RLG00000034695

Glycosyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002304
Physical Location & Seq
Reverse (-)
51725078 .. 51729281
4204 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034695

Sequence Viewer

Length: 732 bp
ATGAATCTTCCCCTTTCAACAAAACATCCGATGGAGATTTGCACACTTTATATGTCTAAGGTCTCGAGCCAAGCTGACATTCAAGCTCCGTCTCATGCCCATCTAACTAATTTCTTAAGATTCTTCTGTAGGTCAAACCCATTGTGTTTATCGCTGCCATTTATCGGGCGAGTTCATCTCGAGGATGCTCTGAACATTGCAACGCATTCCCTCGTTGATATGGAAGAGCTGAGGCAAGACTCTGTTGAACGAGATGATATTAAGGAACCTTTTACTGAGGTATCCATGTTCAAGAAGAATTACGATCATGTACCAAAAGATACATACTTTGGAATGTACAAAGAATCAACCCGTGGCAACCCAAACTACTTTCTGACTTATGGAAATGAGAAATCAGCTGCTCAAATCCAAGATCATTTCCGTCCTAATGGTGCACACAGATGGCACAATTATATGAAAACCCCAAATGAGATCAAACTGGAAGAGGCTGCTGTTCTACACTACATATATGCCAAATTTTCGGACTTAACGTCAAGACATGATCGGTGTGGCTGCAAGCCTACAAGACAATATGTCAAAAGATGCTTCATGTTGGAATTTGATAGAGCTAATGCCAGATGTGCTACAGCACTACAAACCAAATCTGTTACACACCAGGCTCCAACAATCACAAGTCTTCCTCGACCAAAAGAATTGGTATATTCAGTGACAGGGAAACAGGGTCTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000271 GO:0000902 GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006109 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009314 GO:0009416 GO:0009505 GO:0009628 GO:0009653 GO:0009663 GO:0009664 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009746 GO:0009749 GO:0009825 GO:0009826 GO:0009827 GO:0009831 GO:0009832 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010074 GO:0010078 GO:0010215 GO:0010556 GO:0010675 GO:0010962 GO:0010981 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0016051 GO:0019222 GO:0019827 GO:0022607 GO:0022622 GO:0030154 GO:0030198 GO:0030243 GO:0030244 GO:0030312 GO:0031323 GO:0031326 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032881 GO:0032885 GO:0032950 GO:0032951 GO:0032989 GO:0033692 GO:0033993 GO:0034284 GO:0034330 GO:0034637 GO:0034645 GO:0040007 GO:0042221 GO:0042545 GO:0042546 GO:0042547 GO:0043062 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043255 GO:0044042 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045216 GO:0045229 GO:0048364 GO:0048507 GO:0048589 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051273 GO:0051274 GO:0051716 GO:0060255 GO:0060560 GO:0065007 GO:0070726 GO:0071214 GO:0071478 GO:0071482 GO:0071554 GO:0071555 GO:0071668 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0080090 GO:0097305 GO:0097708 GO:0098727 GO:0098791 GO:0099402 GO:0104004 GO:1901576 GO:1901700 GO:1903338 GO:1905392 GO:2000112 GO:2001006 GO:2001009
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_92

Protein Analysis

244

Amino Acids

28.04

Weight (kDa)

8.76

Isoelectric Point (pI)

