Rh6AG176800

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002304
Physical Location & Seq
Reverse (-)
28636365 .. 28691446
55082 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG176800.1

Sequence Viewer

Length: 357 bp
ATGGAAGGAACTCAAAGAACTCCAACTACTCAAGGAACTCCAATTGTATTGTTTGTACTTCAGATTTGGAATGAGACATGGCTGTCAAGTTTCTTTTACAAACCATGCAATTATGAGCTATTTGTGAAGCAATCTCTCAATATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGTTATTTTTTCGAACTATAAACTATGGATCATCTCTTTATGCATTGTCCTTTTGCCAATCAATGAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

118

Amino Acids

13.57

Weight (kDa)

4.63

Isoelectric Point (pI)

24.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 82
AccB1I GGYRCC 1 cut(s) 227
AclWI GGATC 1 cut(s) 320
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 1 cut(s) 57
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 2 cut(s) 118, 224
AluI AGCT 2 cut(s) 118, 224
Alw26I GTCTC 1 cut(s) 68
AlwI GGATC 1 cut(s) 320
AlwNI CAGNNNCTG 1 cut(s) 256
ApeKI GCWGC 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 243
BccI CCATC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 68
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
Bme1390I CCNGG 1 cut(s) 270
BmiI GGNNCC 1 cut(s) 229
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 160
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 231, 269
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 2 cut(s) 231, 269
BseGI GGATG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 188
BseXI GCAGC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 220
BshNI GGYRCC 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 296
Bsp143I GATC 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 229
BspPI GGATC 1 cut(s) 320
BspT104I TTCGAA 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 2 cut(s) 231, 269
BssMI GATC 1 cut(s) 312
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 270
BstAPI GCANNNNNTGC 2 cut(s) 170, 256
BstBI TTCGAA 1 cut(s) 296
BstF5I GGATG 1 cut(s) 175
BstKTI GATC 1 cut(s) 315
BstMAI GTCTC 1 cut(s) 68
BstMBI GATC 1 cut(s) 312
BstMWI GCNNNNNNNGC 3 cut(s) 170, 256, 265
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstV1I GCAGC 1 cut(s) 243
BtsCI GGATG 1 cut(s) 175
CaiI CAGNNNCTG 1 cut(s) 256
Csp6I GTAC 1 cut(s) 56
CviAII CATG 2 cut(s) 78, 105
CviJI RGCY 4 cut(s) 82, 118, 152, 224
CviKI_1 RGCY 4 cut(s) 82, 118, 152, 224
CviQI GTAC 1 cut(s) 56
DpnI GATC 1 cut(s) 314
DpnII GATC 1 cut(s) 312
DrdI GACNNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 2 cut(s) 81, 108
FaiI YATR 9 cut(s) 79, 106, 114, 143, 161, 284, 303, 310, 325
FatI CATG 2 cut(s) 77, 104
Fnu4HI GCNGC 1 cut(s) 257
FokI GGATG 1 cut(s) 182
Fsp4HI GCNGC 1 cut(s) 257
GluI GCNGC 1 cut(s) 257
GsaI CCCAGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 81, 108
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 197
HpyCH4V TGCA 2 cut(s) 108, 327
HpyF10VI GCNNNNNNNGC 3 cut(s) 170, 256, 265
Hsp92II CATG 2 cut(s) 81, 108
Kzo9I GATC 1 cut(s) 312
LpnPI CCDG 6 cut(s) 159, 169, 210, 234, 255, 282
Lsp1109I GCAGC 1 cut(s) 243
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 210
MalI GATC 1 cut(s) 314
MboI GATC 1 cut(s) 312
MfeI CAATTG 1 cut(s) 42
MluCI AATT 2 cut(s) 42, 109
MmeI TCCRAC 1 cut(s) 47
MnlI CCTC 2 cut(s) 240, 343
Mph1103I ATGCAT 1 cut(s) 329
MspA1I CMGCKG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 270
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 3 cut(s) 170, 256, 265
NdeII GATC 1 cut(s) 312
NlaIII CATG 2 cut(s) 81, 108
NlaIV GGNNCC 1 cut(s) 229
NsiI ATGCAT 1 cut(s) 329
NspV TTCGAA 1 cut(s) 296
PkrI GCNGC 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 229
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
PstNI CAGNNNCTG 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 224
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 1 cut(s) 312
ScrFI CCNGG 1 cut(s) 270
SetI ASST 2 cut(s) 120, 226
SfaNI GCATC 1 cut(s) 160
SfuI TTCGAA 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 2 cut(s) 42, 109
StyD4I CCNGG 1 cut(s) 268
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 1 cut(s) 296
TasI AATT 2 cut(s) 42, 109
TatI WGTACW 1 cut(s) 55
TseI GCWGC 1 cut(s) 256
TspDTI ATGAA 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.