Lsp1109I	GCAGC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	248
MaeII	ACGT	1 cut(s)	33
MaeIII	GTNAC	2 cut(s)	91, 139
MalI	GATC	5 cut(s)	50, 104, 117, 167, 469
MboI	GATC	5 cut(s)	48, 102, 115, 165, 467
MboII	GAAGA	5 cut(s)	82, 289, 292, 301, 454
MflI	RGATCY	2 cut(s)	115, 165
MhlI	GDGCHC	2 cut(s)	67, 347
MluCI	AATT	3 cut(s)	10, 41, 181
MmeI	TCCRAC	1 cut(s)	387
MnlI	CCTC	8 cut(s)	16, 210, 232, 357, 421, 470, 477, 499
MspI	CCGG	3 cut(s)	60, 267, 347
MspR9I	CCNGG	4 cut(s)	61, 263, 268, 347
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	388, 460, 563
NciI	CCSGG	3 cut(s)	61, 268, 347
NdeII	GATC	5 cut(s)	48, 102, 115, 165, 467
NlaIII	CATG	4 cut(s)	173, 223, 544, 566
NlaIV	GGNNCC	2 cut(s)	81, 344
NmeAIII	GCCGAG	1 cut(s)	439
NmuCI	GTSAC	2 cut(s)	91, 139
NspI	RCATGY	2 cut(s)	223, 566
NspV	TTCGAA	1 cut(s)	38
PaeI	GCATGC	1 cut(s)	566
PagI	TCATGA	1 cut(s)	540
PciI	ACATGT	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	260, 433, 453
PscI	ACATGT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	261
PspEI	GGTNACC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	515
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	81, 344
PspPI	GGNCC	2 cut(s)	80, 486
PsuI	RGATCY	2 cut(s)	115, 165
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SatI	GCNGC	3 cut(s)	259, 432, 452
Sau3AI	GATC	5 cut(s)	48, 102, 115, 165, 467
Sau96I	GGNCC	2 cut(s)	80, 486
ScrFI	CCNGG	4 cut(s)	61, 263, 268, 347
SduI	GDGCHC	2 cut(s)	67, 347
SetI	ASST	5 cut(s)	36, 303, 344, 368, 456
SfuI	TTCGAA	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	392, 455
SmoI	CTYRAG	2 cut(s)	392, 455
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	3 cut(s)	10, 41, 181
SsiI	CCGC	3 cut(s)	258, 296, 431
SspMI	CTAG	1 cut(s)	248
StyD4I	CCNGG	4 cut(s)	59, 261, 266, 345
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	38
TasI	AATT	3 cut(s)	10, 41, 181
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	2 cut(s)	261, 434
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	2 cut(s)	91, 139
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	2 cut(s)	91, 139
TspDTI	ATGAA	3 cut(s)	389, 529, 557
TspRI	CASTG	1 cut(s)	477
XapI	RAATTY	1 cut(s)	41
XceI	RCATGY	2 cut(s)	223, 566
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.