Rh1CG038900

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0002304
Physical Location & Seq
Reverse (-)
7476448 .. 7479134
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG038900.1

Sequence Viewer

Length: 873 bp
ATGACCAACCCCTACCACCTCCACGCGCCGCTGCGCTCCGCCCCTCAATCCACCTCTCAAACCTTCACGGCGAAGCTCCTCCTCCTCCTCACTCTCCTCCCTCTCTCCCTCGCCGCCTTGGCTTTCATCCTCCAATGGCGCGGCGGCATCCCCGACCCCACCACTCGCTGGTCCCCTCCTGGATCCAACCACCTCTTCCCCGGCATGGAGGCCTCTCCTCTCTCCTCCGCCGTCGTCCGATCCTCCTCCTCCTCTGATTGCGTCAATCTCGGCCGCAGCAACTCCCCGTCGTTTCCTTACTATCAGAATTGGAAGTTTGATTCTGCCGCCGATTTGAAACCGAAGATTGTAATTACTACAAGTACGTCGGCAGGCTTAGATCAGATTTTACCATGGATGTTTTATCACAAGGTTATTGGAGTTTCCACCTTTTTTCTTTTTGTGGAAGGAAAAGCTGCGTCTCCTGAAGTATCCAAAGTTCTGGAGTCTATACCTGGAGTAAAATTGATATACAGAACAAAGGAGCTCGAGGAGCAACAAGCTAGAAGTCGGATTTGGAATGAGACATGGCTGTCAAGTTTCTTTTACAAACCATGCAATTATGAGCTATTTGTGAAGCAATCTCTCAATATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGTTATTTTTTCGAACTATGTAAGTGAACTATGGTTATTTTGCTTGATCTTTGGATCCTCTAATACAAACCTTGATAAAAAAAAAAAAAAAAAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

290

Amino Acids

32.63

Weight (kDa)

