Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002304

Physical Location & Seq

Genomic Coordinates Forward (+)

88255213 .. 88269247

Gene Structure 14035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG555100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGAGATGGCTATTGTTATGGCAAGGGATGCTGGAATGGACTGGATTATTCATCTTGATACTGATGAGTTACTACACCCAGCTGGTGCCAAGGAGTATTCTTTGAGGCAGTTGCTGCTTGATGTGCCTGGGAATGTGGATATGGTTATTTTTTCGAACTATGAGAGAAGTGTTGAACGAGATGATATTAAGGAACCTTTTACCGAGTGTCTCGAGACAAGGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_92

Protein Analysis

75

Amino Acids

8.68

Weight (kDa)

4.49

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002304)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08550
fragaria_vesca	FvH4_7g02090
malus_domestica	MD02G1296800.v1.1 MD07G1027100.v1.1
prunus_persica	Prupe.2G027600_v2.0.a1
pyrus_communis	pycom02g25000 pycom07g02090
rosa_chinensis	RchiOBHm_Chr1g0316351 RchiOBHm_Chr1g0319411 RchiOBHm_Chr1g0325671 RchiOBHm_Chr2g0129781 RchiOBHm_Chr5g0068801 RchiOBHm_Chr6g0245671 RchiOBHm_Chr7g0241271
rosa_laevigata	RLG00000030486 RLG00000030487 RLG00000034695
rosa_multiflora	Rmu_co8159340.1_g000001 Rmu_sc0006930.1_g000001 Rmu_sc0009208.1_g000025
rosa_roxburghii	Rroxscaffold_4G00328490 Rroxscaffold_5G00332930
rosa_rugosa	Rorug01G0027500 Rorug01G0027600 Rorug01G0027700 Rorug04G0157100 Rorug05G0507900
rosa_samantha	Rh1AG019800 Rh1AG039800 Rh1BG036600 Rh1CG038900 Rh1DG030900 Rh4CG067600 Rh5BG555100 Rh5CG577900 Rh6AG110800 Rh6AG176800
rosa_wichuraiana	Rw1G003180 Rw1G035870 Rw2G016160 Rw2G027780 Rw7G016140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	209, 215
AlwNI	CAGNNNCTG	1 cut(s)	115
Ama87I	CYCGRG	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	115
AsuII	TTCGAA	1 cut(s)	155
AvaI	CYCGRG	1 cut(s)	212
BanI	GGYRCC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	209, 215
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	88, 195
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	19
Bpu14I	TTCGAA	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	90, 128
Bse1I	ACTGG	1 cut(s)	47
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	90, 128
BseGI	GGATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	102
BseYI	CCCAGC	1 cut(s)	79
BshNI	GGYRCC	1 cut(s)	86
BsiHKCI	CYCGRG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	209, 215
BsoBI	CYCGRG	1 cut(s)	212
Bsp119I	TTCGAA	1 cut(s)	155
BspLI	GGNNCC	2 cut(s)	88, 195
BspT104I	TTCGAA	1 cut(s)	155
BspT107I	GGYRCC	1 cut(s)	86
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	2 cut(s)	90, 128
BssT1I	CCWWGG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	129
BstAPI	GCANNNNNTGC	2 cut(s)	29, 115
BstBI	TTCGAA	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	34
BstMAI	GTCTC	2 cut(s)	209, 215
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 115, 124
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	115
CviJI	RGCY	2 cut(s)	11, 83
CviKI_1	RGCY	2 cut(s)	11, 83
Eco130I	CCWWGG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	90
FaiI	YATR	3 cut(s)	20, 143, 162
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	83
Hpy188III	TCNNGA	3 cut(s)	56, 212, 214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 115, 124
LpnPI	CCDG	6 cut(s)	18, 28, 69, 93, 114, 141
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	1 cut(s)	19
MaeIII	GTNAC	1 cut(s)	69
MnlI	CCTC	1 cut(s)	99
MseI	TTAA	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	29, 115, 124
NlaIV	GGNNCC	2 cut(s)	88, 195
NspV	TTCGAA	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	2 cut(s)	88, 195
PstNI	CAGNNNCTG	1 cut(s)	115
PvuII	CAGCTG	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	2 cut(s)	85, 199
SfaNI	GCATC	1 cut(s)	19
Sfr274I	CTCGAG	1 cut(s)	212
SfuI	TTCGAA	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	90
TaqI	TCGA	2 cut(s)	155, 213
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TseI	GCWGC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	41
XhoI	CTCGAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.