Rh1DG030900

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0002304
Physical Location & Seq
Forward (+)
4596779 .. 4602766
5988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG030900.1

Sequence Viewer

Length: 1194 bp
ATGACCAACCCCTACCACCTCCACGCGCCGCTGCGCTCCGCCCCTCAATCCACCTCTCAAACCTTCACGGCGAAGCTCCTCCTCCTCCTCACTCTCCTCCCTCTCTCCCTCGCCGCCTTGGCTTTCATCCTCCAATGGCGCGGCGGCATCCCCGACCCCACCACTCGCTGGTCCCCTCCTGGATCCAACCACCTCTTCCCCGGCATGGAGGCCTCTCCTCTCTCCTCCGCCGTCGTCCGATCCTCCTCCTCCTCTGATTGCGTCAATCTCGGCCGCAGCAACTCCCCGTCGTTTCCTTACTATCAGAATTGGAAGTTTGATTCTGCCGCCGATTTGAAACCGAAGATTGTAATTACTACAAGTACGTCGGCAGGCTTAGATCAGATTTTACCATGGATGTTTTATCACAAGGTTATTGGAGTTTCCACCTTTTTTCTTTTTGTGGAAGGAAAAGCTGCGTCTCCTGAAGTATCCAAAGTTCTGGAGTCTATACCTGGAGTAAAATTGATATACAGAACAAAGGAGCTCGAGGAGCAACAAGCTAGAAGTCGGATTTGGAATGAGACATGGCTGTCAAGTTTCTTTTACAAACCATGCAATTATGAGCTATTTGTGAAGCAATCTCTCAATATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGCATTCATAATTGCTTCAACTGCAACTGAGGAGGAAATGCTCAAATGGTACCATGAACACATTGTATGGGATGACAAAGATATAAGAATAAAACTTTTGAGGAAAGGCATCTTGACTCGAATATATGCTCCAATGGCCATAATCCAAGGACTAAAGGAGTCGGGAGTCTTCAGCTCTGTTATTGCATCTGCCTCAACTACACTCTCAAAGGAAAAGTTCTTGGCAACAATTGATAGTAGTAACTCCTCTAGAGCTACTGCCTCTATATCCCACCCGTCGAGGAAGATTAGTAGAAGCAGTGAGAGTATGGCTACTGCCAGGAAGACCTTGGATGTTGAAGTTGCTGAATTCCAAGAACTGGCCGTTCCACCATTATCCCCTCCAGTAATGGATGATAACCAGCTCAGCTTTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

397

Amino Acids

44.23

Weight (kDa)

6.33

Isoelectric Point (pI)

