Rw1G035870

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0002304
Physical Location & Seq
Reverse (-)
63681706 .. 63682179
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G035870.1

Sequence Viewer

Length: 474 bp
ATGTTCAAGAAGAATTACGATCAGGTACCAAAAGATACATACTTTGGAATGTACAAAGAATCAACCCGTGGCAACCCAAACTACTTTCTGACTTATGGAAATGAGAAATCAGCTGCTCAAATCCAAGATCATTTCCGTCCAAATGGTGCACACAGATGGCACAATTATATGAAAACCCCAAACTACAGTAATTTTGTATTGAAAAGAGCACTTCTTTTTTATTTATTGATTATAGTAATCATTTTTCTCGCAATTCCTTTTAGTGAGATCAGACTGGAAGAGGCTGCTGTTCTACACTACATATATGCCAAATTTTCGGACTTAACGTCAAGACATGATCGGTGTGGCTGCAAGCCTACAAGAGAATATGTCAAAAGATGCTTCATGTTGGAATTTGATAGAGCTGTGAGTTCAATGCGTTCTTTAAGTCCTTTGTTTATCTCTTTAGCTTTTACAGCCTTATCTTGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

157

Amino Acids

18.47

Weight (kDa)

9.39

Isoelectric Point (pI)

46.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 25
AcsI RAATTY 2 cut(s) 311, 392
AfaI GTAC 3 cut(s) 27, 53, 469
AgsI TTSAA 3 cut(s) 7, 202, 414
AhdI GACNNNNNGTC 1 cut(s) 325
AluBI AGCT 3 cut(s) 113, 404, 449
AluI AGCT 3 cut(s) 113, 404, 449
Alw21I GWGCWC 2 cut(s) 151, 211
Alw44I GTGCAC 1 cut(s) 147
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 3 cut(s) 113, 284, 348
ApoI RAATTY 2 cut(s) 311, 392
Asp718I GGTACC 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 151
BanI GGYRCC 1 cut(s) 25
Bbv12I GWGCWC 2 cut(s) 151, 211
BbvI GCAGC 3 cut(s) 100, 271, 335
BccI CCATC 1 cut(s) 150
BfmI CTRYAG 1 cut(s) 184
BisI GCNGC 3 cut(s) 114, 285, 349
BlsI GCNGC 3 cut(s) 115, 286, 350
BmeRI GACNNNNNGTC 1 cut(s) 325
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 3 cut(s) 100, 271, 335
BshNI GGYRCC 1 cut(s) 25
BsiHKAI GWGCWC 2 cut(s) 151, 211
Bsp1286I GDGCHC 2 cut(s) 151, 211
Bsp1407I TGTACA 2 cut(s) 51, 467
Bsp143I GATC 4 cut(s) 19, 127, 267, 337
BspLI GGNNCC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 25
BsrGI TGTACA 2 cut(s) 51, 467
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 1 cut(s) 67
BssMI GATC 4 cut(s) 19, 127, 267, 337
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 273
BstAUI TGTACA 2 cut(s) 51, 467
BstC8I GCNNGC 1 cut(s) 353
BstDSI CCRYGG 1 cut(s) 67
BstKTI GATC 4 cut(s) 22, 130, 270, 340
BstMBI GATC 4 cut(s) 19, 127, 267, 337
BstMWI GCNNNNNNNGC 1 cut(s) 455
BstSFI CTRYAG 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 3 cut(s) 100, 271, 335
BtgI CCRYGG 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 353
Csp6I GTAC 3 cut(s) 26, 52, 468
CviAII CATG 2 cut(s) 335, 385
CviJI RGCY 7 cut(s) 113, 284, 348, 355, 404, 449, 458
CviKI_1 RGCY 7 cut(s) 113, 284, 348, 355, 404, 449, 458
CviQI GTAC 3 cut(s) 26, 52, 468
DpnI GATC 4 cut(s) 21, 129, 269, 339
DpnII GATC 4 cut(s) 19, 127, 267, 337
DriI GACNNNNNGTC 1 cut(s) 325
Eam1104I CTCTTC 1 cut(s) 273
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 1 cut(s) 273
FaeI CATG 2 cut(s) 338, 388
FatI CATG 2 cut(s) 334, 384
Fnu4HI GCNGC 3 cut(s) 114, 285, 349
Fsp4HI GCNGC 3 cut(s) 114, 285, 349
GluI GCNGC 3 cut(s) 114, 285, 349
Hin1II CATG 2 cut(s) 338, 388
HinfI GANTC 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 3 cut(s) 90, 272, 319
Hpy188III TCNNGA 2 cut(s) 7, 330
Hpy8I GTNNAC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 2 cut(s) 149, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 455
HpySE526I ACGT 1 cut(s) 326
Hsp92II CATG 2 cut(s) 338, 388
KpnI GGTACC 1 cut(s) 29
Kzo9I GATC 4 cut(s) 19, 127, 267, 337
LpnPI CCDG 2 cut(s) 8, 260
Lsp1109I GCAGC 3 cut(s) 100, 271, 335
LweI GCATC 1 cut(s) 368
MaeII ACGT 1 cut(s) 326
MalI GATC 4 cut(s) 21, 129, 269, 339
MboI GATC 4 cut(s) 19, 127, 267, 337
MboII GAAGA 2 cut(s) 22, 290
MhlI GDGCHC 2 cut(s) 151, 211
MluCI AATT 6 cut(s) 13, 163, 190, 252, 311, 392
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 1 cut(s) 274
MseI TTAA 2 cut(s) 323, 425
MslI CAYNNNNRTG 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 455
NdeII GATC 4 cut(s) 19, 127, 267, 337
NlaIII CATG 2 cut(s) 338, 388
NlaIV GGNNCC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 323
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 3 cut(s) 115, 286, 350
PspN4I GGNNCC 1 cut(s) 27
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 3 cut(s) 27, 53, 469
RsaNI GTAC 3 cut(s) 26, 52, 468
RseI CAYNNNNRTG 1 cut(s) 154
SaqAI TTAA 2 cut(s) 323, 425
SatI GCNGC 3 cut(s) 114, 285, 349
Sau3AI GATC 4 cut(s) 19, 127, 267, 337
SduI GDGCHC 2 cut(s) 151, 211
SetI ASST 5 cut(s) 27, 115, 329, 406, 451
SfaNI GCATC 1 cut(s) 368
SfcI CTRYAG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 154
Sse9I AATT 6 cut(s) 13, 163, 190, 252, 311, 392
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 1 cut(s) 329
TasI AATT 6 cut(s) 13, 163, 190, 252, 311, 392
TatI WGTACW 2 cut(s) 51, 467
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 2 cut(s) 323, 425
Tru9I TTAA 2 cut(s) 323, 425
TseI GCWGC 3 cut(s) 113, 284, 348
TspDTI ATGAA 2 cut(s) 185, 373
TspGWI ACGGA 1 cut(s) 125
VneI GTGCAC 1 cut(s) 147
XapI RAATTY 2 cut(s) 311, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.