AT2G20770

Lanthionine synthetase C-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0021907
Physical Location & Seq
Forward (+)
8945243 .. 8947310
2068 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G20770.1

Sequence Viewer

Length: 1218 bp
ATGGCGGGTCGGTTCTTCGATAACGTGATGCCTGATTTCGTGAAGGAGAAGGAAAGTGTATCTGGAGGAGATACGCTTAGGAATCTGCTTGCTATGCCGTATTCGTCTCTCTCGCAGCAGCTCAAGCGGTCCGCTTTGGATCTCAAAGAAACCGTAGTGATTGAAACTTGGGGTTTTAGTGGACAGACTGTTGAAGACTTCACTCTTTACTCTGGAACTCTTGGAGCTGCGTTTTTACTCTTTAGAGCTTATCAGGTTACTGGCAACGCCAACGATCTTTCCCTCTGCTTGGAAATCGTCAAAGCTTGTGATACTGCTTCTGCTTCCTCAGGGGATGTTACTTTTCTCTGTGGCCGAGCTGGTGTTTGTGGTCTTGGCGCTGTTGCAGCTAAGCTTTCTGGTGAGGAAGATTTGCTCAATTACTATTTGGGACAATTTCGTCTGATAAGACTATCTAGTGATCTTCCTAACGAGCTTTTGTATGGAAGAGTTGGTTATCTATGGGCTTGTCTGTTTATCAACAAGTACATCGGCAAAGAAACTTTGTCTTCAGATACCATCCGCGAAGTTGCTCAGGAGATTATCAAGGAAGGAAGATCAATGGCTAAGAAAGGAAGCTCACCGCTTATGTTTGAATGGTATGGCAAAAGGTACTGGGGTGCAGCACATGGACTTGCTGGTATTATGCACGTATTGATGGATGTTCAGCTGAAGCCTGACGAGGCAGAAGATGTGAAGGGAACCCTTAAGTATATGATCAAGAATCGGTTTCCAAGTGGAAATTACCCTGCTAGTGAAGAGGATAAGAAGAAAGATATTCTTGTGCATTGGTGTCATGGAGCCCCTGGGATTGCCCTCACACTTGGGAAGGCGGCTGAGGTTTTTGGGGAGAGAGAGTTTCTGGAAGCGAGTGCAGCTGCAGCAGAGGTGGTTTGGAACCGTGGATTGCTCAAGCGCGTGGGGATCTGTCATGGAATAAGTGGGAACGCATATGTTTTTCTTGCGCTTTACAGAGCTACGGGAAGGAGTGAGTATCTATACCGTGCAAAAGCCTTTGCCAGTTTCCTGCTTGATAGAGGCCCCAAGTTACTCTCAAAAGGAGAAATGCATGGAGGTGATAGTCCTTATTCCTTGTTTGAAGGCGTTGCAGGCATGGCCTATCTCTTCCTTGACATGGTCGACCCATCTGAAGCCAGGTTCCCAGGTTACGAGCTTTAA

Protein Analysis

405

Amino Acids

44.49

Weight (kDa)

5.97

Isoelectric Point (pI)

