Rmu_co8159340.1_g000001

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8159340.1
OG0002304
Physical Location & Seq
Reverse (-)
2 .. 253
252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8159340.1_g000001.1.cds

Sequence Viewer

Length: 252 bp
atgaccaacccctaccacctccacgcgccgctgcgctccgcccctcaatcctcctctcaaaccttcacggcgaagctcctcctcctcctcaccctcctccctctctctctcgccgccttggctttcatcctccaatggcgcggcggcatccccgaccccaccacgcgctggtcccctcctggatccaaccacctcttccccggcatggaggcctctcctctctcctccgccgtcgtccgatcctcctcctcc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

84

Amino Acids

8.99

Weight (kDa)

10.83

Isoelectric Point (pI)

78.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 168
AccII CGCG 3 cut(s) 26, 141, 166
AciI CCGC 6 cut(s) 29, 39, 114, 141, 144, 228
AclWI GGATC 3 cut(s) 177, 190, 234
AfiI CCNNNNNNNGG 2 cut(s) 168, 205
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
AlwI GGATC 3 cut(s) 177, 190, 234
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 31
AspLEI GCGC 4 cut(s) 28, 36, 141, 168
AspS9I GGNCC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 82
AvaII GGWCC 1 cut(s) 171
BamHI GGATCC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 18
BceAI ACGGC 2 cut(s) 84, 215
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 201
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 5 cut(s) 29, 32, 114, 142, 145
BlsI GCNGC 5 cut(s) 30, 33, 115, 143, 146
Bme1390I CCNGG 2 cut(s) 180, 201
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 173, 184
BmrFI CCNGG 2 cut(s) 180, 201
BmsI GCATC 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 117, 199
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 205
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 117, 199
BseGI GGATG 2 cut(s) 126, 147
BseLI CCNNNNNNNGG 2 cut(s) 168, 205
BseXI GCAGC 1 cut(s) 18
Bsh1236I CGCG 3 cut(s) 26, 141, 166
BshFI GGCC 1 cut(s) 212
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 168, 205
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 1 cut(s) 212
Bsp143I GATC 2 cut(s) 182, 239
BspACI CCGC 6 cut(s) 29, 39, 114, 141, 144, 228
BspANI GGCC 1 cut(s) 212
BspFNI CGCG 3 cut(s) 26, 141, 166
BspLI GGNNCC 2 cut(s) 173, 184
BspPI GGATC 3 cut(s) 177, 190, 234
BssECI CCNNGG 2 cut(s) 117, 199
BssMI GATC 2 cut(s) 182, 239
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 200
BstF5I GGATG 2 cut(s) 126, 147
BstFNI CGCG 3 cut(s) 26, 141, 166
BstHHI GCGC 4 cut(s) 28, 36, 141, 168
BstKTI GATC 2 cut(s) 185, 242
BstMBI GATC 2 cut(s) 182, 239
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 178, 199
BstUI CGCG 3 cut(s) 26, 141, 166
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 126, 147
CfoI GCGC 4 cut(s) 28, 36, 141, 168
Cfr13I GGNCC 1 cut(s) 171
CviAII CATG 1 cut(s) 205
CviJI RGCY 3 cut(s) 76, 122, 212
CviKI_1 RGCY 3 cut(s) 76, 122, 212
DpnI GATC 2 cut(s) 184, 241
DpnII GATC 2 cut(s) 182, 239
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 2 cut(s) 28, 217
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FaqI GGGAC 1 cut(s) 157
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 5 cut(s) 29, 32, 114, 142, 145
FokI GGATG 2 cut(s) 113, 134
Fsp4HI GCNGC 5 cut(s) 29, 32, 114, 142, 145
GlaI GCGC 4 cut(s) 27, 35, 140, 167
GluI GCNGC 5 cut(s) 29, 32, 114, 142, 145
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 201
HhaI GCGC 4 cut(s) 28, 36, 141, 168
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 4 cut(s) 26, 34, 139, 166
HinP1I GCGC 4 cut(s) 26, 34, 139, 166
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 239
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 4 cut(s) 26, 34, 139, 166
Kzo9I GATC 2 cut(s) 182, 239
LmnI GCTCC 2 cut(s) 41, 81
LpnPI CCDG 4 cut(s) 154, 165, 192, 214
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 1 cut(s) 156
MalI GATC 2 cut(s) 184, 241
MboI GATC 2 cut(s) 182, 239
MboII GAAGA 1 cut(s) 187
MflI RGATCY 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 180, 201
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 3 cut(s) 26, 141, 166
MwoI GCNNNNNNNGC 1 cut(s) 119
NciI CCSGG 1 cut(s) 201
NdeII GATC 2 cut(s) 182, 239
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 173, 184
PceI AGGCCT 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 5 cut(s) 30, 33, 115, 143, 146
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 173, 184
PspPI GGNCC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 182
SatI GCNGC 5 cut(s) 29, 32, 114, 142, 145
Sau3AI GATC 2 cut(s) 182, 239
Sau96I GGNCC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 180, 201
SetI ASST 4 cut(s) 21, 65, 78, 195
SfaNI GCATC 1 cut(s) 156
SinI GGWCC 1 cut(s) 171
SseBI AGGCCT 1 cut(s) 212
SsiI CCGC 6 cut(s) 29, 39, 114, 141, 144, 228
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 178, 199
StyI CCWWGG 1 cut(s) 117
TauI GCSGC 4 cut(s) 31, 116, 144, 147
TseI GCWGC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 115
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.