52.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 571
Acc65I GGTACC 1 cut(s) 822
AccB1I GGYRCC 2 cut(s) 716, 822
AccB7I CCANNNNNTGG 2 cut(s) 168, 1132
AccII CGCG 2 cut(s) 26, 141
AciI CCGC 8 cut(s) 29, 39, 114, 141, 144, 228, 274, 327
AclWI GGATC 3 cut(s) 177, 190, 234
AcoI YGGCCR 3 cut(s) 271, 909, 1134
AcsI RAATTY 1 cut(s) 1121
AcuI CTGAAG 2 cut(s) 486, 928
AfaI GTAC 2 cut(s) 364, 824
AfiI CCNNNNNNNGG 3 cut(s) 168, 205, 1132
AgsI TTSAA 4 cut(s) 337, 792, 1112, 1187
AjnI CCWGG 4 cut(s) 178, 493, 757, 1091
AjuI GAANNNNNNNTTGG 4 cut(s) 179, 211, 538, 570
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 2 cut(s) 465, 557
AlwI GGATC 3 cut(s) 177, 190, 234
AlwNI CAGNNNCTG 1 cut(s) 745
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 4 cut(s) 210, 271, 909, 1134
ApeKI GCWGC 4 cut(s) 31, 276, 455, 745
ApoI RAATTY 1 cut(s) 1121
Asp718I GGTACC 1 cut(s) 822
AspLEI GCGC 3 cut(s) 28, 36, 141
AspS9I GGNCC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 201
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 171
BalI TGGCCA 1 cut(s) 911
BamHI GGATCC 1 cut(s) 182
BanI GGYRCC 2 cut(s) 716, 822
BanII GRGCYC 1 cut(s) 528
BbsI GAAGAC 2 cut(s) 934, 1103
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 4 cut(s) 18, 288, 442, 732
BccI CCATC 1 cut(s) 631
BceAI ACGGC 3 cut(s) 84, 215, 1121
BciT130I CCWGG 4 cut(s) 180, 495, 759, 1093
BciVI GTATCC 1 cut(s) 481
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 465, 557
BfaI CTAG 2 cut(s) 543, 1023
BfuI GTATCC 1 cut(s) 481
BglI GCCNNNNNGGC 1 cut(s) 119
BlpI GCTNAGC 1 cut(s) 1178
Bme1390I CCNGG 5 cut(s) 180, 201, 495, 759, 1093
Bme18I GGWCC 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 4 cut(s) 173, 184, 718, 824
BmrFI CCNGG 5 cut(s) 180, 201, 495, 759, 1093
BmsI GCATC 4 cut(s) 156, 649, 891, 968
BpiI GAAGAC 2 cut(s) 934, 1103
BpmI CTGGAG 3 cut(s) 503, 516, 1140
Bpu1102I GCTNAGC 1 cut(s) 1178
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 7 cut(s) 117, 199, 392, 720, 758, 919, 1101
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 205, 1132
Bse1I ACTGG 3 cut(s) 677, 1137, 1157
BseBI CCWGG 4 cut(s) 180, 495, 759, 1093
BseDI CCNNGG 7 cut(s) 117, 199, 392, 720, 758, 919, 1101
BseGI GGATG 7 cut(s) 126, 147, 402, 664, 850, 1111, 1171
BseLI CCNNNNNNNGG 3 cut(s) 168, 205, 1132
BseMII CTCAG 2 cut(s) 792, 1192
BseNI ACTGG 3 cut(s) 677, 1137, 1157
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 4 cut(s) 18, 288, 442, 732
BseYI CCCAGC 1 cut(s) 709
Bsh1236I CGCG 2 cut(s) 26, 141
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 4 cut(s) 212, 273, 911, 1136
BshNI GGYRCC 2 cut(s) 716, 822
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 528
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 3 cut(s) 168, 205, 1132
BsmAI GTCTC 2 cut(s) 465, 557
BsmBI CGTCTC 1 cut(s) 465
BsmFI GGGAC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 776
BsnI GGCC 4 cut(s) 212, 273, 911, 1136
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 3 cut(s) 182, 239, 379
Bsp1720I GCTNAGC 1 cut(s) 1178
Bsp19I CCATGG 1 cut(s) 392
BspACI CCGC 8 cut(s) 29, 39, 114, 141, 144, 228, 274, 327
BspANI GGCC 4 cut(s) 212, 273, 911, 1136
BspCNI CTCAG 2 cut(s) 793, 1191
BspFNI CGCG 2 cut(s) 26, 141
BspLI GGNNCC 4 cut(s) 173, 184, 718, 824
BspPI GGATC 3 cut(s) 177, 190, 234