32.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LANC_like PF05147 64 - 405 7.3e-104 Lanthionine synthetase C-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20770
malus_domestica MD09G1251300.v1.1
prunus_persica Prupe.3G156300_v2.0.a1
pyrus_communis pycom09g16770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 438
AccI GTMKAC 1 cut(s) 1179
AccII CGCG 2 cut(s) 564, 957
AciI CCGC 6 cut(s) 5, 127, 132, 562, 623, 872
AclWI GGATC 2 cut(s) 147, 971
AcoI YGGCCR 1 cut(s) 352
AcuI CTGAAG 3 cut(s) 534, 731, 1209
AfaI GTAC 2 cut(s) 527, 653
AfiI CCNNNNNNNGG 2 cut(s) 289, 1174
AflII CTTAAG 1 cut(s) 746
AgsI TTSAA 4 cut(s) 164, 194, 635, 1139
AjnI CCWGG 3 cut(s) 844, 1193, 1201
Alw26I GTCTC 1 cut(s) 111
AlwI GGATC 2 cut(s) 147, 971
AoxI GGCC 3 cut(s) 352, 1078, 1155
ApeKI GCWGC 8 cut(s) 115, 118, 227, 386, 662, 914, 917, 920
AspLEI GCGC 3 cut(s) 380, 957, 1006
AspS9I GGNCC 2 cut(s) 129, 1079
AsuHPI GGTGA 3 cut(s) 413, 612, 1127
AvaII GGWCC 1 cut(s) 129
AxyI CCTNAGG 1 cut(s) 328
BaeI ACNNNNGTAYC 2 cut(s) 643, 676
BanII GRGCYC 1 cut(s) 844
BbsI GAAGAC 2 cut(s) 201, 540
BbvCI CCTCAGC 1 cut(s) 876
BbvI GCAGC 8 cut(s) 127, 130, 214, 398, 674, 904, 926, 932
BccI CCATC 3 cut(s) 566, 691, 1192
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 3 cut(s) 846, 1195, 1203
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 2 cut(s) 456, 792
BfmI CTRYAG 1 cut(s) 918
BfoI RGCGCY 1 cut(s) 381
BfrI CTTAAG 1 cut(s) 746
BisI GCNGC 9 cut(s) 116, 119, 228, 387, 663, 873, 915, 918, 921
BlpI GCTNAGC 1 cut(s) 390
BlsI GCNGC 9 cut(s) 117, 120, 229, 388, 664, 874, 916, 919, 922
Bme1390I CCNGG 3 cut(s) 846, 1195, 1203
Bme18I GGWCC 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 129, 1079
BmiI GGNNCC 5 cut(s) 742, 841, 938, 1081, 1199
BmrFI CCNGG 3 cut(s) 846, 1195, 1203
BmrI ACTGGG 1 cut(s) 664
BmsI GCATC 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 664
BpiI GAAGAC 2 cut(s) 201, 540
BpmI CTGGAG 1 cut(s) 84
Bpu10I CCTNAGC 3 cut(s) 77, 573, 876
Bpu1102I GCTNAGC 1 cut(s) 390
BpuEI CTTGAG 2 cut(s) 107, 935
BsaAI YACGTR 1 cut(s) 691
BsaJI CCNNGG 4 cut(s) 844, 845, 940, 1201
BsaXI ACNNNNNCTCC 2 cut(s) 881, 911
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 1174
Bse1I ACTGG 3 cut(s) 265, 659, 1059
Bse21I CCTNAGG 1 cut(s) 328
BseBI CCWGG 3 cut(s) 846, 1195, 1203
BseDI CCNNGG 4 cut(s) 844, 845, 940, 1201
BseGI GGATG 3 cut(s) 340, 558, 706
BseLI CCNNNNNNNGG 2 cut(s) 289, 1174