46.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 515, 596
AfaI GTAC 2 cut(s) 312, 338
AfiI CCNNNNNNNGG 1 cut(s) 164
AflII CTTAAG 1 cut(s) 115
AgsI TTSAA 4 cut(s) 18, 83, 248, 292
AhdI GACNNNNNGTC 2 cut(s) 529, 572
AjnI CCWGG 1 cut(s) 654
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 5 cut(s) 74, 86, 229, 398, 608
AluI AGCT 5 cut(s) 74, 86, 229, 398, 608
Alw21I GWGCWC 1 cut(s) 436
Alw26I GTCTC 2 cut(s) 67, 96
Alw44I GTGCAC 1 cut(s) 432
AlwNI CAGNNNCTG 1 cut(s) 724
Ama87I CYCGRG 2 cut(s) 64, 179
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 4 cut(s) 154, 398, 488, 552
ApoI RAATTY 2 cut(s) 515, 596
AvaI CYCGRG 2 cut(s) 64, 179
BaeGI GKGCMC 1 cut(s) 436
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 436
BbvCI CCTCAGC 1 cut(s) 230
BbvI GCAGC 4 cut(s) 141, 385, 475, 539
BccI CCATC 3 cut(s) 25, 108, 435
BciT130I CCWGG 1 cut(s) 656
BciVI GTATCC 1 cut(s) 292
BcoDI GTCTC 2 cut(s) 67, 96
BfmI CTRYAG 2 cut(s) 127, 624
BfrI CTTAAG 1 cut(s) 115
BfuI GTATCC 1 cut(s) 292
BisI GCNGC 4 cut(s) 155, 399, 489, 553
BlsI GCNGC 4 cut(s) 156, 400, 490, 554
Bme1390I CCNGG 1 cut(s) 656
BmeRI GACNNNNNGTC 2 cut(s) 529, 572
BmeT110I CYCGRG 2 cut(s) 64, 179
BmiI GGNNCC 2 cut(s) 267, 660
BmrFI CCNGG 1 cut(s) 656
BmsI GCATC 2 cut(s) 175, 572
BpiI GAAGAC 1 cut(s) 668
BplI GAGNNNNNCTC 2 cut(s) 162, 194
Bpu10I CCTNAGC 1 cut(s) 230
BsaI GGTCTC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 352
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 483
Bse3DI GCAATG 1 cut(s) 195
BseBI CCWGG 1 cut(s) 656
BseDI CCNNGG 1 cut(s) 352
BseGI GGATG 2 cut(s) 25, 190
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMI GCAATG 1 cut(s) 195
BseMII CTCAG 2 cut(s) 221, 267
BseNI ACTGG 1 cut(s) 483
BseSI GKGCMC 1 cut(s) 436
BseXI GCAGC 4 cut(s) 141, 385, 475, 539
BsiHKAI GWGCWC 1 cut(s) 436
BsiHKCI CYCGRG 2 cut(s) 64, 179
BslI CCNNNNNNNGG 1 cut(s) 164
BsmAI GTCTC 2 cut(s) 67, 96
BsmBI CGTCTC 1 cut(s) 96
BsmI GAATGC 1 cut(s) 205
Bso31I GGTCTC 1 cut(s) 67
BsoBI CYCGRG 2 cut(s) 64, 179
Bsp1286I GDGCHC 1 cut(s) 436
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 4 cut(s) 304, 412, 471, 541
BspCNI CTCAG 2 cut(s) 222, 268
BspLI GGNNCC 2 cut(s) 267, 660
BspQI GCTCTTC 1 cut(s) 219
BspTI CTTAAG 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 336
BsrI ACTGG 1 cut(s) 483
BssECI CCNNGG 1 cut(s) 352
BssMI GATC 4 cut(s) 304, 412, 471, 541
Bst2UI CCWGG 1 cut(s) 656
Bst6I CTCTTC 2 cut(s) 219, 477
BstAFI CTTAAG 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 557
BstDEI CTNAG 3 cut(s) 57, 230, 276
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 2 cut(s) 25, 190
BstKTI GATC 4 cut(s) 307, 415, 474, 544
BstMAI GTCTC 2 cut(s) 67, 96
BstMBI GATC 4 cut(s) 304, 412, 471, 541
BstMWI GCNNNNNNNGC 1 cut(s) 620
BstNI CCWGG 1 cut(s) 656
BstSCI CCNGG 1 cut(s) 654
BstSFI CTRYAG 2 cut(s) 127, 624
BstSLI GKGCMC 1 cut(s) 436
BstV1I GCAGC 4 cut(s) 141, 385, 475, 539
BstV2I GAAGAC 1 cut(s) 668
BsuI GTATCC 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 2 cut(s) 25, 190
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 1 cut(s) 557
CaiI CAGNNNCTG 1 cut(s) 724
Csp6I GTAC 2 cut(s) 311, 337
CviAII CATG 5 cut(s) 95, 286, 308, 539, 589
CviQI GTAC 2 cut(s) 311, 337
DdeI CTNAG 3 cut(s) 57, 230, 276
DpnI GATC 4 cut(s) 306, 414, 473, 543
DpnII GATC 4 cut(s) 304, 412, 471, 541
DriI GACNNNNNGTC 2 cut(s) 529, 572
Eam1104I CTCTTC 2 cut(s) 219, 477
Eam1105I GACNNNNNGTC 2 cut(s) 529, 572
