Rorug05G0507900

Armadillo/beta-catenin-like repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002304
Physical Location & Seq
Forward (+)
69097514 .. 69100620
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0507900.1

Sequence Viewer

Length: 825 bp
ATGAAAGGGAAAACAGTGATGTTTGTAGGTGATTCACTTGGGAGGAATCAATGGGAGTCTTTGGTTTGCTTGATATACTCTGCAGCTCCCCAAACCCAAACCCAAATGGTGAAAGGAGATCCACTCTCAACATTCAACTTCTTGGACTATGGTGTAACCCTGCAATACTACCGAGCTCCATATCTGGTGGACATTGATATGATGGAAGGAAAGAGAGTTCTGAGGCTTGAGGACATATCGGAGAACAGCAATGCGTGGCGTTCCGCCGATGTGCTGTCGTTTAACACCGGTCACTGGTGGAGTCACACAGGAGGTCTCCAAGGGTGGGATTACATGGAATCAGGAGGAAAATATTACAAAGATATGGATCGTTTGGCTGCTTTGGAGAAAGGAATGAGAACCTGGGCAAATTGGGTCGACAAAAACATCGATACCACAAGGACCCGAGTTTTCTTTCTCTCCATATCTCCCACACATTACAACCCAAATGAATGGAATGGGGGAGCAACACCTACAACCACCAAGAACTGCTATGGAGAAACATCACCGATGACAGTGAGTGGGATAACTTATCCGGGGACGACATATCCAGACCAGATGAGAGTGATGGACAGTGTGATCCGAGAAATGCGCAACCCTGCATTTCTGCTAGACATTACAATGCTTTCAGAGCTCAGAAAAGATGGGCACCCTTCAATCTACAGCGGGGATTTGAGTCCTGCACAGAGAGCGAATCCTCAACGTTCAGCTGATTGTAGCCATTGGTGCCTTCCTGGATTGCCAGACACTTGGAACCAACTGTTTTACACTACCTTGCTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

274

Amino Acids

31.23

Weight (kDa)