BseMII CTCAG 3 cut(s) 342, 587, 867
BseNI ACTGG 3 cut(s) 265, 659, 1059
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 8 cut(s) 127, 130, 214, 398, 674, 904, 926, 932
BsgI GTGCAG 2 cut(s) 681, 933
Bsh1236I CGCG 2 cut(s) 564, 957
BshFI GGCC 3 cut(s) 354, 1080, 1157
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 2 cut(s) 289, 1174
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 3 cut(s) 354, 1080, 1157
Bsp1286I GDGCHC 1 cut(s) 844
Bsp143I GATC 6 cut(s) 139, 274, 460, 596, 756, 963
Bsp1720I GCTNAGC 1 cut(s) 390
BspACI CCGC 6 cut(s) 5, 127, 132, 562, 623, 872
BspANI GGCC 3 cut(s) 354, 1080, 1157
BspCNI CTCAG 3 cut(s) 341, 586, 868
BspFNI CGCG 2 cut(s) 564, 957
BspLI GGNNCC 5 cut(s) 742, 841, 938, 1081, 1199
BspMAI CTGCAG 1 cut(s) 922
BspPI GGATC 2 cut(s) 147, 971
BspTI CTTAAG 1 cut(s) 746
BsrI ACTGG 3 cut(s) 265, 659, 1059
BssECI CCNNGG 4 cut(s) 844, 845, 940, 1201
BssMI GATC 6 cut(s) 139, 274, 460, 596, 756, 963
Bst2UI CCWGG 3 cut(s) 846, 1195, 1203
Bst4CI ACNGT 4 cut(s) 154, 190, 941, 1043
Bst6I CTCTTC 3 cut(s) 481, 792, 1169
BstAFI CTTAAG 1 cut(s) 746
BstBAI YACGTR 1 cut(s) 691
BstC8I GCNNGC 2 cut(s) 90, 1150
BstDEI CTNAG 6 cut(s) 77, 328, 390, 573, 606, 876
BstDSI CCRYGG 1 cut(s) 940
BstF5I GGATG 3 cut(s) 340, 558, 706
BstFNI CGCG 2 cut(s) 564, 957
BstH2I RGCGCY 1 cut(s) 381
BstHHI GCGC 3 cut(s) 380, 957, 1006
BstKTI GATC 6 cut(s) 142, 277, 463, 599, 759, 966
BstMAI GTCTC 1 cut(s) 111
BstMBI GATC 6 cut(s) 139, 274, 460, 596, 756, 963
BstMWI GCNNNNNNNGC 7 cut(s) 94, 124, 386, 914, 920, 1149, 1154
BstNI CCWGG 3 cut(s) 846, 1195, 1203
BstSCI CCNGG 3 cut(s) 844, 1193, 1201
BstSFI CTRYAG 1 cut(s) 918
BstUI CGCG 2 cut(s) 564, 957
BstV1I GCAGC 8 cut(s) 127, 130, 214, 398, 674, 904, 926, 932
BstV2I GAAGAC 2 cut(s) 201, 540
BstX2I RGATCY 2 cut(s) 139, 963
BstYI RGATCY 2 cut(s) 139, 963
Bsu36I CCTNAGG 1 cut(s) 328
BsuRI GGCC 3 cut(s) 354, 1080, 1157
BtgI CCRYGG 1 cut(s) 940
BtsCI GGATG 3 cut(s) 340, 558, 706
Cac8I GCNNGC 2 cut(s) 90, 1150
CfoI GCGC 3 cut(s) 380, 957, 1006
Cfr13I GGNCC 2 cut(s) 129, 1079
CpoI CGGWCCG 1 cut(s) 129
Csp6I GTAC 2 cut(s) 526, 652
CspI CGGWCCG 1 cut(s) 129
CviAII CATG 6 cut(s) 668, 836, 971, 1109, 1153, 1174
CviQI GTAC 2 cut(s) 526, 652
DdeI CTNAG 6 cut(s) 77, 328, 390, 573, 606, 876
DpnI GATC 6 cut(s) 141, 276, 462, 598, 758, 965
DpnII GATC 6 cut(s) 139, 274, 460, 596, 756, 963
DrdI GACNNNNNNGTC 1 cut(s) 438
