Prupe.3G156300_v2.0.a1

lanC-like protein GCL2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0021907
Physical Location & Seq
Forward (+)
17454300 .. 17456265
1966 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G156300.1

Sequence Viewer

Length: 1242 bp
ATGGCGGACCGGTTCTTCCCAAATATAATGCCAGATTTCGTAGCCGAAACTCCAACTTTACCAACCCAAGAAGCAGAACCCGAAATTGGGTCTGGCTCACTCATGAAACTCCTCTCCATGGCTTACCCATCTCTCTCCGAGCGCTTCAAGCGCACAGCTTTGGACCTCAAAGAAACCATACTCACAGAGACATTGGGAGCCACTGGTCAACACGTCCATGACTTCACTCTCTACTCTGGGGCTCTGGGCACTGCCCTTTTGCTCTTCAAATCTTACCAAGTCACCAGCAACACGAATGATCTGAGTCTTTGTTCTCAGATTATCAAGGCCTGTGACTCTGCTTCTCTTGGTTCAAGGGATGTGACATTCATATGTGGCAGAGCCGGTGTTTGTGCTCTTGGGGCTGTTGCAGCAAAGCACCTCGGTGACTCTGCTTCTCTTGATTATTATTTAACCCAGTTTAGGGAGATTAAGCTGTCAAGAAATCTCCCTGATGAATTGTTGTATGGGAAAGTTGGGTTTTTGTGGGCTTGCTTGTTTTTGAACAAACATCTTGGTGAGGGTACAATTTCTTCAGCATACATGAGAGCAGTTGTGGATGAAATTATCAAGAACGGCCGAGCATTGGGCAAGAGAGGAAGATGCCCCTTGATGTTTGAATGGTATGGGGAGAAGTATTGGGGAGCTGCACATGGATTGGCAGGGATTATGGATGTTTTGATGGACATGGAATTGAAGCCAGACGAGGTTGAAGATGTTAAGGGTACTCTCAAATACATGATCGATAATCGCTTTCCTAGTGGTAACTACCCTGCTAGTGAAGAAGATAAAAACAGAGATGTTCTTGTTCACTGGTGTCATGGAGCTCCTGGAATTTCCCTCACTCTTGCAAAAGCTGCAAAGGTTTTTGGAGATAAAGAATTTATGGAAGCGGCGGTTGATGCAGCAGAGGTGGTGTGGAAACGCGGACTGCTAAAGCGAGTTGGCATTTGCCATGGCATTAGTGGGAATGCATATGTGTTCCTTTCGCTCTACCAACTGACAGGAAATCTAGGGTTCTTATACAGAGCCAAAGCTTTTGCGTGTTTTCTAGTTGATAGAGCTCACAAGCTTATATCGGAGGGAGAGCTCCATAGAGGTGATAGCCCTTACTCCTTGTTTGAAGGGGTTGGCGGTATGGCTTATCTTCTTTTGGACATGATTGAACCTTCTCAGGCAAAGTTTCCTGCTTACGAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LANC_like

Protein Analysis

414

Amino Acids

45.47

Weight (kDa)

5.85

Isoelectric Point (pI)

