Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017069

Physical Location & Seq

Genomic Coordinates Reverse (-)

9036766 .. 9037782

Gene Structure 1017 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGCGGAGGAGGAGACGTGAACATGAGTGGTGGAGACAGACGCAAGGGAACGGTGAAGTGGTTTGATACACAGAAGGGGTTTGGTTTCATCACACCTAGCGACGGTGGTGACGATCTCTTCGTTCACCAGTCTTCCATCAGATCTGAAGGATTTCGTAGCCTCGCAGCTGAGGAATCTGTTGAGTTCGACGTTGAGGTTGACAACTCCGGCCGTCCCAAGGCTATTGAAGTGTCTGGACCCGACGGTGCTCCCGTTCAGGGTAACAGCGGTGGTGGTGGTTCATCTGGTGGACGCGGTGGTTTTGGCGGCGGTGGTGGAAGAGGAGGGGGACGTGGTGGAGGAAGCTACGGAGGAGGTTATGGTGGAAGAGGAAGCGGTGGCCGTGGAGGAGGTGGTGGTGATAATTCTTGCTTTAAGTGCGGTGAACCAGGTCACATGGCGAGAGAATGCTCTCAAGGTGGTGGAGGATACAGCGGAGGCGGGGGTGGTGGAAGGTACGGGTCTGGCGGCGGCGGAGGAGGAGGTGGTGGTGGCTTAAGCTGCTACAGCTGTGGAGAGTCTGGGCACTTTGCAAGGGATTGCACTAGCGGTGGTGCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010228 GO:0016020 GO:0016043 GO:0019222 GO:0022414 GO:0031323 GO:0031974 GO:0031981 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043457 GO:0043467 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0061458 GO:0065007 GO:0070013 GO:0071103 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

201

Amino Acids

19.08

Weight (kDa)