DseDI GACNNNNNNGTC 1 cut(s) 438
EaeI YGGCCR 1 cut(s) 352
Eam1104I CTCTTC 3 cut(s) 481, 792, 1169
EarI CTCTTC 3 cut(s) 481, 792, 1169
Eco24I GRGCYC 1 cut(s) 844
Eco47I GGWCC 1 cut(s) 129
Eco57I CTGAAG 3 cut(s) 534, 731, 1209
Eco81I CCTNAGG 1 cut(s) 328
EcoO109I RGGNCCY 1 cut(s) 1079
EcoRII CCWGG 3 cut(s) 844, 1193, 1201
EcoT22I ATGCAT 1 cut(s) 1110
EcoT38I GRGCYC 1 cut(s) 844
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 6 cut(s) 671, 839, 974, 1112, 1156, 1177
FalI AAGNNNNNCTT 2 cut(s) 804, 836
FaqI GGGAC 1 cut(s) 444
FatI CATG 6 cut(s) 667, 835, 970, 1108, 1152, 1173
FauNDI CATATG 1 cut(s) 991
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 1 cut(s) 1179
Fnu4HI GCNGC 9 cut(s) 116, 119, 228, 387, 663, 873, 915, 918, 921
FokI GGATG 3 cut(s) 347, 545, 713
FriOI GRGCYC 1 cut(s) 844
Fsp4HI GCNGC 9 cut(s) 116, 119, 228, 387, 663, 873, 915, 918, 921
FspBI CTAG 2 cut(s) 456, 792
GlaI GCGC 3 cut(s) 379, 956, 1005
GluI GCNGC 9 cut(s) 116, 119, 228, 387, 663, 873, 915, 918, 921
GsuI CTGGAG 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 381
HaeIII GGCC 3 cut(s) 354, 1080, 1157
HhaI GCGC 3 cut(s) 380, 957, 1006
Hin1II CATG 6 cut(s) 671, 839, 974, 1112, 1156, 1177
Hin6I GCGC 3 cut(s) 378, 955, 1004
HinP1I GCGC 3 cut(s) 378, 955, 1004
HincII GTYRAC 1 cut(s) 1180
HindII GTYRAC 1 cut(s) 1180
HindIII AAGCTT 2 cut(s) 303, 392
HinfI GANTC 2 cut(s) 82, 763
HphI GGTGA 3 cut(s) 413, 612, 1127
Hpy166II GTNNAC 2 cut(s) 182, 1180
Hpy188I TCNGA 3 cut(s) 444, 553, 1189
Hpy188III TCNNGA 6 cut(s) 40, 63, 213, 575, 760, 902
Hpy8I GTNNAC 2 cut(s) 182, 1180
HpyAV CCTTC 7 cut(s) 37, 43, 584, 730, 862, 1017, 1133
HpyCH4III ACNGT 4 cut(s) 154, 190, 941, 1043
HpyCH4IV ACGT 2 cut(s) 24, 690
HpyCH4V TGCA 9 cut(s) 386, 662, 688, 826, 914, 920, 1046, 1108, 1148
HpyF10VI GCNNNNNNNGC 7 cut(s) 94, 124, 386, 914, 920, 1149, 1154
HpyF3I CTNAG 6 cut(s) 77, 328, 390, 573, 606, 876
HpySE526I ACGT 2 cut(s) 24, 690
Hsp92II CATG 6 cut(s) 671, 839, 974, 1112, 1156, 1177
HspAI GCGC 3 cut(s) 378, 955, 1004
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 6 cut(s) 139, 274, 460, 596, 756, 963
LmnI GCTCC 2 cut(s) 224, 839
Lsp1109I GCAGC 8 cut(s) 127, 130, 214, 398, 674, 904, 926, 932
LweI GCATC 1 cut(s) 18
MaeI CTAG 2 cut(s) 456, 792
MaeII ACGT 2 cut(s) 24, 690
MaeIII GTNAC 4 cut(s) 256, 337, 1086, 1205
MalI GATC 6 cut(s) 141, 276, 462, 598, 758, 965
MboI GATC 6 cut(s) 139, 274, 460, 596, 756, 963