28.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021907)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G20770
malus_domestica MD09G1251300.v1.1
prunus_persica Prupe.3G156300_v2.0.a1
pyrus_communis pycom09g16770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 966
AciI CCGC 5 cut(s) 5, 932, 935, 966, 1173
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 2 cut(s) 873, 920
AcuI CTGAAG 1 cut(s) 558
AfaI GTAC 2 cut(s) 565, 766
AfeI AGCGCT 1 cut(s) 143
AfiI CCNNNNNNNGG 6 cut(s) 86, 87, 118, 462, 463, 625
AflIII ACRYGT 1 cut(s) 211
AgeI ACCGGT 1 cut(s) 9
AgsI TTSAA 9 cut(s) 148, 268, 354, 544, 659, 736, 752, 1163, 1205
AjiI CACGTC 1 cut(s) 214
AjnI CCWGG 1 cut(s) 868
AjuI GAANNNNNNNTTGG 2 cut(s) 69, 101
AleI CACNNNNGTG 1 cut(s) 423
AluBI AGCT 9 cut(s) 158, 475, 686, 866, 896, 1076, 1103, 1111, 1129
AluI AGCT 9 cut(s) 158, 475, 686, 866, 896, 1076, 1103, 1111, 1129
Alw21I GWGCWC 4 cut(s) 397, 868, 1105, 1131
Alw26I GTCTC 1 cut(s) 182
Aor51HI AGCGCT 1 cut(s) 143
AoxI GGCC 2 cut(s) 327, 616
ApeKI GCWGC 4 cut(s) 410, 686, 896, 944
ApoI RAATTY 2 cut(s) 873, 920
AsiGI ACCGGT 1 cut(s) 9
AspLEI GCGC 2 cut(s) 144, 153
AspS9I GGNCC 2 cut(s) 7, 163
AsuHPI GGTGA 4 cut(s) 274, 437, 569, 1151
AvaII GGWCC 2 cut(s) 7, 163
BaeGI GKGCMC 1 cut(s) 251
BanII GRGCYC 4 cut(s) 244, 868, 1105, 1131
BarI GAAGNNNNNNTAC 2 cut(s) 556, 588
Bbv12I GWGCWC 4 cut(s) 397, 868, 1105, 1131
BbvI GCAGC 4 cut(s) 422, 673, 883, 956
BccI CCATC 2 cut(s) 136, 715
BceAI ACGGC 1 cut(s) 631
BciT130I CCWGG 1 cut(s) 870
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 4 cut(s) 798, 816, 1052, 1091
BfoI RGCGCY 1 cut(s) 145
BisI GCNGC 5 cut(s) 411, 687, 897, 933, 945
BlsI GCNGC 5 cut(s) 412, 688, 898, 934, 946
Bme1390I CCNGG 1 cut(s) 870
Bme18I GGWCC 2 cut(s) 7, 163
BmgBI CACGTC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 7, 163
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 870
BmrI ACTGGG 1 cut(s) 451
BmsI GCATC 2 cut(s) 632, 931
BmuI ACTGGG 1 cut(s) 451
Bsa29I ATCGAT 1 cut(s) 783
BsaJI CCNNGG 3 cut(s) 117, 421, 994
BsaWI WCCGGW 1 cut(s) 9
Bsc4I CCNNNNNNNGG 6 cut(s) 86, 87, 118, 462, 463, 625
Bse118I RCCGGY 2 cut(s) 9, 383
Bse1I ACTGG 3 cut(s) 208, 457, 857
BseBI CCWGG 1 cut(s) 870
BseCI ATCGAT 1 cut(s) 783
BseDI CCNNGG 3 cut(s) 117, 421, 994
BseGI GGATG 3 cut(s) 364, 604, 718
BseLI CCNNNNNNNGG 6 cut(s) 86, 87, 118, 462, 463, 625
BseMII CTCAG 3 cut(s) 293, 329, 1226
BseNI ACTGG 3 cut(s) 208, 457, 857