5.74

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PC-Esterase PF13839 1 - 270 2.1e-87 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 632
AccB1I GGYRCC 2 cut(s) 687, 765
AccI GTMKAC 1 cut(s) 417
AciI CCGC 2 cut(s) 264, 705
AclI AACGTT 1 cut(s) 742
AclWI GGATC 3 cut(s) 113, 375, 613
AfiI CCNNNNNNNGG 2 cut(s) 294, 325
AgeI ACCGGT 1 cut(s) 287
AgsI TTSAA 2 cut(s) 136, 696
AjnI CCWGG 2 cut(s) 401, 772
AloI GAACNNNNNNTCC 2 cut(s) 201, 233
AluBI AGCT 4 cut(s) 86, 176, 673, 749
AluI AGCT 4 cut(s) 86, 176, 673, 749
Alw21I GWGCWC 2 cut(s) 178, 675
Alw26I GTCTC 1 cut(s) 320
AlwI GGATC 3 cut(s) 113, 375, 613
Ama87I CYCGRG 1 cut(s) 444
ApeKI GCWGC 2 cut(s) 83, 377
AsiGI ACCGGT 1 cut(s) 287
AspLEI GCGC 1 cut(s) 633
AspS9I GGNCC 1 cut(s) 441
AsuC2I CCSGG 1 cut(s) 576
AsuHPI GGTGA 3 cut(s) 41, 121, 537
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 1 cut(s) 441
BaeGI GKGCMC 1 cut(s) 690
BanI GGYRCC 2 cut(s) 687, 765
BanII GRGCYC 2 cut(s) 178, 675
Bbv12I GWGCWC 2 cut(s) 178, 675
BbvI GCAGC 2 cut(s) 95, 364
BccI CCATC 3 cut(s) 196, 601, 677
BciT130I CCWGG 2 cut(s) 403, 774
BcnI CCSGG 1 cut(s) 576
BcoDI GTCTC 1 cut(s) 320
BfaI CTAG 1 cut(s) 650
BfmI CTRYAG 2 cut(s) 81, 700
BisI GCNGC 2 cut(s) 84, 378
BlsI GCNGC 2 cut(s) 85, 379
Bme1390I CCNGG 3 cut(s) 403, 576, 774
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 4 cut(s) 443, 689, 767, 794
BmrFI CCNGG 3 cut(s) 403, 576, 774
BplI GAGNNNNNCTC 2 cut(s) 108, 140
BpuEI CTTGAG 1 cut(s) 248
BpuMI CCSGG 1 cut(s) 576
Bsa29I ATCGAT 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 320
BsaJI CCNNGG 3 cut(s) 319, 402, 575
BsaWI WCCGGW 1 cut(s) 287
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 325
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 2 cut(s) 403, 774
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 3 cut(s) 319, 402, 575
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 2 cut(s) 294, 325
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 2 cut(s) 212, 688
BseNI ACTGG 1 cut(s) 299
BseSI GKGCMC 1 cut(s) 690
BseXI GCAGC 2 cut(s) 95, 364
BsgI GTGCAG 1 cut(s) 705
BshNI GGYRCC 2 cut(s) 687, 765
BshTI ACCGGT 1 cut(s) 287
BshVI ATCGAT 1 cut(s) 429
BsiHKAI GWGCWC 2 cut(s) 178, 675
BsiHKCI CYCGRG 1 cut(s) 444
BsiSI CCGG 2 cut(s) 288, 575
BslFI GGGAC 1 cut(s) 592
BslI CCNNNNNNNGG 2 cut(s) 294, 325
BsmAI GTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 592
Bso31I GGTCTC 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 444
Bsp1286I GDGCHC 3 cut(s) 178, 675, 690
Bsp143I GATC 3 cut(s) 118, 367, 618
BspACI CCGC 2 cut(s) 264, 705
BspCNI CTCAG 2 cut(s) 213, 687
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 4 cut(s) 443, 689, 767, 794
BspMAI CTGCAG 1 cut(s) 85
BspPI GGATC 3 cut(s) 113, 375, 613
BspT107I GGYRCC 2 cut(s) 687, 765
BspTNI GGTCTC 1 cut(s) 320
BsrDI GCAATG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 287
BssECI CCNNGG 3 cut(s) 319, 402, 575
BssMI GATC 3 cut(s) 118, 367, 618
BssT1I CCWWGG 1 cut(s) 319
Bst2UI CCWGG 2 cut(s) 403, 774
Bst4CI ACNGT 4 cut(s) 16, 556, 614, 801
BstDEI CTNAG 2 cut(s) 221, 674
BstHHI GCGC 1 cut(s) 633
BstKTI GATC 3 cut(s) 121, 370, 621
BstMAI GTCTC 1 cut(s) 320
BstMBI GATC 3 cut(s) 118, 367, 618
BstMWI GCNNNNNNNGC 3 cut(s) 670, 728, 765
BstNI CCWGG 2 cut(s) 403, 774
BstSCI CCNGG 3 cut(s) 401, 574, 772
BstSFI CTRYAG 2 cut(s) 81, 700
BstSLI GKGCMC 1 cut(s) 690
BstV1I GCAGC 2 cut(s) 95, 364
BstX2I RGATCY 1 cut(s) 118
BstXI CCANNNNNNTGG 2 cut(s) 492, 789
BstYI RGATCY 1 cut(s) 118
Bsu15I ATCGAT 1 cut(s) 429
BsuTUI ATCGAT 1 cut(s) 429
BtsIMutI CAGTG 4 cut(s) 21, 292, 561, 619
CfoI GCGC 1 cut(s) 633
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 441
ClaI ATCGAT 1 cut(s) 429
CspAI ACCGGT 1 cut(s) 287
CviAII CATG 1 cut(s) 334
CviJI RGCY 7 cut(s) 86, 176, 226, 377, 673, 749, 759
CviKI_1 RGCY 7 cut(s) 86, 176, 226, 377, 673, 749, 759
DdeI CTNAG 2 cut(s) 221, 674
DpnI GATC 3 cut(s) 120, 369, 620
DpnII GATC 3 cut(s) 118, 367, 618
EciI GGCGGA 1 cut(s) 253
Ecl136II GAGCTC 2 cut(s) 176, 673
Eco130I CCWWGG 1 cut(s) 319
