Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0017069

Physical Location & Seq

Genomic Coordinates Forward (+)

19861371 .. 19861997

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1121500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAGTGAGAGACTGAGCGGCACCGTCAAGTGGTTCAATGACCAGAAGGGGTTCGGCTTCATAACCCCCAACGACGGTGGCGAGGATCTGTTTGTACACCAGTCCTCCATCCGATCCGAAGGTTTCCGCACTCTCGGAGACGGCGAGACGGTCGAGTACACCATCGAGGAGGATGCCGGTGGCCGAACCAAGGCTGTCGACGTGACTGGCCCAGAGGAGGGTCCCGTACAGGGTAGCCGTGGTGGCGGGGGTGGTGGCCGAGGCCGCGGAGGCGGTGGCGGAGGCTACGGCTTTAACGGTGGTTCTGGTGGACGTAGCGGTGGGGGTAGAGGTGGCCGTGGAAGCGGTGGGTACGGAGGTGGAAGCTACGGATCGGGCGGCGGTGGCTACGGAGGTGGTGGCGGGGGCTACGGAGGTGGAGGAGGTGGCGGTGGTGCGTGCTTCAAGTGTGGCGAATCCGGACACATGGCTAGGGACTGCTCTCAGGGAGGTGGAGGCTACGGCGGCGGTGGAGGCGGCTATGGCGGTGGCGGACGCGGCGGTGGAGGAGGCGGAGGTGCTTCCGGAGGCTGTTATCAGTGTGGTGAGTCGGGCCATTTCGCAAGGGAGTGCCCGAACAGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006996 GO:0007275 GO:0008150 GO:0009266 GO:0009269 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009631 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010033 GO:0010035 GO:0010154 GO:0010228 GO:0016020 GO:0016043 GO:0019222 GO:0022414 GO:0031323 GO:0031974 GO:0031981 GO:0032392 GO:0032501 GO:0032502 GO:0032508 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043457 GO:0043467 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0061458 GO:0065007 GO:0070013 GO:0071103 GO:0071840 GO:0071944 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CSD zf-CCHC

Protein Analysis

209

Amino Acids

19.47

Weight (kDa)

6.3

Isoelectric Point (pI)