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 251
BseX3I CGGCCG 1 cut(s) 616
BseXI GCAGC 4 cut(s) 422, 673, 883, 956
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 1 cut(s) 966
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 2 cut(s) 329, 618
BshTI ACCGGT 1 cut(s) 9
BshVI ATCGAT 1 cut(s) 783
BsiEI CGRYCG 1 cut(s) 619
BsiHKAI GWGCWC 4 cut(s) 397, 868, 1105, 1131
BsiSI CCGG 2 cut(s) 10, 384
BslI CCNNNNNNNGG 6 cut(s) 86, 87, 118, 462, 463, 625
BsmAI GTCTC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 2 cut(s) 329, 618
Bsp1286I GDGCHC 6 cut(s) 244, 251, 397, 868, 1105, 1131
Bsp143I GATC 2 cut(s) 298, 780
Bsp19I CCATGG 2 cut(s) 117, 994
BspACI CCGC 5 cut(s) 5, 932, 935, 966, 1173
BspANI GGCC 2 cut(s) 329, 618
BspCNI CTCAG 3 cut(s) 294, 328, 1225
BspDI ATCGAT 1 cut(s) 783
BspFNI CGCG 1 cut(s) 966
BspHI TCATGA 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 199
BspQI GCTCTTC 1 cut(s) 269
BsrFI RCCGGY 2 cut(s) 9, 383
BsrI ACTGG 3 cut(s) 208, 457, 857
BssAI RCCGGY 2 cut(s) 9, 383
BssECI CCNNGG 3 cut(s) 117, 421, 994
BssMI GATC 2 cut(s) 298, 780
BssT1I CCWWGG 2 cut(s) 117, 994
Bst2UI CCWGG 1 cut(s) 870
Bst4CI ACNGT 1 cut(s) 1239
Bst6I CTCTTC 1 cut(s) 269
BstAPI GCANNNNNTGC 1 cut(s) 896
BstC8I GCNNGC 1 cut(s) 532
BstDEI CTNAG 3 cut(s) 302, 315, 1212
BstDSI CCRYGG 2 cut(s) 117, 994
BstF5I GGATG 3 cut(s) 364, 604, 718
BstFNI CGCG 1 cut(s) 966
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 2 cut(s) 144, 153
BstKTI GATC 2 cut(s) 301, 783
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 298, 780
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 6 cut(s) 148, 150, 401, 410, 896, 941
BstNI CCWGG 1 cut(s) 870
BstSCI CCNGG 1 cut(s) 868
BstSLI GKGCMC 1 cut(s) 251
BstUI CGCG 1 cut(s) 966
BstV1I GCAGC 4 cut(s) 422, 673, 883, 956
BstZI CGGCCG 1 cut(s) 616
Bsu15I ATCGAT 1 cut(s) 783
BsuRI GGCC 2 cut(s) 329, 618
BsuTUI ATCGAT 1 cut(s) 783
BtgI CCRYGG 2 cut(s) 117, 994
BtrI CACGTC 1 cut(s) 214
BtsCI GGATG 3 cut(s) 364, 604, 718
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 201, 249, 850
Cac8I GCNNGC 1 cut(s) 532
CciI TCATGA 1 cut(s) 102
CfoI GCGC 2 cut(s) 144, 153
Cfr10I RCCGGY 2 cut(s) 9, 383
Cfr13I GGNCC 2 cut(s) 7, 163
ClaI ATCGAT 1 cut(s) 783
CpoI CGGWCCG 1 cut(s) 7
Csp6I GTAC 2 cut(s) 564, 765
CspAI ACCGGT 1 cut(s) 9
CspI CGGWCCG 1 cut(s) 7
CviQI GTAC 2 cut(s) 564, 765
DdeI CTNAG 3 cut(s) 302, 315, 1212
DpnI GATC 2 cut(s) 300, 782
