Rh1BG036600

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0002304
Physical Location & Seq
Reverse (-)
4864282 .. 4867893
3612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG036600.1

Sequence Viewer

Length: 465 bp
ATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGTTATTTTTTCGAACTATGTAAGTGAATTTGTAGCGGCCATAATCCAAGGACTAAAGGAGTCGGGAGTCTTCAGCTCTGTTATTGCATCTGCCTCAACTACACTCTCAAAGGAAAAGTTCTTGGCAACAATTGATAGTAGTAACTCCTCTAGAGCTACTGCCTCTATATCCCACCCGTCGAGGAAGATTAGTAGAAGCAGTGAGAGTATGGCTACTGCCAGGAAGACCTTGGATGTTGAAGTTGCTGAATTCCAAGAACTGGCCGTTCCACCATTATCCCCTCCAGTAATGGATGATAACCAGCTCAGCTTTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

154

Amino Acids

16.72

Weight (kDa)

4.67

Isoelectric Point (pI)

40.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 403
AciI CCGC 1 cut(s) 179
AcoI YGGCCR 2 cut(s) 180, 405
AcsI RAATTY 2 cut(s) 170, 392
AcuI CTGAAG 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 403
AgsI TTSAA 2 cut(s) 383, 458
AjnI CCWGG 2 cut(s) 127, 362
AluBI AGCT 5 cut(s) 83, 219, 299, 448, 453
AluI AGCT 5 cut(s) 83, 219, 299, 448, 453
AlwNI CAGNNNCTG 1 cut(s) 115
AoxI GGCC 2 cut(s) 180, 405
ApeKI GCWGC 1 cut(s) 115
ApoI RAATTY 2 cut(s) 170, 392
AsuII TTCGAA 1 cut(s) 155
BanI GGYRCC 1 cut(s) 86
BbsI GAAGAC 2 cut(s) 205, 374
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 392
BciT130I CCWGG 2 cut(s) 129, 364
BfaI CTAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 116, 180
BlpI GCTNAGC 1 cut(s) 449
BlsI GCNGC 2 cut(s) 117, 181
Bme1390I CCNGG 2 cut(s) 129, 364
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 129, 364
BmsI GCATC 2 cut(s) 19, 239
BpiI GAAGAC 2 cut(s) 205, 374
BpmI CTGGAG 1 cut(s) 411
Bpu1102I GCTNAGC 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 155
BsaJI CCNNGG 4 cut(s) 90, 128, 190, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 403
Bse1I ACTGG 3 cut(s) 47, 408, 428
BseBI CCWGG 2 cut(s) 129, 364
BseDI CCNNGG 4 cut(s) 90, 128, 190, 372
BseGI GGATG 3 cut(s) 34, 382, 442
BseLI CCNNNNNNNGG 1 cut(s) 403
BseMII CTCAG 1 cut(s) 463
BseNI ACTGG 3 cut(s) 47, 408, 428
BseRI GAGGAG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 1 cut(s) 79
BshFI GGCC 2 cut(s) 182, 407
BshNI GGYRCC 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 403
BsnI GGCC 2 cut(s) 182, 407
Bsp119I TTCGAA 1 cut(s) 155
Bsp1720I GCTNAGC 1 cut(s) 449
BspACI CCGC 1 cut(s) 179
BspANI GGCC 2 cut(s) 182, 407
BspCNI CTCAG 1 cut(s) 462
BspLI GGNNCC 1 cut(s) 88
BspT104I TTCGAA 1 cut(s) 155
BspT107I GGYRCC 1 cut(s) 86
BsrI ACTGG 3 cut(s) 47, 408, 428
BssECI CCNNGG 4 cut(s) 90, 128, 190, 372
BssT1I CCWWGG 3 cut(s) 90, 190, 372
Bst2UI CCWGG 2 cut(s) 129, 364
BstAPI GCANNNNNTGC 2 cut(s) 29, 115
BstBI TTCGAA 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 449