55.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	6 - 70	1.1e-25	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	146 - 162	1.1e-07	Zinc knuckle
zf-CCHC	PF00098	190 - 206	6.3e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017069)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21060 AT4G38680
fragaria_vesca	FvH4_2g01580
malus_domestica	MD10G1121500.v1.1
prunus_persica	Prupe.8G163000_v2.0.a1
pyrus_communis	pycom05g11220
rosa_chinensis	RchiOBHm_Chr6g0244251
rosa_laevigata	RLG00000015370
rosa_rugosa	Rorug05G0507900
rosa_samantha	Rh6BG018600 Rh6CG015700 Rh6DG016900
rosa_wichuraiana	Rw6G001890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccBSI	CCGCTC	1 cut(s)	18
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	2 cut(s)	267, 537
AccIII	TCCGGA	2 cut(s)	458, 563
AclWI	GGATC	3 cut(s)	93, 108, 379
AcoI	YGGCCR	3 cut(s)	181, 256, 334
AfaI	GTAC	4 cut(s)	96, 158, 228, 353
AfiI	CCNNNNNNNGG	8 cut(s)	30, 74, 190, 217, 218, 230, 619, 620
AgsI	TTSAA	2 cut(s)	37, 445
AjiI	CACGTC	1 cut(s)	202
AluBI	AGCT	1 cut(s)	366
AluI	AGCT	1 cut(s)	366
Alw26I	GTCTC	3 cut(s)	4, 132, 140
AlwI	GGATC	3 cut(s)	93, 108, 379
Aor13HI	TCCGGA	2 cut(s)	458, 563
AoxI	GGCC	6 cut(s)	181, 208, 256, 262, 334, 592
Asp700I	GAANNNNTTC	1 cut(s)	50
AspS9I	GGNCC	3 cut(s)	209, 221, 592
AsuHPI	GGTGA	1 cut(s)	596
AvaII	GGWCC	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	614
BaeI	ACNNNNGTAYC	2 cut(s)	343, 376
BanI	GGYRCC	1 cut(s)	20
BccI	CCATC	2 cut(s)	116, 170
BceAI	ACGGC	5 cut(s)	157, 222, 304, 321, 517
BcgI	CGANNNNNNTGC	2 cut(s)	155, 189
BcoDI	GTCTC	3 cut(s)	4, 132, 140
BfaI	CTAG	1 cut(s)	471
BglI	GCCNNNNNGGC	2 cut(s)	243, 270
BisI	GCNGC	6 cut(s)	19, 265, 379, 505, 517, 538
BlsI	GCNGC	6 cut(s)	20, 266, 380, 506, 518, 539
Bme18I	GGWCC	1 cut(s)	221
BmgBI	CACGTC	1 cut(s)	202
BmgT120I	GGNCC	3 cut(s)	209, 221, 592
BmiI	GGNNCC	3 cut(s)	22, 222, 223
BmsI	GCATC	1 cut(s)	163
BsaJI	CCNNGG	5 cut(s)	189, 238, 259, 265, 337
BsaWI	WCCGGW	2 cut(s)	458, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	89, 119
Bsc4I	CCNNNNNNNGG	8 cut(s)	30, 74, 190, 217, 218, 230, 619, 620
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	2 cut(s)	100, 211
BseAI	TCCGGA	2 cut(s)	458, 563
BseDI	CCNNGG	5 cut(s)	189, 238, 259, 265, 337
BseGI	GGATG	2 cut(s)	108, 178
BseLI	CCNNNNNNNGG	8 cut(s)	30, 74, 190, 217, 218, 230, 619, 620
BseMII	CTCAG	2 cut(s)	5, 497
BseNI	ACTGG	2 cut(s)	100, 211
BseRI	GAGGAG	4 cut(s)	182, 230, 435, 561
BseSI	GKGCMC	1 cut(s)	614
Bsh1236I	CGCG	2 cut(s)	267, 537
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	6 cut(s)	183, 210, 258, 264, 336, 594
BshNI	GGYRCC	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	153
BsiSI	CCGG	3 cut(s)	177, 459, 564
BslFI	GGGAC	2 cut(s)	207, 488
BslI	CCNNNNNNNGG	8 cut(s)	30, 74, 190, 217, 218, 230, 619, 620
BsmAI	GTCTC	3 cut(s)	4, 132, 140
BsmBI	CGTCTC	2 cut(s)	132, 140
BsmFI	GGGAC	2 cut(s)	207, 488
BsnI	GGCC	6 cut(s)	183, 210, 258, 264, 336, 594
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp13I	TCCGGA	2 cut(s)	458, 563
Bsp1407I	TGTACA	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	85, 113, 371
BspANI	GGCC	6 cut(s)	183, 210, 258, 264, 336, 594
BspCNI	CTCAG	2 cut(s)	6, 496
BspEI	TCCGGA	2 cut(s)	458, 563
BspFNI	CGCG	2 cut(s)	267, 537
BspLI	GGNNCC	3 cut(s)	22, 222, 223
BspPI	GGATC	3 cut(s)	93, 108, 379
BspT107I	GGYRCC	1 cut(s)	20
BsrBI	CCGCTC	1 cut(s)	18
BsrFI	RCCGGY	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	100, 211
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	5 cut(s)	189, 238, 259, 265, 337
BssMI	GATC	3 cut(s)	85, 113, 371
BssT1I	CCWWGG	1 cut(s)	189
Bst4CI	ACNGT	4 cut(s)	25, 77, 151, 299
BstAUI	TGTACA	1 cut(s)	94
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	14, 483
BstDSI	CCRYGG	3 cut(s)	238, 265, 337
BstF5I	GGATG	2 cut(s)	108, 178
BstFNI	CGCG	2 cut(s)	267, 537
BstKTI	GATC	3 cut(s)	88, 116, 374
BstMAI	GTCTC	3 cut(s)	4, 132, 140
BstMBI	GATC	3 cut(s)	85, 113, 371
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	9 cut(s)	243, 264, 270, 342, 384, 504, 513, 522, 537
BstSLI	GKGCMC	1 cut(s)	614
BstUI	CGCG	2 cut(s)	267, 537
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BsuRI	GGCC	6 cut(s)	183, 210, 258, 264, 336, 594