DpnII GATC 2 cut(s) 298, 780
EaeI YGGCCR 1 cut(s) 616
EagI CGGCCG 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 3 cut(s) 866, 1103, 1129
EclXI CGGCCG 1 cut(s) 616
Eco130I CCWWGG 2 cut(s) 117, 994
Eco147I AGGCCT 1 cut(s) 329
Eco24I GRGCYC 4 cut(s) 244, 868, 1105, 1131
Eco47I GGWCC 2 cut(s) 7, 163
Eco47III AGCGCT 1 cut(s) 143
Eco52I CGGCCG 1 cut(s) 616
Eco53kI GAGCTC 3 cut(s) 866, 1103, 1129
Eco57I CTGAAG 1 cut(s) 558
EcoICRI GAGCTC 3 cut(s) 866, 1103, 1129
EcoRII CCWGG 1 cut(s) 868
EcoT14I CCWWGG 2 cut(s) 117, 994
EcoT22I ATGCAT 1 cut(s) 1015
EcoT38I GRGCYC 4 cut(s) 244, 868, 1105, 1131
ErhI CCWWGG 2 cut(s) 117, 994
FauNDI CATATG 2 cut(s) 371, 1015
Fnu4HI GCNGC 5 cut(s) 411, 687, 897, 933, 945
FokI GGATG 3 cut(s) 371, 611, 725
FriOI GRGCYC 4 cut(s) 244, 868, 1105, 1131
Fsp4HI GCNGC 5 cut(s) 411, 687, 897, 933, 945
FspBI CTAG 4 cut(s) 798, 816, 1052, 1091
GlaI GCGC 2 cut(s) 143, 152
GluI GCNGC 5 cut(s) 411, 687, 897, 933, 945
HaeII RGCGCY 1 cut(s) 145
HaeIII GGCC 2 cut(s) 329, 618
HapII CCGG 2 cut(s) 10, 384
HhaI GCGC 2 cut(s) 144, 153
Hin6I GCGC 2 cut(s) 142, 151
HinP1I GCGC 2 cut(s) 142, 151
HincII GTYRAC 1 cut(s) 209
HindII GTYRAC 1 cut(s) 209
HindIII AAGCTT 2 cut(s) 1074, 1109
HinfI GANTC 3 cut(s) 304, 335, 428
HpaII CCGG 2 cut(s) 10, 384
HphI GGTGA 4 cut(s) 274, 437, 569, 1151
Hpy166II GTNNAC 2 cut(s) 209, 850
Hpy188I TCNGA 4 cut(s) 139, 303, 318, 1120
Hpy188III TCNNGA 4 cut(s) 103, 440, 480, 610
Hpy8I GTNNAC 2 cut(s) 209, 850
HpyAV CCTTC 2 cut(s) 1157, 1218
HpyCH4III ACNGT 1 cut(s) 1239
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 6 cut(s) 410, 689, 890, 899, 944, 1013
HpyF10VI GCNNNNNNNGC 6 cut(s) 148, 150, 401, 410, 896, 941
HpyF3I CTNAG 3 cut(s) 302, 315, 1212
HpySE526I ACGT 1 cut(s) 213
HspAI GCGC 2 cut(s) 142, 151
Kzo9I GATC 2 cut(s) 298, 780
LguI GCTCTTC 1 cut(s) 269
LmnI GCTCC 5 cut(s) 197, 683, 863, 871, 1134
Lsp1109I GCAGC 4 cut(s) 422, 673, 883, 956
LweI GCATC 2 cut(s) 632, 931
MaeI CTAG 4 cut(s) 798, 816, 1052, 1091
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 5 cut(s) 280, 332, 361, 425, 803
MalI GATC 2 cut(s) 300, 782
MboI GATC 2 cut(s) 298, 780
MboII GAAGA 8 cut(s) 7, 256, 564, 651, 764, 833, 836, 1178
MhlI GDGCHC 6 cut(s) 244, 251, 397, 868, 1105, 1131
MluCI AATT 7 cut(s) 84, 497, 567, 603, 731, 873, 920
MlyI GAGTC 3 cut(s) 313, 329, 422
MmeI TCCRAC 1 cut(s) 77
Mph1103I ATGCAT 1 cut(s) 1015
MseI TTAA 3 cut(s) 452, 471, 759