BspT107I GGYRCC 2 cut(s) 716, 822
BsrI ACTGG 3 cut(s) 677, 1137, 1157
BssECI CCNNGG 7 cut(s) 117, 199, 392, 720, 758, 919, 1101
BssMI GATC 3 cut(s) 182, 239, 379
BssT1I CCWWGG 5 cut(s) 117, 392, 720, 919, 1101
Bst2UI CCWGG 4 cut(s) 180, 495, 759, 1093
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 2 cut(s) 659, 745
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 3 cut(s) 376, 801, 1178
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 7 cut(s) 126, 147, 402, 664, 850, 1111, 1171
BstFNI CGCG 2 cut(s) 26, 141
BstHHI GCGC 3 cut(s) 28, 36, 141
BstKTI GATC 3 cut(s) 185, 242, 382
BstMAI GTCTC 2 cut(s) 465, 557
BstMBI GATC 3 cut(s) 182, 239, 379
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 7 cut(s) 119, 532, 659, 745, 754, 794, 908
BstNI CCWGG 4 cut(s) 180, 495, 759, 1093
BstSCI CCNGG 5 cut(s) 178, 199, 493, 757, 1091
BstUI CGCG 2 cut(s) 26, 141
BstV1I GCAGC 4 cut(s) 18, 288, 442, 732
BstV2I GAAGAC 2 cut(s) 934, 1103
BstX2I RGATCY 1 cut(s) 182
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 1 cut(s) 182
BstZI CGGCCG 1 cut(s) 271
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 4 cut(s) 212, 273, 911, 1136
BtgI CCRYGG 1 cut(s) 392
BtsCI GGATG 7 cut(s) 126, 147, 402, 664, 850, 1111, 1171
BtsI GCAGTG 1 cut(s) 1078
BtsIMutI CAGTG 1 cut(s) 1078
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 745
CfoI GCGC 3 cut(s) 28, 36, 141
Cfr13I GGNCC 1 cut(s) 171
CseI GACGC 2 cut(s) 250, 447
Csp6I GTAC 2 cut(s) 363, 823
CviAII CATG 5 cut(s) 205, 393, 567, 594, 827
CviQI GTAC 2 cut(s) 363, 823
DdeI CTNAG 3 cut(s) 376, 801, 1178
DpnI GATC 3 cut(s) 184, 241, 381
DpnII GATC 3 cut(s) 182, 239, 379
DrdI GACNNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 571
EaeI YGGCCR 3 cut(s) 271, 909, 1134
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 2 cut(s) 28, 217
Ecl136II GAGCTC 1 cut(s) 526
EclXI CGGCCG 1 cut(s) 271
Eco130I CCWWGG 5 cut(s) 117, 392, 720, 919, 1101
Eco147I AGGCCT 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 171
Eco52I CGGCCG 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 526
Eco57I CTGAAG 2 cut(s) 486, 928
Eco88I CYCGRG 1 cut(s) 527
EcoICRI GAGCTC 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 1121
EcoRII CCWGG 4 cut(s) 178, 493, 757, 1091
EcoT14I CCWWGG 5 cut(s) 117, 392, 720, 919, 1101
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 5 cut(s) 117, 392, 720, 919, 1101
Esp3I CGTCTC 1 cut(s) 465
FaeI CATG 5 cut(s) 208, 396, 570, 597, 830
FaqI GGGAC 1 cut(s) 157
FatI CATG 5 cut(s) 204, 392, 566, 593, 826
FokI GGATG 7 cut(s) 113, 134, 409, 671, 857, 1118, 1178
FriOI GRGCYC 1 cut(s) 528
FspBI CTAG 2 cut(s) 543, 1023
GlaI GCGC 3 cut(s) 27, 35, 140
GsaI CCCAGC 1 cut(s) 713
GsuI CTGGAG 3 cut(s) 503, 516, 1140
HaeIII GGCC 4 cut(s) 212, 273, 911, 1136
HapII CCGG 1 cut(s) 201
HgaI GACGC 2 cut(s) 250, 447
HhaI GCGC 3 cut(s) 28, 36, 141
Hin1II CATG 5 cut(s) 208, 396, 570, 597, 830
Hin6I GCGC 3 cut(s) 26, 34, 139
HinP1I GCGC 3 cut(s) 26, 34, 139
HinfI GANTC 5 cut(s) 320, 485, 889, 932, 939
HpaII CCGG 1 cut(s) 201
Hpy188I TCNGA 5 cut(s) 239, 256, 306, 384, 552
Hpy188III TCNNGA 6 cut(s) 464, 482, 686, 886, 936, 1023
Hpy99I CGWCG 4 cut(s) 236, 292, 370, 1054
HpyAV CCTTC 2 cut(s) 73, 440
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 3 cut(s) 597, 797, 959
HpyF10VI GCNNNNNNNGC 7 cut(s) 119, 532, 659, 745, 754, 794, 908