8.84

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 571
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 168
AccII CGCG 2 cut(s) 26, 141
AciI CCGC 8 cut(s) 29, 39, 114, 141, 144, 228, 274, 327
AclWI GGATC 5 cut(s) 177, 190, 234, 822, 835
AcoI YGGCCR 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 2 cut(s) 168, 205
AgsI TTSAA 1 cut(s) 337
AjnI CCWGG 3 cut(s) 178, 493, 757
AjuI GAANNNNNNNTTGG 4 cut(s) 179, 211, 538, 570
AluBI AGCT 6 cut(s) 76, 455, 526, 542, 607, 713
AluI AGCT 6 cut(s) 76, 455, 526, 542, 607, 713
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 2 cut(s) 465, 557
AlwI GGATC 5 cut(s) 177, 190, 234, 822, 835
AlwNI CAGNNNCTG 1 cut(s) 745
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 2 cut(s) 210, 271
ApeKI GCWGC 4 cut(s) 31, 276, 455, 745
AspLEI GCGC 3 cut(s) 28, 36, 141
AspS9I GGNCC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 201
AsuII TTCGAA 1 cut(s) 785
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 171
BamHI GGATCC 2 cut(s) 182, 827
BanI GGYRCC 1 cut(s) 716
BanII GRGCYC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 4 cut(s) 18, 288, 442, 732
BccI CCATC 1 cut(s) 631
BceAI ACGGC 2 cut(s) 84, 215
BciT130I CCWGG 3 cut(s) 180, 495, 759
BciVI GTATCC 1 cut(s) 481
BcnI CCSGG 1 cut(s) 201
BcoDI GTCTC 2 cut(s) 465, 557
BfaI CTAG 1 cut(s) 543
BfuI GTATCC 1 cut(s) 481
BglI GCCNNNNNGGC 1 cut(s) 119
Bme1390I CCNGG 4 cut(s) 180, 201, 495, 759
Bme18I GGWCC 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 4 cut(s) 173, 184, 718, 829
BmrFI CCNGG 4 cut(s) 180, 201, 495, 759
BmsI GCATC 2 cut(s) 156, 649
BpmI CTGGAG 2 cut(s) 503, 516
Bpu14I TTCGAA 1 cut(s) 785
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 5 cut(s) 117, 199, 392, 720, 758
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 205
Bse1I ACTGG 1 cut(s) 677
BseBI CCWGG 3 cut(s) 180, 495, 759
BseDI CCNNGG 5 cut(s) 117, 199, 392, 720, 758
BseGI GGATG 4 cut(s) 126, 147, 402, 664
BseLI CCNNNNNNNGG 2 cut(s) 168, 205
BseNI ACTGG 1 cut(s) 677
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 4 cut(s) 18, 288, 442, 732
BseYI CCCAGC 1 cut(s) 709
Bsh1236I CGCG 2 cut(s) 26, 141
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 2 cut(s) 212, 273
BshNI GGYRCC 1 cut(s) 716
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 528
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 168, 205
BsmAI GTCTC 2 cut(s) 465, 557
BsmBI CGTCTC 1 cut(s) 465
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 2 cut(s) 212, 273
BsoBI CYCGRG 1 cut(s) 527
Bsp119I TTCGAA 1 cut(s) 785
Bsp1286I GDGCHC 1 cut(s) 528
Bsp143I GATC 5 cut(s) 182, 239, 379, 819, 827
Bsp19I CCATGG 1 cut(s) 392
BspACI CCGC 8 cut(s) 29, 39, 114, 141, 144, 228, 274, 327
BspANI GGCC 2 cut(s) 212, 273
BspFNI CGCG 2 cut(s) 26, 141
BspLI GGNNCC 4 cut(s) 173, 184, 718, 829
BspPI GGATC 5 cut(s) 177, 190, 234, 822, 835
BspT104I TTCGAA 1 cut(s) 785
BspT107I GGYRCC 1 cut(s) 716
BsrI ACTGG 1 cut(s) 677
BssECI CCNNGG 5 cut(s) 117, 199, 392, 720, 758
BssMI GATC 5 cut(s) 182, 239, 379, 819, 827
BssT1I CCWWGG 3 cut(s) 117, 392, 720
Bst2UI CCWGG 3 cut(s) 180, 495, 759
Bst6I CTCTTC 1 cut(s) 200
BstAPI GCANNNNNTGC 2 cut(s) 659, 745
BstBI TTCGAA 1 cut(s) 785
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 376
BstDSI CCRYGG 1 cut(s) 392
BstF5I GGATG 4 cut(s) 126, 147, 402, 664
BstFNI CGCG 2 cut(s) 26, 141
BstHHI GCGC 3 cut(s) 28, 36, 141
BstKTI GATC 5 cut(s) 185, 242, 382, 822, 830
BstMAI GTCTC 2 cut(s) 465, 557
BstMBI GATC 5 cut(s) 182, 239, 379, 819, 827
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 5 cut(s) 119, 532, 659, 745, 754
BstNI CCWGG 3 cut(s) 180, 495, 759
BstSCI CCNGG 4 cut(s) 178, 199, 493, 757
BstUI CGCG 2 cut(s) 26, 141
BstV1I GCAGC 4 cut(s) 18, 288, 442, 732
BstX2I RGATCY 2 cut(s) 182, 827
BstXI CCANNNNNNTGG 1 cut(s) 481
BstYI RGATCY 2 cut(s) 182, 827
BstZI CGGCCG 1 cut(s) 271
BsuI GTATCC 1 cut(s) 481
BsuRI GGCC 2 cut(s) 212, 273
BtgI CCRYGG 1 cut(s) 392
BtsCI GGATG 4 cut(s) 126, 147, 402, 664
Cac8I GCNNGC 1 cut(s) 373
CaiI CAGNNNCTG 1 cut(s) 745
CfoI GCGC 3 cut(s) 28, 36, 141
Cfr13I GGNCC 1 cut(s) 171
CseI GACGC 2 cut(s) 250, 447
Csp6I GTAC 1 cut(s) 363
CviAII CATG 4 cut(s) 205, 393, 567, 594
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 1 cut(s) 376
DpnI GATC 5 cut(s) 184, 241, 381, 821, 829