MslI CAYNNNNRTG 5 cut(s) 216, 370, 423, 555, 1137
MspI CCGG 2 cut(s) 10, 384
MspR9I CCNGG 1 cut(s) 870
Mva1269I GAATGC 1 cut(s) 1015
MvaI CCWGG 1 cut(s) 870
MvnI CGCG 1 cut(s) 966
MwoI GCNNNNNNNGC 6 cut(s) 148, 150, 401, 410, 896, 941
NcoI CCATGG 2 cut(s) 117, 994
NdeI CATATG 2 cut(s) 371, 1015
NdeII GATC 2 cut(s) 298, 780
NlaIV GGNNCC 1 cut(s) 199
NmeAIII GCCGAG 1 cut(s) 644
NmuCI GTSAC 4 cut(s) 280, 332, 361, 425
NsiI ATGCAT 1 cut(s) 1015
OliI CACNNNNGTG 1 cut(s) 423
PagI TCATGA 1 cut(s) 102
PceI AGGCCT 1 cut(s) 329
PciSI GCTCTTC 1 cut(s) 269
PctI GAATGC 1 cut(s) 1015
PfoI TCCNGGA 1 cut(s) 868
PinAI ACCGGT 1 cut(s) 9
PkrI GCNGC 5 cut(s) 412, 688, 898, 934, 946
PleI GAGTC 3 cut(s) 312, 329, 422
PpsI GAGTC 3 cut(s) 312, 329, 422
Psp124BI GAGCTC 3 cut(s) 868, 1105, 1131
Psp6I CCWGG 1 cut(s) 868
PspGI CCWGG 1 cut(s) 868
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 7, 163
RsaI GTAC 2 cut(s) 565, 766
RsaNI GTAC 2 cut(s) 564, 765
RseI CAYNNNNRTG 5 cut(s) 216, 370, 423, 555, 1137
Rsr2I CGGWCCG 1 cut(s) 7
RsrII CGGWCCG 1 cut(s) 7
SacI GAGCTC 3 cut(s) 868, 1105, 1131
SapI GCTCTTC 1 cut(s) 269
SaqAI TTAA 3 cut(s) 452, 471, 759
SatI GCNGC 5 cut(s) 411, 687, 897, 933, 945
Sau3AI GATC 2 cut(s) 298, 780
Sau96I GGNCC 2 cut(s) 7, 163
SchI GAGTC 3 cut(s) 313, 329, 422
ScrFI CCNGG 1 cut(s) 870
SduI GDGCHC 6 cut(s) 244, 251, 397, 868, 1105, 1131
SfaNI GCATC 2 cut(s) 632, 931
SinI GGWCC 2 cut(s) 7, 163
SmiMI CAYNNNNRTG 5 cut(s) 216, 370, 423, 555, 1137
Sse9I AATT 7 cut(s) 84, 497, 567, 603, 731, 873, 920
SseBI AGGCCT 1 cut(s) 329
SsiI CCGC 5 cut(s) 5, 932, 935, 966, 1173
SspMI CTAG 4 cut(s) 798, 816, 1052, 1091
SstI GAGCTC 3 cut(s) 868, 1105, 1131
StuI AGGCCT 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 868
StyI CCWWGG 2 cut(s) 117, 994
TaaI ACNGT 1 cut(s) 1239
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 783
TasI AATT 7 cut(s) 84, 497, 567, 603, 731, 873, 920
TauI GCSGC 1 cut(s) 935
Tru1I TTAA 3 cut(s) 452, 471, 759
Tru9I TTAA 3 cut(s) 452, 471, 759
TscAI CASTG 3 cut(s) 208, 256, 857
TseFI GTSAC 4 cut(s) 280, 332, 361, 425
TseI GCWGC 4 cut(s) 410, 686, 896, 944
Tsp45I GTSAC 4 cut(s) 280, 332, 361, 425
TspDTI ATGAA 4 cut(s) 119, 358, 510, 615
TspRI CASTG 3 cut(s) 208, 256, 857
VpaK11BI GGWCC 2 cut(s) 7, 163
XapI RAATTY 2 cut(s) 873, 920
XcmI CCANNNNNNNNNTGG 1 cut(s) 1001
XspI CTAG 4 cut(s) 798, 816, 1052, 1091
Zsp2I ATGCAT 1 cut(s) 1015
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.