Eco24I GRGCYC 2 cut(s) 178, 675
Eco31I GGTCTC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 441
Eco53kI GAGCTC 2 cut(s) 176, 673
Eco88I CYCGRG 1 cut(s) 444
EcoICRI GAGCTC 2 cut(s) 176, 673
EcoO109I RGGNCCY 1 cut(s) 441
EcoRII CCWGG 2 cut(s) 401, 772
EcoT14I CCWWGG 1 cut(s) 319
EcoT38I GRGCYC 2 cut(s) 178, 675
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 1 cut(s) 337
FaqI GGGAC 1 cut(s) 592
FatI CATG 1 cut(s) 333
FauI CCCGC 1 cut(s) 698
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 2 cut(s) 84, 378
FriOI GRGCYC 2 cut(s) 178, 675
Fsp4HI GCNGC 2 cut(s) 84, 378
FspBI CTAG 1 cut(s) 650
FspI TGCGCA 1 cut(s) 632
GlaI GCGC 1 cut(s) 632
GluI GCNGC 2 cut(s) 84, 378
HapII CCGG 2 cut(s) 288, 575
HhaI GCGC 1 cut(s) 633
Hin1II CATG 1 cut(s) 337
Hin6I GCGC 1 cut(s) 631
HinP1I GCGC 1 cut(s) 631
HincII GTYRAC 1 cut(s) 418
HindII GTYRAC 1 cut(s) 418
HinfI GANTC 7 cut(s) 32, 46, 56, 301, 338, 715, 733
HpaII CCGG 2 cut(s) 288, 575
HphI GGTGA 3 cut(s) 41, 121, 537
Hpy166II GTNNAC 2 cut(s) 190, 418
Hpy188I TCNGA 5 cut(s) 222, 241, 623, 670, 677
Hpy188III TCNNGA 2 cut(s) 342, 590
Hpy8I GTNNAC 2 cut(s) 190, 418
HpyAV CCTTC 3 cut(s) 200, 702, 779
HpyCH4III ACNGT 4 cut(s) 16, 556, 614, 801
HpyCH4IV ACGT 1 cut(s) 742
HpyCH4V TGCA 4 cut(s) 83, 163, 641, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 670, 728, 765
HpyF3I CTNAG 2 cut(s) 221, 674
HpySE526I ACGT 1 cut(s) 742
Hsp92II CATG 1 cut(s) 337
HspAI GCGC 1 cut(s) 631
Kzo9I GATC 3 cut(s) 118, 367, 618
LmnI GCTCC 3 cut(s) 91, 181, 503
Lsp1109I GCAGC 2 cut(s) 95, 364
MaeI CTAG 1 cut(s) 650
MaeII ACGT 1 cut(s) 742
MaeIII GTNAC 3 cut(s) 154, 290, 302
MalI GATC 3 cut(s) 120, 369, 620
MboI GATC 3 cut(s) 118, 367, 618
MboII GAAGA 1 cut(s) 811
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 3 cut(s) 178, 675, 690
MluCI AATT 1 cut(s) 409
MlyI GAGTC 3 cut(s) 65, 310, 724
MnlI CCTC 6 cut(s) 36, 216, 223, 305, 338, 747
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 197, 659
MspA1I CMGCKG 2 cut(s) 705, 749
MspI CCGG 2 cut(s) 288, 575
MspR9I CCNGG 3 cut(s) 403, 576, 774
MvaI CCWGG 2 cut(s) 403, 774
MwoI GCNNNNNNNGC 3 cut(s) 670, 728, 765
NciI CCSGG 1 cut(s) 576
NdeII GATC 3 cut(s) 118, 367, 618
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 4 cut(s) 443, 689, 767, 794
NmuCI GTSAC 2 cut(s) 290, 302
NsbI TGCGCA 1 cut(s) 632
PfeI GAWTC 4 cut(s) 32, 46, 338, 733
PfoI TCCNGGA 1 cut(s) 772
PinAI ACCGGT 1 cut(s) 287
PkrI GCNGC 2 cut(s) 85, 379
PleI GAGTC 3 cut(s) 64, 309, 723
PpsI GAGTC 3 cut(s) 64, 309, 723
PpuMI RGGWCCY 1 cut(s) 441
Psp124BI GAGCTC 2 cut(s) 178, 675
Psp1406I AACGTT 1 cut(s) 742
Psp5II RGGWCCY 1 cut(s) 441
Psp6I CCWGG 2 cut(s) 401, 772
PspGI CCWGG 2 cut(s) 401, 772
PspN4I GGNNCC 4 cut(s) 443, 689, 767, 794
PspPI GGNCC 1 cut(s) 441
PspPPI RGGWCCY 1 cut(s) 441
PstI CTGCAG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 749
RseI CAYNNNNRTG 2 cut(s) 197, 659
SacI GAGCTC 2 cut(s) 178, 675
SalI GTCGAC 1 cut(s) 416
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 84, 378
Sau3AI GATC 3 cut(s) 118, 367, 618
Sau96I GGNCC 1 cut(s) 441
SchI GAGTC 3 cut(s) 65, 310, 724
ScrFI CCNGG 3 cut(s) 403, 576, 774
SduI GDGCHC 3 cut(s) 178, 675, 690
SfcI CTRYAG 2 cut(s) 81, 700
SinI GGWCC 1 cut(s) 441
SmiMI CAYNNNNRTG 2 cut(s) 197, 659
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 409
SsiI CCGC 2 cut(s) 264, 705
SspI AATATT 1 cut(s) 353
SspMI CTAG 1 cut(s) 650
SstI GAGCTC 2 cut(s) 178, 675
StyD4I CCNGG 3 cut(s) 401, 574, 772
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 4 cut(s) 16, 556, 614, 801
TaiI ACGT 1 cut(s) 745
TaqI TCGA 2 cut(s) 417, 429
TasI AATT 1 cut(s) 409
TfiI GAWTC 4 cut(s) 32, 46, 338, 733
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 4 cut(s) 21, 299, 561, 619
TseFI GTSAC 2 cut(s) 290, 302
TseI GCWGC 2 cut(s) 83, 377
Tsp45I GTSAC 2 cut(s) 290, 302
TspDTI ATGAA 2 cut(s) 17, 504
TspRI CASTG 4 cut(s) 21, 299, 561, 619
VpaK11BI GGWCC 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 417
XspI CTAG 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.