DpnII GATC 5 cut(s) 182, 239, 379, 819, 827
DrdI GACNNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 571
EaeI YGGCCR 1 cut(s) 271
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 2 cut(s) 28, 217
Ecl136II GAGCTC 1 cut(s) 526
EclXI CGGCCG 1 cut(s) 271
Eco130I CCWWGG 3 cut(s) 117, 392, 720
Eco147I AGGCCT 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 171
Eco52I CGGCCG 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 526
Eco57I CTGAAG 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 527
EcoICRI GAGCTC 1 cut(s) 526
EcoRII CCWGG 3 cut(s) 178, 493, 757
EcoT14I CCWWGG 3 cut(s) 117, 392, 720
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 3 cut(s) 117, 392, 720
Esp3I CGTCTC 1 cut(s) 465
FaeI CATG 4 cut(s) 208, 396, 570, 597
FaqI GGGAC 1 cut(s) 157
FatI CATG 4 cut(s) 204, 392, 566, 593
FokI GGATG 4 cut(s) 113, 134, 409, 671
FriOI GRGCYC 1 cut(s) 528
FspBI CTAG 1 cut(s) 543
GlaI GCGC 3 cut(s) 27, 35, 140
GsaI CCCAGC 1 cut(s) 713
GsuI CTGGAG 2 cut(s) 503, 516
HaeIII GGCC 2 cut(s) 212, 273
HapII CCGG 1 cut(s) 201
HgaI GACGC 2 cut(s) 250, 447
HhaI GCGC 3 cut(s) 28, 36, 141
Hin1II CATG 4 cut(s) 208, 396, 570, 597
Hin6I GCGC 3 cut(s) 26, 34, 139
HinP1I GCGC 3 cut(s) 26, 34, 139
HinfI GANTC 2 cut(s) 320, 485
HpaII CCGG 1 cut(s) 201
Hpy166II GTNNAC 1 cut(s) 800
Hpy188I TCNGA 5 cut(s) 239, 256, 306, 384, 552
Hpy188III TCNNGA 3 cut(s) 464, 482, 686
Hpy8I GTNNAC 1 cut(s) 800
Hpy99I CGWCG 3 cut(s) 236, 292, 370
HpyAV CCTTC 2 cut(s) 73, 440
HpyCH4IV ACGT 1 cut(s) 365
HpyCH4V TGCA 1 cut(s) 597
HpyF10VI GCNNNNNNNGC 5 cut(s) 119, 532, 659, 745, 754
HpyF3I CTNAG 1 cut(s) 376
HpySE526I ACGT 1 cut(s) 365
Hsp92II CATG 4 cut(s) 208, 396, 570, 597
HspAI GCGC 3 cut(s) 26, 34, 139
Kzo9I GATC 5 cut(s) 182, 239, 379, 819, 827
LmnI GCTCC 4 cut(s) 41, 81, 523, 532
Lsp1109I GCAGC 4 cut(s) 18, 288, 442, 732
LweI GCATC 2 cut(s) 156, 649
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 365
MaeIII GTNAC 1 cut(s) 699
MalI GATC 5 cut(s) 184, 241, 381, 821, 829
MboI GATC 5 cut(s) 182, 239, 379, 819, 827
MboII GAAGA 2 cut(s) 187, 355
MflI RGATCY 2 cut(s) 182, 827
MhlI GDGCHC 1 cut(s) 528
MluCI AATT 4 cut(s) 307, 351, 503, 598
MlyI GAGTC 1 cut(s) 494
MmeI TCCRAC 2 cut(s) 210, 530
MspA1I CMGCKG 2 cut(s) 31, 713
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 4 cut(s) 180, 201, 495, 759
MvaI CCWGG 3 cut(s) 180, 495, 759
MvnI CGCG 2 cut(s) 26, 141
MwoI GCNNNNNNNGC 5 cut(s) 119, 532, 659, 745, 754
NciI CCSGG 1 cut(s) 201
NcoI CCATGG 1 cut(s) 392
NdeII GATC 5 cut(s) 182, 239, 379, 819, 827
NlaIII CATG 4 cut(s) 208, 396, 570, 597
NlaIV GGNNCC 4 cut(s) 173, 184, 718, 829
NmeAIII GCCGAG 1 cut(s) 249
NspV TTCGAA 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 527
PceI AGGCCT 1 cut(s) 212
PfeI GAWTC 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 178
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp124BI GAGCTC 1 cut(s) 528
Psp6I CCWGG 3 cut(s) 178, 493, 757
PspFI CCCAGC 1 cut(s) 709
PspGI CCWGG 3 cut(s) 178, 493, 757
PspN4I GGNNCC 4 cut(s) 173, 184, 718, 829
PspPI GGNCC 1 cut(s) 171
PspXI VCTCGAGB 1 cut(s) 527
PsrI GAACNNNNNNTAC 2 cut(s) 462, 494
PstNI CAGNNNCTG 1 cut(s) 745
PsuI RGATCY 2 cut(s) 182, 827
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SacI GAGCTC 1 cut(s) 528
Sau3AI GATC 5 cut(s) 182, 239, 379, 819, 827
Sau96I GGNCC 1 cut(s) 171
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 4 cut(s) 180, 201, 495, 759
SduI GDGCHC 1 cut(s) 528
SfaNI GCATC 2 cut(s) 156, 649
Sfr274I CTCGAG 1 cut(s) 527
SfuI TTCGAA 1 cut(s) 785
SinI GGWCC 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 4 cut(s) 307, 351, 503, 598
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 8 cut(s) 29, 39, 114, 141, 144, 228, 274, 327
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 1 cut(s) 528
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 4 cut(s) 178, 199, 493, 757
StyI CCWWGG 3 cut(s) 117, 392, 720
TaiI ACGT 1 cut(s) 368
TaqI TCGA 2 cut(s) 528, 785
TasI AATT 4 cut(s) 307, 351, 503, 598
TauI GCSGC 6 cut(s) 31, 116, 144, 147, 276, 329
TfiI GAWTC 1 cut(s) 320
TseI GCWGC 4 cut(s) 31, 276, 455, 745
TspDTI ATGAA 2 cut(s) 115, 671
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 171
XhoI CTCGAG 1 cut(s) 527
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.