HpyF3I CTNAG 3 cut(s) 376, 801, 1178
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 5 cut(s) 208, 396, 570, 597, 830
HspAI GCGC 3 cut(s) 26, 34, 139
KpnI GGTACC 1 cut(s) 826
Kzo9I GATC 3 cut(s) 182, 239, 379
LmnI GCTCC 5 cut(s) 41, 81, 523, 532, 907
Lsp1109I GCAGC 4 cut(s) 18, 288, 442, 732
LweI GCATC 4 cut(s) 156, 649, 891, 968
MaeI CTAG 2 cut(s) 543, 1023
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 2 cut(s) 699, 1013
MalI GATC 3 cut(s) 184, 241, 381
MboI GATC 3 cut(s) 182, 239, 379
MboII GAAGA 5 cut(s) 187, 355, 934, 1069, 1108
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 1 cut(s) 528
MlsI TGGCCA 1 cut(s) 911
MluCI AATT 7 cut(s) 307, 351, 503, 598, 783, 1002, 1121
MluNI TGGCCA 1 cut(s) 911
MlyI GAGTC 4 cut(s) 494, 883, 941, 948
MmeI TCCRAC 2 cut(s) 210, 530
Mox20I TGGCCA 1 cut(s) 911
MscI TGGCCA 1 cut(s) 911
Msp20I TGGCCA 1 cut(s) 911
MspA1I CMGCKG 2 cut(s) 31, 713
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 5 cut(s) 180, 201, 495, 759, 1093
MunI CAATTG 1 cut(s) 1002
Mva1269I GAATGC 1 cut(s) 776
MvaI CCWGG 4 cut(s) 180, 495, 759, 1093
MvnI CGCG 2 cut(s) 26, 141
MwoI GCNNNNNNNGC 7 cut(s) 119, 532, 659, 745, 754, 794, 908
NciI CCSGG 1 cut(s) 201
NcoI CCATGG 1 cut(s) 392
NdeII GATC 3 cut(s) 182, 239, 379
NlaIII CATG 5 cut(s) 208, 396, 570, 597, 830
NlaIV GGNNCC 4 cut(s) 173, 184, 718, 824
NmeAIII GCCGAG 1 cut(s) 249
PaeR7I CTCGAG 1 cut(s) 527
PceI AGGCCT 1 cut(s) 212
PctI GAATGC 1 cut(s) 776
PfeI GAWTC 1 cut(s) 320
PflMI CCANNNNNTGG 2 cut(s) 168, 1132
PfoI TCCNGGA 1 cut(s) 178
PleI GAGTC 4 cut(s) 493, 883, 940, 947
PpsI GAGTC 4 cut(s) 493, 883, 940, 947
Psp124BI GAGCTC 1 cut(s) 528
Psp6I CCWGG 4 cut(s) 178, 493, 757, 1091
PspFI CCCAGC 1 cut(s) 709
PspGI CCWGG 4 cut(s) 178, 493, 757, 1091
PspN4I GGNNCC 4 cut(s) 173, 184, 718, 824
PspPI GGNCC 1 cut(s) 171
PspXI VCTCGAGB 1 cut(s) 527
PsrI GAACNNNNNNTAC 2 cut(s) 462, 494
PstNI CAGNNNCTG 1 cut(s) 745
PsuI RGATCY 1 cut(s) 182
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 2 cut(s) 364, 824
RsaNI GTAC 2 cut(s) 363, 823
SacI GAGCTC 1 cut(s) 528
Sau3AI GATC 3 cut(s) 182, 239, 379
Sau96I GGNCC 1 cut(s) 171
SchI GAGTC 4 cut(s) 494, 883, 941, 948
ScrFI CCNGG 5 cut(s) 180, 201, 495, 759, 1093
SduI GDGCHC 1 cut(s) 528
SfaNI GCATC 4 cut(s) 156, 649, 891, 968
Sfr274I CTCGAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 7 cut(s) 307, 351, 503, 598, 783, 1002, 1121
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 8 cut(s) 29, 39, 114, 141, 144, 228, 274, 327
SspMI CTAG 2 cut(s) 543, 1023
SstI GAGCTC 1 cut(s) 528
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 5 cut(s) 178, 199, 493, 757, 1091
StyI CCWWGG 5 cut(s) 117, 392, 720, 919, 1101
TaiI ACGT 1 cut(s) 368
TaqI TCGA 3 cut(s) 528, 892, 1052
TasI AATT 7 cut(s) 307, 351, 503, 598, 783, 1002, 1121
TauI GCSGC 6 cut(s) 31, 116, 144, 147, 276, 329
TfiI GAWTC 1 cut(s) 320
TscAI CASTG 1 cut(s) 1078
TseI GCWGC 4 cut(s) 31, 276, 455, 745
TspDTI ATGAA 4 cut(s) 115, 671, 769, 843
TspRI CASTG 1 cut(s) 1078
Van91I CCANNNNNTGG 2 cut(s) 168, 1132
VpaK11BI GGWCC 1 cut(s) 171
XapI RAATTY 1 cut(s) 1121
XbaI TCTAGA 1 cut(s) 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 1099
XhoI CTCGAG 1 cut(s) 527
XspI CTAG 2 cut(s) 543, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.