EarI CTCTTC 2 cut(s) 219, 477
Eco31I GGTCTC 1 cut(s) 67
Eco88I CYCGRG 2 cut(s) 64, 179
EcoRII CCWGG 1 cut(s) 654
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 5 cut(s) 98, 289, 311, 542, 592
FatI CATG 5 cut(s) 94, 285, 307, 538, 588
Fnu4HI GCNGC 4 cut(s) 155, 399, 489, 553
FokI GGATG 2 cut(s) 12, 197
Fsp4HI GCNGC 4 cut(s) 155, 399, 489, 553
GluI GCNGC 4 cut(s) 155, 399, 489, 553
Hin1II CATG 5 cut(s) 98, 289, 311, 542, 592
HinfI GANTC 4 cut(s) 4, 120, 239, 344
Hpy166II GTNNAC 1 cut(s) 434
Hpy188I TCNGA 4 cut(s) 30, 192, 375, 523
Hpy188III TCNNGA 4 cut(s) 64, 179, 292, 534
Hpy8I GTNNAC 1 cut(s) 434
HpyCH4IV ACGT 1 cut(s) 530
HpyCH4V TGCA 4 cut(s) 42, 200, 434, 555
HpyF10VI GCNNNNNNNGC 1 cut(s) 620
HpyF3I CTNAG 3 cut(s) 57, 230, 276
HpySE526I ACGT 1 cut(s) 530
Hsp92II CATG 5 cut(s) 98, 289, 311, 542, 592
Kzo9I GATC 4 cut(s) 304, 412, 471, 541
LguI GCTCTTC 1 cut(s) 219
LmnI GCTCC 2 cut(s) 91, 664
LpnPI CCDG 6 cut(s) 464, 628, 641, 668, 696, 704
Lsp1109I GCAGC 4 cut(s) 141, 385, 475, 539
LweI GCATC 2 cut(s) 175, 572
MaeII ACGT 1 cut(s) 530
MaeIII GTNAC 2 cut(s) 646, 706
MalI GATC 4 cut(s) 306, 414, 473, 543
MboI GATC 4 cut(s) 304, 412, 471, 541
MboII GAAGA 5 cut(s) 115, 236, 307, 494, 668
MhlI GDGCHC 1 cut(s) 436
MluCI AATT 6 cut(s) 109, 298, 448, 515, 596, 692
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 2 cut(s) 573, 686
MnlI CCTC 6 cut(s) 175, 221, 225, 271, 478, 690
MseI TTAA 3 cut(s) 116, 261, 527
MslI CAYNNNNRTG 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 398
MspCI CTTAAG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 656
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 656
MwoI GCNNNNNNNGC 1 cut(s) 620
NdeII GATC 4 cut(s) 304, 412, 471, 541
NlaIII CATG 5 cut(s) 98, 289, 311, 542, 592
NlaIV GGNNCC 2 cut(s) 267, 660
NmuCI GTSAC 1 cut(s) 706
PaeR7I CTCGAG 2 cut(s) 64, 179
PciSI GCTCTTC 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 3 cut(s) 4, 120, 344
PkrI GCNGC 4 cut(s) 156, 400, 490, 554
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 654
PspGI CCWGG 1 cut(s) 654
PspN4I GGNNCC 2 cut(s) 267, 660
PstNI CAGNNNCTG 1 cut(s) 724
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 2 cut(s) 312, 338
RsaNI GTAC 2 cut(s) 311, 337
RseI CAYNNNNRTG 1 cut(s) 439
SapI GCTCTTC 1 cut(s) 219
SaqAI TTAA 3 cut(s) 116, 261, 527
SatI GCNGC 4 cut(s) 155, 399, 489, 553
Sau3AI GATC 4 cut(s) 304, 412, 471, 541
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 656
SduI GDGCHC 1 cut(s) 436
SfaNI GCATC 2 cut(s) 175, 572
SfcI CTRYAG 2 cut(s) 127, 624
Sfr274I CTCGAG 2 cut(s) 64, 179
SlaI CTCGAG 2 cut(s) 64, 179
SmiMI CAYNNNNRTG 1 cut(s) 439
SmlI CTYRAG 3 cut(s) 64, 115, 179
SmoI CTYRAG 3 cut(s) 64, 115, 179
Sse9I AATT 6 cut(s) 109, 298, 448, 515, 596, 692
StyD4I CCNGG 1 cut(s) 654
TaiI ACGT 1 cut(s) 533
TaqI TCGA 3 cut(s) 65, 180, 682
TasI AATT 6 cut(s) 109, 298, 448, 515, 596, 692
TatI WGTACW 1 cut(s) 336
TfiI GAWTC 3 cut(s) 4, 120, 344
Tru1I TTAA 3 cut(s) 116, 261, 527
Tru9I TTAA 3 cut(s) 116, 261, 527
TscAI CASTG 1 cut(s) 711
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 4 cut(s) 154, 398, 488, 552
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 4 cut(s) 17, 164, 470, 577
TspGWI ACGGA 2 cut(s) 78, 410
TspRI CASTG 1 cut(s) 711
Vha464I CTTAAG 1 cut(s) 115
VneI GTGCAC 1 cut(s) 432
XapI RAATTY 2 cut(s) 515, 596
XhoI CTCGAG 2 cut(s) 64, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.