6.29

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	16 - 80	9.7e-26	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	137 - 153	7.5e-08	Zinc knuckle
zf-CCHC	PF00098	182 - 197	5.2e-08	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21060 AT4G38680
fragaria_vesca	FvH4_2g01580
malus_domestica	MD10G1121500.v1.1
prunus_persica	Prupe.8G163000_v2.0.a1
pyrus_communis	pycom05g11220
rosa_chinensis	RchiOBHm_Chr6g0244251
rosa_laevigata	RLG00000015370
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6BG018600 Rh6CG015700 Rh6DG016900
rosa_wichuraiana	Rw6G001890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	1 cut(s)	297
AcoI	YGGCCR	2 cut(s)	211, 382
AcuI	CTGAAG	1 cut(s)	168
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	104, 220, 260
AflII	CTTAAG	1 cut(s)	538
AgsI	TTSAA	1 cut(s)	230
AjiI	CACGTC	2 cut(s)	19, 335
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	4 cut(s)	170, 348, 543, 552
AluI	AGCT	4 cut(s)	170, 348, 543, 552
Alw21I	GWGCWC	2 cut(s)	253, 601
Alw26I	GTCTC	2 cut(s)	9, 30
AoxI	GGCC	2 cut(s)	211, 382
ApeKI	GCWGC	2 cut(s)	167, 543
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	239
AsuHPI	GGTGA	5 cut(s)	67, 119, 122, 413, 437
AvaII	GGWCC	1 cut(s)	239
BaeGI	GKGCMC	1 cut(s)	570
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	2 cut(s)	253, 601
BbvCI	CCTCAGC	1 cut(s)	171
BbvI	GCAGC	2 cut(s)	179, 530
BccI	CCATC	1 cut(s)	146
BceAI	ACGGC	2 cut(s)	198, 369
BciT130I	CCWGG	1 cut(s)	432
BciVI	GTATCC	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	9, 30
BfaI	CTAG	2 cut(s)	99, 588
BfmI	CTRYAG	1 cut(s)	547
BfrI	CTTAAG	1 cut(s)	538
BfuI	GTATCC	1 cut(s)	464
BglII	AGATCT	1 cut(s)	143
BisI	GCNGC	5 cut(s)	168, 310, 511, 514, 544
BlsI	GCNGC	5 cut(s)	169, 311, 512, 515, 545
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	239
BmgBI	CACGTC	2 cut(s)	19, 335
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	441
BsaJI	CCNNGG	2 cut(s)	219, 385
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	3 cut(s)	104, 220, 260
Bse1I	ACTGG	1 cut(s)	130
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	2 cut(s)	219, 385
BseLI	CCNNNNNNNGG	3 cut(s)	104, 220, 260
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	7 cut(s)	24, 27, 339, 369, 405, 534, 537
BseSI	GKGCMC	1 cut(s)	570
BseX3I	CGGCCG	1 cut(s)	211
BseXI	GCAGC	2 cut(s)	179, 530
Bsh1236I	CGCG	1 cut(s)	297
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	2 cut(s)	213, 384
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	2 cut(s)	253, 601
BsiSI	CCGG	1 cut(s)	210
BslFI	GGGAC	2 cut(s)	201, 345
BslI	CCNNNNNNNGG	3 cut(s)	104, 220, 260
BsmAI	GTCTC	2 cut(s)	9, 30
BsmBI	CGTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	201, 345
BsmI	GAATGC	1 cut(s)	455
BsnI	GGCC	2 cut(s)	213, 384
Bsp1286I	GDGCHC	3 cut(s)	253, 570, 601
Bsp143I	GATC	2 cut(s)	115, 143
BspANI	GGCC	2 cut(s)	213, 384
BspCNI	CTCAG	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	241
BspTI	CTTAAG	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	6
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	219, 385
BssMI	GATC	2 cut(s)	115, 143
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	55, 107, 248
Bst6I	CTCTTC	3 cut(s)	125, 316, 364
BstAFI	CTTAAG	1 cut(s)	538
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	297
BstKTI	GATC	2 cut(s)	118, 146
BstMAI	GTCTC	2 cut(s)	9, 30
BstMBI	GATC	2 cut(s)	115, 143
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	420, 543, 549
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	1 cut(s)	547
BstSLI	GKGCMC	1 cut(s)	570
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	179, 530
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	143
BstYI	RGATCY	1 cut(s)	143
BstZI	CGGCCG	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	464
BsuRI	GGCC	2 cut(s)	213, 384
BtgI	CCRYGG	1 cut(s)	385
BtrI	CACGTC	2 cut(s)	19, 335
Cfr13I	GGNCC	1 cut(s)	239
CseI	GACGC	2 cut(s)	51, 303
CsiI	ACCWGGT	1 cut(s)	430
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	2 cut(s)	25, 439