BstF5I GGATG 3 cut(s) 34, 382, 442
BstMWI GCNNNNNNNGC 3 cut(s) 29, 115, 124
BstNI CCWGG 2 cut(s) 129, 364
BstSCI CCNGG 2 cut(s) 127, 362
BstV1I GCAGC 1 cut(s) 102
BstV2I GAAGAC 2 cut(s) 205, 374
BsuRI GGCC 2 cut(s) 182, 407
BtsCI GGATG 3 cut(s) 34, 382, 442
BtsI GCAGTG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 349
CaiI CAGNNNCTG 1 cut(s) 115
CviJI RGCY 9 cut(s) 11, 83, 182, 219, 299, 356, 407, 448, 453
CviKI_1 RGCY 9 cut(s) 11, 83, 182, 219, 299, 356, 407, 448, 453
DdeI CTNAG 1 cut(s) 449
EaeI YGGCCR 2 cut(s) 180, 405
Eco130I CCWWGG 3 cut(s) 90, 190, 372
Eco57I CTGAAG 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 2 cut(s) 127, 362
EcoT14I CCWWGG 3 cut(s) 90, 190, 372
ErhI CCWWGG 3 cut(s) 90, 190, 372
FaiI YATR 6 cut(s) 20, 143, 162, 185, 311, 353
Fnu4HI GCNGC 2 cut(s) 116, 180
FokI GGATG 3 cut(s) 41, 389, 449
Fsp4HI GCNGC 2 cut(s) 116, 180
FspBI CTAG 1 cut(s) 294
GluI GCNGC 2 cut(s) 116, 180
GsaI CCCAGC 1 cut(s) 83
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 2 cut(s) 182, 407
HinfI GANTC 2 cut(s) 203, 210
Hpy188III TCNNGA 3 cut(s) 56, 207, 294
Hpy99I CGWCG 1 cut(s) 325
HpyCH4V TGCA 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 115, 124
HpyF3I CTNAG 1 cut(s) 449
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 2 cut(s) 19, 239
MaeI CTAG 1 cut(s) 294
MaeIII GTNAC 2 cut(s) 69, 284
MboII GAAGA 3 cut(s) 205, 340, 379
MfeI CAATTG 1 cut(s) 273
MluCI AATT 3 cut(s) 170, 273, 392
MlyI GAGTC 2 cut(s) 212, 219
MnlI CCTC 6 cut(s) 99, 247, 301, 316, 318, 435
MspA1I CMGCKG 1 cut(s) 83
MspR9I CCNGG 2 cut(s) 129, 364
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 2 cut(s) 129, 364
MwoI GCNNNNNNNGC 3 cut(s) 29, 115, 124
NlaIV GGNNCC 1 cut(s) 88
NspV TTCGAA 1 cut(s) 155
PflMI CCANNNNNTGG 1 cut(s) 403
PkrI GCNGC 2 cut(s) 117, 181
PleI GAGTC 2 cut(s) 211, 218
PpsI GAGTC 2 cut(s) 211, 218
Psp6I CCWGG 2 cut(s) 127, 362
PspFI CCCAGC 1 cut(s) 79
PspGI CCWGG 2 cut(s) 127, 362
PspN4I GGNNCC 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 115
PvuII CAGCTG 1 cut(s) 83
SatI GCNGC 2 cut(s) 116, 180
SchI GAGTC 2 cut(s) 212, 219
ScrFI CCNGG 2 cut(s) 129, 364
SetI ASST 6 cut(s) 85, 221, 301, 374, 450, 455
SfaNI GCATC 2 cut(s) 19, 239
SfuI TTCGAA 1 cut(s) 155
Sse9I AATT 3 cut(s) 170, 273, 392
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 127, 362
StyI CCWWGG 3 cut(s) 90, 190, 372
TaqI TCGA 2 cut(s) 155, 323
TasI AATT 3 cut(s) 170, 273, 392
TauI GCSGC 1 cut(s) 182
TscAI CASTG 1 cut(s) 349
TseI GCWGC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 1 cut(s) 349
Van91I CCANNNNNTGG 1 cut(s) 403
XapI RAATTY 2 cut(s) 170, 392
XbaI TCTAGA 1 cut(s) 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 370
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.