MflI RGATCY 2 cut(s) 139, 963
MhlI GDGCHC 1 cut(s) 844
MluCI AATT 3 cut(s) 418, 434, 781
Mph1103I ATGCAT 1 cut(s) 1110
MseI TTAA 2 cut(s) 747, 1216
MslI CAYNNNNRTG 1 cut(s) 1113
MspA1I CMGCKG 2 cut(s) 709, 917
MspCI CTTAAG 1 cut(s) 746
MspR9I CCNGG 3 cut(s) 846, 1195, 1203
MvaI CCWGG 3 cut(s) 846, 1195, 1203
MvnI CGCG 2 cut(s) 564, 957
MwoI GCNNNNNNNGC 7 cut(s) 94, 124, 386, 914, 920, 1149, 1154
NdeI CATATG 1 cut(s) 991
NdeII GATC 6 cut(s) 139, 274, 460, 596, 756, 963
NlaIII CATG 6 cut(s) 671, 839, 974, 1112, 1156, 1177
NlaIV GGNNCC 5 cut(s) 742, 841, 938, 1081, 1199
NmeAIII GCCGAG 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 1110
PasI CCCWGGG 1 cut(s) 845
PfeI GAWTC 2 cut(s) 82, 763
PflFI GACNNNGTC 1 cut(s) 1175
PkrI GCNGC 9 cut(s) 117, 120, 229, 388, 664, 874, 916, 919, 922
Ppu21I YACGTR 1 cut(s) 691
Psp6I CCWGG 3 cut(s) 844, 1193, 1201
PspGI CCWGG 3 cut(s) 844, 1193, 1201
PspN4I GGNNCC 5 cut(s) 742, 841, 938, 1081, 1199
PspPI GGNCC 2 cut(s) 129, 1079
PstI CTGCAG 1 cut(s) 922
PsuI RGATCY 2 cut(s) 139, 963
PsyI GACNNNGTC 1 cut(s) 1175
PvuII CAGCTG 2 cut(s) 709, 917
RsaI GTAC 2 cut(s) 527, 653
RsaNI GTAC 2 cut(s) 526, 652
RseI CAYNNNNRTG 1 cut(s) 1113
Rsr2I CGGWCCG 1 cut(s) 129
RsrII CGGWCCG 1 cut(s) 129
SalI GTCGAC 1 cut(s) 1178
SaqAI TTAA 2 cut(s) 747, 1216
SatI GCNGC 9 cut(s) 116, 119, 228, 387, 663, 873, 915, 918, 921
Sau3AI GATC 6 cut(s) 139, 274, 460, 596, 756, 963
Sau96I GGNCC 2 cut(s) 129, 1079
ScrFI CCNGG 3 cut(s) 846, 1195, 1203
SduI GDGCHC 1 cut(s) 844
SfaNI GCATC 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 918
SinI GGWCC 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 1113
SmlI CTYRAG 3 cut(s) 122, 746, 950
SmoI CTYRAG 3 cut(s) 122, 746, 950
Sse9I AATT 3 cut(s) 418, 434, 781
SsiI CCGC 6 cut(s) 5, 127, 132, 562, 623, 872
SspMI CTAG 2 cut(s) 456, 792
StyD4I CCNGG 3 cut(s) 844, 1193, 1201
TaaI ACNGT 4 cut(s) 154, 190, 941, 1043
TaiI ACGT 2 cut(s) 27, 693
TaqI TCGA 2 cut(s) 18, 1179
TasI AATT 3 cut(s) 418, 434, 781
TatI WGTACW 1 cut(s) 525
TauI GCSGC 1 cut(s) 875
TfiI GAWTC 2 cut(s) 82, 763
Tru1I TTAA 2 cut(s) 747, 1216
Tru9I TTAA 2 cut(s) 747, 1216
TseI GCWGC 8 cut(s) 115, 118, 227, 386, 662, 914, 917, 920
Tth111I GACNNNGTC 1 cut(s) 1175
Vha464I CTTAAG 1 cut(s) 746
VpaK11BI GGWCC 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 1179
XspI CTAG 2 cut(s) 456, 792
Zsp2I ATGCAT 1 cut(s) 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.