RLG00000030486

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0002304
Physical Location & Seq
Forward (+)
62381925 .. 62382356
432 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030486

Sequence Viewer

Length: 432 bp
ATGACCAACCCCTACCACCTCCACGCGCCGCTGCGCTCCGCCCCTCAATCCTCCTCTCAAACCTTCACGGCGAAGCTCCTCCTCCTCCTCACTCTCCTCCCTCTCTCTCTCGCCGCCTTGGCTTTCATCCTCCAATGGCGCGGCGGCATCCCCGACCCCACCACTCGCTGGTCCCCTCCTGGATCCAACCACCTCTTCCCCGGCATGGAGGCCTCTCCTCTCTCCTCCGCCGTCGTCCGATCCTCCTCCTCCTCCTCCGATTGCGTCAATCTCGGCCGCAGCAACTCCCCGTCGTTTCCTTACTATCAGAATTGGAAGTTTGATTCCGCCGCCGATTTGAAACCGAAGGTTCGTCTTTCTTCTTTGAAATTTCAGATTCATGTGGTGTTAGAAATTCCTCAGAGTTTGGTGACCGCTGTGATCTGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

144

Amino Acids

15.59

Weight (kDa)

9.62

Isoelectric Point (pI)

68.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 168
AccII CGCG 2 cut(s) 26, 141
AclWI GGATC 3 cut(s) 177, 190, 234
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 2 cut(s) 368, 393
AfiI CCNNNNNNNGG 2 cut(s) 168, 205
AgsI TTSAA 2 cut(s) 340, 367
AjnI CCWGG 1 cut(s) 178
AjuI GAANNNNNNNTTGG 2 cut(s) 179, 211
AluBI AGCT 1 cut(s) 76
AluI AGCT 1 cut(s) 76
AlwI GGATC 3 cut(s) 177, 190, 234
AoxI GGCC 2 cut(s) 210, 274
ApeKI GCWGC 2 cut(s) 31, 279
ApoI RAATTY 2 cut(s) 368, 393
AspLEI GCGC 3 cut(s) 28, 36, 141
AspS9I GGNCC 1 cut(s) 171
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 421
AvaII GGWCC 1 cut(s) 171
BamHI GGATCC 1 cut(s) 182
BbvI GCAGC 2 cut(s) 18, 291
BceAI ACGGC 2 cut(s) 84, 215
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 201
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 8 cut(s) 29, 32, 114, 142, 145, 277, 280, 330
BlsI GCNGC 8 cut(s) 30, 33, 115, 143, 146, 278, 281, 331
Bme1390I CCNGG 2 cut(s) 180, 201
Bme18I GGWCC 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 171
BmiI GGNNCC 2 cut(s) 173, 184
BmrFI CCNGG 2 cut(s) 180, 201
BmsI GCATC 1 cut(s) 156
BpuMI CCSGG 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 117, 199
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 205
Bse8I GATNNNNATC 1 cut(s) 425
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 117, 199
BseGI GGATG 2 cut(s) 126, 147
BseJI GATNNNNATC 1 cut(s) 425
BseLI CCNNNNNNNGG 2 cut(s) 168, 205
BseMII CTCAG 1 cut(s) 413
BseX3I CGGCCG 1 cut(s) 274
BseXI GCAGC 2 cut(s) 18, 291
Bsh1236I CGCG 2 cut(s) 26, 141
Bsh1285I CGRYCG 1 cut(s) 277
BshFI GGCC 2 cut(s) 212, 276
BsiEI CGRYCG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 2 cut(s) 168, 205
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 2 cut(s) 212, 276
Bsp143I GATC 3 cut(s) 182, 239, 420
BspANI GGCC 2 cut(s) 212, 276
BspCNI CTCAG 1 cut(s) 412
BspFNI CGCG 2 cut(s) 26, 141
BspLI GGNNCC 2 cut(s) 173, 184
BspPI GGATC 3 cut(s) 177, 190, 234
BssECI CCNNGG 2 cut(s) 117, 199
BssMI GATC 3 cut(s) 182, 239, 420
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 1 cut(s) 180
Bst6I CTCTTC 1 cut(s) 200
BstDEI CTNAG 1 cut(s) 399
BstEII GGTNACC 1 cut(s) 409
BstF5I GGATG 2 cut(s) 126, 147
BstFNI CGCG 2 cut(s) 26, 141
BstHHI GCGC 3 cut(s) 28, 36, 141
BstKTI GATC 3 cut(s) 185, 242, 423
BstMBI GATC 3 cut(s) 182, 239, 420
BstMCI CGRYCG 1 cut(s) 277
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstNI CCWGG 1 cut(s) 180
BstPI GGTNACC 1 cut(s) 409
BstSCI CCNGG 2 cut(s) 178, 199
BstUI CGCG 2 cut(s) 26, 141
BstV1I GCAGC 2 cut(s) 18, 291
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BstZI CGGCCG 1 cut(s) 274
BsuRI GGCC 2 cut(s) 212, 276