BtgI	CCRYGG	3 cut(s)	238, 265, 337
BtrI	CACGTC	1 cut(s)	202
BtsCI	GGATG	2 cut(s)	108, 178
BtsIMutI	CAGTG	1 cut(s)	584
Cac8I	GCNNGC	1 cut(s)	439
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	209, 221, 592
Cfr42I	CCGCGG	1 cut(s)	268
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	4 cut(s)	95, 157, 227, 352
CspCI	CAANNNNNGTGG	2 cut(s)	58, 93
CviAII	CATG	1 cut(s)	466
CviQI	GTAC	4 cut(s)	95, 157, 227, 352
DdeI	CTNAG	2 cut(s)	14, 483
DpnI	GATC	3 cut(s)	87, 115, 373
DpnII	GATC	3 cut(s)	85, 113, 371
EaeI	YGGCCR	3 cut(s)	181, 256, 334
EciI	GGCGGA	3 cut(s)	294, 546, 567
Eco130I	CCWWGG	1 cut(s)	189
Eco47I	GGWCC	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	189
ErhI	CCWWGG	1 cut(s)	189
Esp3I	CGTCTC	2 cut(s)	132, 140
FaeI	CATG	1 cut(s)	469
FaiI	YATR	3 cut(s)	62, 467, 522
FaqI	GGGAC	2 cut(s)	207, 488
FatI	CATG	1 cut(s)	465
FauI	CCCGC	2 cut(s)	239, 395
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	6 cut(s)	19, 265, 379, 505, 517, 538
FokI	GGATG	2 cut(s)	95, 185
Fsp4HI	GCNGC	6 cut(s)	19, 265, 379, 505, 517, 538
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	6 cut(s)	19, 265, 379, 505, 517, 538
HaeIII	GGCC	6 cut(s)	183, 210, 258, 264, 336, 594
HapII	CCGG	3 cut(s)	177, 459, 564
HgaI	GACGC	1 cut(s)	543
Hin1II	CATG	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	455, 587
HpaII	CCGG	3 cut(s)	177, 459, 564
HphI	GGTGA	1 cut(s)	596
Hpy166II	GTNNAC	4 cut(s)	97, 159, 199, 311
Hpy188I	TCNGA	3 cut(s)	113, 118, 137
Hpy188III	TCNNGA	2 cut(s)	459, 564
Hpy8I	GTNNAC	4 cut(s)	97, 159, 199, 311
Hpy99I	CGWCG	2 cut(s)	77, 203
HpyAV	CCTTC	2 cut(s)	40, 113
HpyCH4III	ACNGT	4 cut(s)	25, 77, 151, 299
HpyCH4IV	ACGT	2 cut(s)	201, 313
HpyF10VI	GCNNNNNNNGC	9 cut(s)	243, 264, 270, 342, 384, 504, 513, 522, 537
HpyF3I	CTNAG	2 cut(s)	14, 483
HpySE526I	ACGT	2 cut(s)	201, 313
Hsp92II	CATG	1 cut(s)	469
KflI	GGGWCCC	1 cut(s)	221
Kpn2I	TCCGGA	2 cut(s)	458, 563
KspI	CCGCGG	1 cut(s)	268
Kzo9I	GATC	3 cut(s)	85, 113, 371
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	2 cut(s)	201, 313
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	3 cut(s)	87, 115, 373
MbiI	CCGCTC	1 cut(s)	18
MboI	GATC	3 cut(s)	85, 113, 371
MflI	RGATCY	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	614
MlyI	GAGTC	1 cut(s)	596
MroI	TCCGGA	2 cut(s)	458, 563
MroXI	GAANNNNTTC	1 cut(s)	50
MseI	TTAA	2 cut(s)	294, 625
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	3 cut(s)	177, 459, 564
MvnI	CGCG	2 cut(s)	267, 537
MwoI	GCNNNNNNNGC	9 cut(s)	243, 264, 270, 342, 384, 504, 513, 522, 537
NdeII	GATC	3 cut(s)	85, 113, 371
NlaIII	CATG	1 cut(s)	469
NlaIV	GGNNCC	3 cut(s)	22, 222, 223
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 141
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	455
PkrI	GCNGC	6 cut(s)	20, 266, 380, 506, 518, 539
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
PpuMI	RGGWCCY	1 cut(s)	221
Psp5II	RGGWCCY	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	22, 222, 223
PspPI	GGNCC	3 cut(s)	209, 221, 592
PspPPI	RGGWCCY	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	85
RsaI	GTAC	4 cut(s)	96, 158, 228, 353
RsaNI	GTAC	4 cut(s)	95, 157, 227, 352
SacII	CCGCGG	1 cut(s)	268
SalI	GTCGAC	1 cut(s)	197
SaqAI	TTAA	2 cut(s)	294, 625
SatI	GCNGC	6 cut(s)	19, 265, 379, 505, 517, 538
Sau3AI	GATC	3 cut(s)	85, 113, 371
Sau96I	GGNCC	3 cut(s)	209, 221, 592
SchI	GAGTC	1 cut(s)	596
SduI	GDGCHC	1 cut(s)	614
SfaNI	GCATC	1 cut(s)	163
Sfr303I	CCGCGG	1 cut(s)	268
SgrBI	CCGCGG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	221
SspMI	CTAG	1 cut(s)	471
StyI	CCWWGG	1 cut(s)	189
TaaI	ACNGT	4 cut(s)	25, 77, 151, 299
TaiI	ACGT	2 cut(s)	204, 316
TaqI	TCGA	3 cut(s)	153, 165, 198
TatI	WGTACW	2 cut(s)	94, 156
TauI	GCSGC	6 cut(s)	21, 267, 381, 507, 519, 540
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	2 cut(s)	294, 625
Tru9I	TTAA	2 cut(s)	294, 625
TscAI	CASTG	1 cut(s)	584
TseFI	GTSAC	1 cut(s)	202
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	49
TspGWI	ACGGA	4 cut(s)	369, 384, 405, 426
TspRI	CASTG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	50
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.