CviJI	RGCY	9 cut(s)	162, 170, 213, 224, 348, 384, 537, 543, 552
CviKI_1	RGCY	9 cut(s)	162, 170, 213, 224, 348, 384, 537, 543, 552
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	2 cut(s)	117, 145
DpnII	GATC	2 cut(s)	115, 143
EaeI	YGGCCR	2 cut(s)	211, 382
EagI	CGGCCG	1 cut(s)	211
Eam1104I	CTCTTC	3 cut(s)	125, 316, 364
EarI	CTCTTC	3 cut(s)	125, 316, 364
EciI	GGCGGA	1 cut(s)	531
EclXI	CGGCCG	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	219
Eco47I	GGWCC	1 cut(s)	239
Eco52I	CGGCCG	1 cut(s)	211
Eco57I	CTGAAG	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	219
Esp3I	CGTCTC	1 cut(s)	9
FaeI	CATG	2 cut(s)	28, 442
FaiI	YATR	3 cut(s)	26, 363, 440
FaqI	GGGAC	2 cut(s)	201, 345
FatI	CATG	2 cut(s)	24, 438
FauI	CCCGC	1 cut(s)	476
Fnu4HI	GCNGC	5 cut(s)	168, 310, 511, 514, 544
Fsp4HI	GCNGC	5 cut(s)	168, 310, 511, 514, 544
FspBI	CTAG	2 cut(s)	99, 588
GluI	GCNGC	5 cut(s)	168, 310, 511, 514, 544
HaeIII	GGCC	2 cut(s)	213, 384
HapII	CCGG	1 cut(s)	210
HgaI	GACGC	2 cut(s)	51, 303
Hin1II	CATG	2 cut(s)	28, 442
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	176, 560
HpaII	CCGG	1 cut(s)	210
HphI	GGTGA	5 cut(s)	67, 119, 122, 413, 437
Hpy166II	GTNNAC	5 cut(s)	22, 127, 202, 293, 428
Hpy188I	TCNGA	2 cut(s)	143, 148
Hpy188III	TCNNGA	1 cut(s)	237
Hpy8I	GTNNAC	5 cut(s)	22, 127, 202, 293, 428
Hpy99I	CGWCG	3 cut(s)	107, 194, 248
HpyAV	CCTTC	3 cut(s)	70, 143, 489
HpyCH4III	ACNGT	3 cut(s)	55, 107, 248
HpyCH4IV	ACGT	3 cut(s)	18, 192, 334
HpyCH4V	TGCA	2 cut(s)	575, 585
HpyF10VI	GCNNNNNNNGC	3 cut(s)	420, 543, 549
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	3 cut(s)	18, 192, 334
Hsp92II	CATG	2 cut(s)	28, 442
Kzo9I	GATC	2 cut(s)	115, 143
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	9 cut(s)	143, 222, 223, 245, 273, 417, 444, 492, 549
Lsp1109I	GCAGC	2 cut(s)	179, 530
MabI	ACCWGGT	1 cut(s)	430
MaeI	CTAG	2 cut(s)	99, 588
MaeII	ACGT	3 cut(s)	18, 192, 334
MaeIII	GTNAC	3 cut(s)	110, 263, 434
MalI	GATC	2 cut(s)	117, 145
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	2 cut(s)	115, 143
MboII	GAAGA	4 cut(s)	112, 126, 333, 381
MflI	RGATCY	1 cut(s)	143
MhlI	GDGCHC	3 cut(s)	253, 570, 601
MluCI	AATT	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	569
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	2 cut(s)	417, 539
MspA1I	CMGCKG	4 cut(s)	170, 270, 477, 552
MspCI	CTTAAG	1 cut(s)	538
MspI	CCGG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	432
Mva1269I	GAATGC	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	420, 543, 549
NdeII	GATC	2 cut(s)	115, 143
NlaIII	CATG	2 cut(s)	28, 442
NlaIV	GGNNCC	1 cut(s)	241
NmuCI	GTSAC	2 cut(s)	110, 434
PcsI	WCGNNNNNNNCGW	3 cut(s)	111, 120, 252
PctI	GAATGC	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	169, 311, 512, 515, 545
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	241
PspPI	GGNCC	1 cut(s)	239
PsuI	RGATCY	1 cut(s)	143
PvuII	CAGCTG	2 cut(s)	170, 552
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SaqAI	TTAA	2 cut(s)	417, 539
SatI	GCNGC	5 cut(s)	168, 310, 511, 514, 544
Sau3AI	GATC	2 cut(s)	115, 143
Sau96I	GGNCC	1 cut(s)	239
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	3 cut(s)	253, 570, 601
SexAI	ACCWGGT	1 cut(s)	430
SfcI	CTRYAG	1 cut(s)	547
SinI	GGWCC	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	456, 538
SmoI	CTYRAG	2 cut(s)	456, 538
Sse9I	AATT	1 cut(s)	406
SspMI	CTAG	2 cut(s)	99, 588
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	219
TaaI	ACNGT	3 cut(s)	55, 107, 248
TaiI	ACGT	3 cut(s)	21, 195, 337
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	406
TauI	GCSGC	3 cut(s)	312, 513, 516
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	417, 539
Tru9I	TTAA	2 cut(s)	417, 539
TseFI	GTSAC	2 cut(s)	110, 434
TseI	GCWGC	2 cut(s)	167, 543
Tsp45I	GTSAC	2 cut(s)	110, 434
TspDTI	ATGAA	2 cut(s)	79, 273
TspGWI	ACGGA	1 cut(s)	366
Vha464I	CTTAAG	1 cut(s)	538
VpaK11BI	GGWCC	1 cut(s)	239
XmnI	GAANNNNTTC	1 cut(s)	153
XspI	CTAG	2 cut(s)	99, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.