BtsCI GGATG 2 cut(s) 126, 147
CfoI GCGC 3 cut(s) 28, 36, 141
Cfr13I GGNCC 1 cut(s) 171
CseI GACGC 1 cut(s) 253
CviAII CATG 2 cut(s) 205, 380
CviJI RGCY 4 cut(s) 76, 122, 212, 276
CviKI_1 RGCY 4 cut(s) 76, 122, 212, 276
DdeI CTNAG 1 cut(s) 399
DpnI GATC 3 cut(s) 184, 241, 422
DpnII GATC 3 cut(s) 182, 239, 420
EaeI YGGCCR 1 cut(s) 274
EagI CGGCCG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 200
EarI CTCTTC 1 cut(s) 200
EciI GGCGGA 3 cut(s) 28, 217, 316
EclXI CGGCCG 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 117
Eco147I AGGCCT 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 171
Eco52I CGGCCG 1 cut(s) 274
Eco91I GGTNACC 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 2 cut(s) 208, 383
FaiI YATR 2 cut(s) 206, 381
FaqI GGGAC 1 cut(s) 157
FatI CATG 2 cut(s) 204, 379
Fnu4HI GCNGC 8 cut(s) 29, 32, 114, 142, 145, 277, 280, 330
FokI GGATG 2 cut(s) 113, 134
Fsp4HI GCNGC 8 cut(s) 29, 32, 114, 142, 145, 277, 280, 330
GlaI GCGC 3 cut(s) 27, 35, 140
GluI GCNGC 8 cut(s) 29, 32, 114, 142, 145, 277, 280, 330
HaeIII GGCC 2 cut(s) 212, 276
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 253
HhaI GCGC 3 cut(s) 28, 36, 141
Hin1II CATG 2 cut(s) 208, 383
Hin6I GCGC 3 cut(s) 26, 34, 139
HinP1I GCGC 3 cut(s) 26, 34, 139
HinfI GANTC 2 cut(s) 323, 376
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 421
Hpy188I TCNGA 6 cut(s) 239, 259, 309, 375, 402, 431
Hpy99I CGWCG 2 cut(s) 236, 295
HpyAV CCTTC 2 cut(s) 73, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 399
Hsp92II CATG 2 cut(s) 208, 383
HspAI GCGC 3 cut(s) 26, 34, 139
Kzo9I GATC 3 cut(s) 182, 239, 420
LmnI GCTCC 2 cut(s) 41, 81
LpnPI CCDG 4 cut(s) 154, 165, 192, 214
Lsp1109I GCAGC 2 cut(s) 18, 291
LweI GCATC 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 409
MalI GATC 3 cut(s) 184, 241, 422
MboI GATC 3 cut(s) 182, 239, 420
MboII GAAGA 2 cut(s) 187, 351
MflI RGATCY 1 cut(s) 182
MluCI AATT 3 cut(s) 310, 368, 393
MmeI TCCRAC 1 cut(s) 210
MspA1I CMGCKG 2 cut(s) 31, 416
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 2 cut(s) 180, 201
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 2 cut(s) 26, 141
MwoI GCNNNNNNNGC 1 cut(s) 119
NciI CCSGG 1 cut(s) 201
NdeII GATC 3 cut(s) 182, 239, 420
NlaIII CATG 2 cut(s) 208, 383
NlaIV GGNNCC 2 cut(s) 173, 184
NmeAIII GCCGAG 1 cut(s) 252
NmuCI GTSAC 1 cut(s) 409
PceI AGGCCT 1 cut(s) 212
PfeI GAWTC 2 cut(s) 323, 376
PflMI CCANNNNNTGG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 8 cut(s) 30, 33, 115, 143, 146, 278, 281, 331
Psp6I CCWGG 1 cut(s) 178
PspEI GGTNACC 1 cut(s) 409
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 173, 184
PspPI GGNCC 1 cut(s) 171
PsuI RGATCY 1 cut(s) 182
SatI GCNGC 8 cut(s) 29, 32, 114, 142, 145, 277, 280, 330
Sau3AI GATC 3 cut(s) 182, 239, 420
Sau96I GGNCC 1 cut(s) 171
ScrFI CCNGG 2 cut(s) 180, 201
SetI ASST 5 cut(s) 21, 65, 78, 195, 351
SfaNI GCATC 1 cut(s) 156
SinI GGWCC 1 cut(s) 171
Sse9I AATT 3 cut(s) 310, 368, 393
SseBI AGGCCT 1 cut(s) 212
StuI AGGCCT 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 178, 199
StyI CCWWGG 1 cut(s) 117
TasI AATT 3 cut(s) 310, 368, 393
TauI GCSGC 6 cut(s) 31, 116, 144, 147, 279, 332
TfiI GAWTC 2 cut(s) 323, 376
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 31, 279
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 115, 368
Van91I CCANNNNNTGG 1 cut(s) 168
VpaK11BI GGWCC 1 cut(s) 171
XapI RAATTY 2 cut(s) 368, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.